CompariMotif: quick and easy comparisons of sequence motifs


Edwards, Richard J., Davey, Norman E. and Shields, Denis C. (2008) CompariMotif: quick and easy comparisons of sequence motifs. Bioinformatics, 24, (10), 1307-1309. (doi:10.1093/bioinformatics/btn105). (PMID:18375965).

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Description/Abstract

CompariMotif is a novel tool for making motif–motif comparisons, identifying and describing similarities between regular expression motifs. CompariMotif can identify a number of different relationships between motifs, including exact matches, variants of degenerate motifs and complex overlapping motifs.

Motif relationships are scored using shared information content, allowing the best matches to be easily identified in large comparisons. Many input and search options are available, enabling a list of motifs to be compared to itself (to identify recurring motifs) or to datasets of known motifs.

Item Type: Article
ISSNs: 1367-4803 (print)
1460-2059 (electronic)
Subjects: Q Science > QA Mathematics > QA76 Computer software
Q Science > QH Natural history > QH301 Biology
Divisions: University Structure - Pre August 2011 > School of Engineering Sciences > Bioengineering Sciences
ePrint ID: 143457
Date Deposited: 12 Apr 2010 08:56
Last Modified: 27 Mar 2014 19:05
URI: http://eprints.soton.ac.uk/id/eprint/143457

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