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A third blind test of crystal structure prediction

A third blind test of crystal structure prediction
A third blind test of crystal structure prediction
Following the interest generated by two previous blind tests of crystal structure prediction (CSP1999 and CSP2001), a third such collaborative project (CSP2004) was hosted by the Cambridge Crystallographic Data Centre. A range of methodologies used in searching for and ranking the likelihood of predicted crystal structures is represented amongst the 18 participating research groups, although most are based on the global minimization of the lattice energy. Initially the participants were given molecular diagrams of three molecules and asked to submit three predictions for the most likely crystal structure of each. Unlike earlier blind tests, no restriction was placed on the possible space group of the target crystal structures. Furthermore, Z' = 2 structures were allowed. Part-way through the test, a partial structure report was discovered for one of the molecules, which could no longer be considered a blind test. Hence, a second molecule from the same category (small, rigid with common atom types) was offered to the participants as a replacement. Success rates within the three submitted predictions were lower than in the previous tests - there was only one successful prediction for any of the three 'blind' molecules. For the 'simplest' rigid molecule, this lack of success is partly due to the observed structure crystallizing with two molecules in the asymmetric unit. As in the 2001 blind test, there was no success in predicting the structure of the flexible molecule. The results highlight the necessity for better energy models, capable of simultaneously describing conformational and packing energies with high accuracy. There is also a need for improvements in search procedures for crystals with more than one independent molecule, as well as for molecules with conformational flexibility. These are necessary requirements for the prediction of possible thermodynamically favoured polymorphs. Which of these are actually realised is also influenced by as yet insufficiently understood processes of nucleation and crystal growth.
modified genetic algorithim, intermolecular interaction energies, direct numerical-integration, organic-molecules, quantitative-evaluation, potential parameters, global optimization, electron-densities, realistic model, force-field
0108-7681
511-527
Day, G.M.
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Motherwell, W.D.S.
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Ammon, H.L.
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Boerrigter, S.X.M.
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Della Valle, R.G.
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Venuti, E.
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Dzyabchenko, A.
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Dunitz, J.D.
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Schweizer, B.
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van Eijck, B.P.
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Erk, P.
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Facelli, J.C.
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Bazterra, V.E.
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Ferraro, M.B.
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Hofmann, D.W.M.
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Leusen, F.J.J.
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Liang, C.
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Pantelides, C.C.
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Karamertzanis, P.G.
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Price, S.L.
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Lewis, T.C.
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Nowell, H.
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Torrisi, A.
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Scheraga, H.A.
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Arnautova, Y.A.
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Schmidt, M.U.
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Verwer, P.
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Day, G.M.
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Motherwell, W.D.S.
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Ammon, H.L.
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Boerrigter, S.X.M.
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Della Valle, R.G.
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Venuti, E.
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Dzyabchenko, A.
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Dunitz, J.D.
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Schweizer, B.
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van Eijck, B.P.
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Erk, P.
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Facelli, J.C.
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Bazterra, V.E.
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Ferraro, M.B.
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Hofmann, D.W.M.
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Leusen, F.J.J.
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Liang, C.
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Pantelides, C.C.
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Karamertzanis, P.G.
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Price, S.L.
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Lewis, T.C.
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Nowell, H.
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Torrisi, A.
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Scheraga, H.A.
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Arnautova, Y.A.
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Schmidt, M.U.
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Verwer, P.
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Day, G.M., Motherwell, W.D.S., Ammon, H.L., Boerrigter, S.X.M., Della Valle, R.G., Venuti, E., Dzyabchenko, A., Dunitz, J.D., Schweizer, B., van Eijck, B.P., Erk, P., Facelli, J.C., Bazterra, V.E., Ferraro, M.B., Hofmann, D.W.M., Leusen, F.J.J., Liang, C., Pantelides, C.C., Karamertzanis, P.G., Price, S.L., Lewis, T.C., Nowell, H., Torrisi, A., Scheraga, H.A., Arnautova, Y.A., Schmidt, M.U. and Verwer, P. (2005) A third blind test of crystal structure prediction. Acta Crystallographica Section B: Structural Science, 61 (5), 511-527. (doi:10.1107/S0108768105016563). (PMID:16186652)

Record type: Article

Abstract

Following the interest generated by two previous blind tests of crystal structure prediction (CSP1999 and CSP2001), a third such collaborative project (CSP2004) was hosted by the Cambridge Crystallographic Data Centre. A range of methodologies used in searching for and ranking the likelihood of predicted crystal structures is represented amongst the 18 participating research groups, although most are based on the global minimization of the lattice energy. Initially the participants were given molecular diagrams of three molecules and asked to submit three predictions for the most likely crystal structure of each. Unlike earlier blind tests, no restriction was placed on the possible space group of the target crystal structures. Furthermore, Z' = 2 structures were allowed. Part-way through the test, a partial structure report was discovered for one of the molecules, which could no longer be considered a blind test. Hence, a second molecule from the same category (small, rigid with common atom types) was offered to the participants as a replacement. Success rates within the three submitted predictions were lower than in the previous tests - there was only one successful prediction for any of the three 'blind' molecules. For the 'simplest' rigid molecule, this lack of success is partly due to the observed structure crystallizing with two molecules in the asymmetric unit. As in the 2001 blind test, there was no success in predicting the structure of the flexible molecule. The results highlight the necessity for better energy models, capable of simultaneously describing conformational and packing energies with high accuracy. There is also a need for improvements in search procedures for crystals with more than one independent molecule, as well as for molecules with conformational flexibility. These are necessary requirements for the prediction of possible thermodynamically favoured polymorphs. Which of these are actually realised is also influenced by as yet insufficiently understood processes of nucleation and crystal growth.

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More information

Published date: 2005
Keywords: modified genetic algorithim, intermolecular interaction energies, direct numerical-integration, organic-molecules, quantitative-evaluation, potential parameters, global optimization, electron-densities, realistic model, force-field
Organisations: Organic Chemistry: Synthesis, Catalysis and Flow, Computational Systems Chemistry

Identifiers

Local EPrints ID: 343455
URI: http://eprints.soton.ac.uk/id/eprint/343455
ISSN: 0108-7681
PURE UUID: eeacfa0b-fccb-42a8-ac0e-f9c177ab236e
ORCID for G.M. Day: ORCID iD orcid.org/0000-0001-8396-2771

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Date deposited: 05 Feb 2013 16:16
Last modified: 15 Mar 2024 03:44

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Contributors

Author: G.M. Day ORCID iD
Author: W.D.S. Motherwell
Author: H.L. Ammon
Author: S.X.M. Boerrigter
Author: R.G. Della Valle
Author: E. Venuti
Author: A. Dzyabchenko
Author: J.D. Dunitz
Author: B. Schweizer
Author: B.P. van Eijck
Author: P. Erk
Author: J.C. Facelli
Author: V.E. Bazterra
Author: M.B. Ferraro
Author: D.W.M. Hofmann
Author: F.J.J. Leusen
Author: C. Liang
Author: C.C. Pantelides
Author: P.G. Karamertzanis
Author: S.L. Price
Author: T.C. Lewis
Author: H. Nowell
Author: A. Torrisi
Author: H.A. Scheraga
Author: Y.A. Arnautova
Author: M.U. Schmidt
Author: P. Verwer

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