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Towards crystal structure prediction of complex organic compounds – a report on the fifth blind test

Towards crystal structure prediction of complex organic compounds – a report on the fifth blind test
Towards crystal structure prediction of complex organic compounds – a report on the fifth blind test
Following on from the success of the previous crystal structure prediction blind tests (CSP1999, CSP2001, CSP2004 and CSP2007), a fifth such collaborative project (CSP2010) was organized at the Cambridge Crystallographic Data Centre. A range of methodologies was used by the participating groups in order to evaluate the ability of the current computational methods to predict the crystal structures of the six organic molecules chosen as targets for this blind test. The first four targets, two rigid molecules, one semi-flexible molecule and a 1:1 salt, matched the criteria for the targets from CSP2007, while the last two targets belonged to two new challenging categories - a larger, much more flexible molecule and a hydrate with more than one polymorph. Each group submitted three predictions for each target it attempted. There was at least one successful prediction for each target, and two groups were able to successfully predict the structure of the large flexible molecule as their first place submission. The results show that while not as many groups successfully predicted the structures of the three smallest molecules as in CSP2007, there is now evidence that methodologies such as dispersion-corrected density functional theory (DFT-D) are able to reliably do so. The results also highlight the many challenges posed by more complex systems and show that there are still issues to be overcome.
prediction, blind test, polymorph, crystal structure prediction
0108-7681
535-551
Bardwell, David A.
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Adjiman, Claire S.
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Arnautova, Yelena A.
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Bartashevich, Ekaterina
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Boerrigter, Stephan X. M.
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Braun, Doris E.
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Cruz-Cabeza, Aurora J.
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Day, Graeme M.
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Della Valle, Raffaele G.
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Desiraju, Gautam R.
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van Eijck, Bouke P.
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Facelli, Julio C.
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Ferraro, Marta B.
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Grillo, Damian
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Habgood, Matthew
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Hofmann, Detlef W. M.
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Hofmann, Fridolin
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Jose, K. V. Jovan
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Karamertzanis, Panagiotis G.
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Kazantsev, Andrei V.
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Kendrick, John
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Kuleshova, Liudmila N.
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Leusen, Frank J. J.
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Maleev, Andrey V.
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Misquitta, Alston J.
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Mohamed, Sharmarke
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Needs, Richard J.
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Neumann, Marcus A.
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Nikylov, Denis
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Orendt, Anita M.
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Pal, Rumpa
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Pantelides, Constantinos C.
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Pickard, Chris J.
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Price, Louise S.
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Price, Sarah L.
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Scheraga, Harold A.
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van de Streek, Jacco
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Thakur, Tejender S.
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Tiwari, Siddharth
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Venuti, Elisabetta
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Zhitkov, Ilia K.
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Bardwell, David A.
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Adjiman, Claire S.
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Arnautova, Yelena A.
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Bartashevich, Ekaterina
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Boerrigter, Stephan X. M.
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Braun, Doris E.
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Cruz-Cabeza, Aurora J.
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Day, Graeme M.
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Della Valle, Raffaele G.
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Desiraju, Gautam R.
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van Eijck, Bouke P.
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Facelli, Julio C.
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Ferraro, Marta B.
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Grillo, Damian
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Habgood, Matthew
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Hofmann, Fridolin
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Jose, K. V. Jovan
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Karamertzanis, Panagiotis G.
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Kazantsev, Andrei V.
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Kendrick, John
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Kuleshova, Liudmila N.
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Leusen, Frank J. J.
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Maleev, Andrey V.
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Misquitta, Alston J.
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Mohamed, Sharmarke
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Needs, Richard J.
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Neumann, Marcus A.
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Nikylov, Denis
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Orendt, Anita M.
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Pal, Rumpa
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Pantelides, Constantinos C.
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Pickard, Chris J.
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Price, Louise S.
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Price, Sarah L.
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Scheraga, Harold A.
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van de Streek, Jacco
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Thakur, Tejender S.
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Tiwari, Siddharth
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Venuti, Elisabetta
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Zhitkov, Ilia K.
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Bardwell, David A., Adjiman, Claire S., Arnautova, Yelena A., Bartashevich, Ekaterina, Boerrigter, Stephan X. M., Braun, Doris E., Cruz-Cabeza, Aurora J., Day, Graeme M., Della Valle, Raffaele G., Desiraju, Gautam R., van Eijck, Bouke P., Facelli, Julio C., Ferraro, Marta B., Grillo, Damian, Habgood, Matthew, Hofmann, Detlef W. M., Hofmann, Fridolin, Jose, K. V. Jovan, Karamertzanis, Panagiotis G., Kazantsev, Andrei V., Kendrick, John, Kuleshova, Liudmila N., Leusen, Frank J. J., Maleev, Andrey V., Misquitta, Alston J., Mohamed, Sharmarke, Needs, Richard J., Neumann, Marcus A., Nikylov, Denis, Orendt, Anita M., Pal, Rumpa, Pantelides, Constantinos C., Pickard, Chris J., Price, Louise S., Price, Sarah L., Scheraga, Harold A., van de Streek, Jacco, Thakur, Tejender S., Tiwari, Siddharth, Venuti, Elisabetta and Zhitkov, Ilia K. (2011) Towards crystal structure prediction of complex organic compounds – a report on the fifth blind test. Acta Crystallographica Section B: Structural Science, 67 (6), 535-551. (doi:10.1107/S0108768111042868).

Record type: Article

Abstract

Following on from the success of the previous crystal structure prediction blind tests (CSP1999, CSP2001, CSP2004 and CSP2007), a fifth such collaborative project (CSP2010) was organized at the Cambridge Crystallographic Data Centre. A range of methodologies was used by the participating groups in order to evaluate the ability of the current computational methods to predict the crystal structures of the six organic molecules chosen as targets for this blind test. The first four targets, two rigid molecules, one semi-flexible molecule and a 1:1 salt, matched the criteria for the targets from CSP2007, while the last two targets belonged to two new challenging categories - a larger, much more flexible molecule and a hydrate with more than one polymorph. Each group submitted three predictions for each target it attempted. There was at least one successful prediction for each target, and two groups were able to successfully predict the structure of the large flexible molecule as their first place submission. The results show that while not as many groups successfully predicted the structures of the three smallest molecules as in CSP2007, there is now evidence that methodologies such as dispersion-corrected density functional theory (DFT-D) are able to reliably do so. The results also highlight the many challenges posed by more complex systems and show that there are still issues to be overcome.

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More information

Published date: December 2011
Keywords: prediction, blind test, polymorph, crystal structure prediction
Organisations: Organic Chemistry: Synthesis, Catalysis and Flow, Computational Systems Chemistry

Identifiers

Local EPrints ID: 343417
URI: http://eprints.soton.ac.uk/id/eprint/343417
ISSN: 0108-7681
PURE UUID: 6a92caef-6af4-4963-9b72-95a4c2f5b93a
ORCID for Graeme M. Day: ORCID iD orcid.org/0000-0001-8396-2771

Catalogue record

Date deposited: 05 Oct 2012 15:33
Last modified: 15 Mar 2024 03:44

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Contributors

Author: David A. Bardwell
Author: Claire S. Adjiman
Author: Yelena A. Arnautova
Author: Ekaterina Bartashevich
Author: Stephan X. M. Boerrigter
Author: Doris E. Braun
Author: Aurora J. Cruz-Cabeza
Author: Graeme M. Day ORCID iD
Author: Raffaele G. Della Valle
Author: Gautam R. Desiraju
Author: Bouke P. van Eijck
Author: Julio C. Facelli
Author: Marta B. Ferraro
Author: Damian Grillo
Author: Matthew Habgood
Author: Detlef W. M. Hofmann
Author: Fridolin Hofmann
Author: K. V. Jovan Jose
Author: Panagiotis G. Karamertzanis
Author: Andrei V. Kazantsev
Author: John Kendrick
Author: Liudmila N. Kuleshova
Author: Frank J. J. Leusen
Author: Andrey V. Maleev
Author: Alston J. Misquitta
Author: Sharmarke Mohamed
Author: Richard J. Needs
Author: Marcus A. Neumann
Author: Denis Nikylov
Author: Anita M. Orendt
Author: Rumpa Pal
Author: Constantinos C. Pantelides
Author: Chris J. Pickard
Author: Louise S. Price
Author: Sarah L. Price
Author: Harold A. Scheraga
Author: Jacco van de Streek
Author: Tejender S. Thakur
Author: Siddharth Tiwari
Author: Elisabetta Venuti
Author: Ilia K. Zhitkov

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