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The unexpected but predictable tetrazole packing in flexible 1-benzyl-1H-tetrazole

The unexpected but predictable tetrazole packing in flexible 1-benzyl-1H-tetrazole
The unexpected but predictable tetrazole packing in flexible 1-benzyl-1H-tetrazole
The crystal structure of 1-benzyl-1H-tetrazole, C8H8N4, was undertaken to study the geometry and intermolecular interactions of the (1-substituted) 1H-tetrazole moiety. It crystallizes in the monoclinic space group P2(1) with unit cell dimensions a = 7.6843(5), b = 5.5794(4), c = 9.4459(7) Å, β = 100.949(4)º, V = 397.61(5) Å3, Z = 2, density (calculated) = 1.338 gcm-3. The packing of the molecules in the crystal structure is dominated by a number of weak intermolecular hydrogen bonds of the type CH ··· N and CH ··· C. This results in segregated infinite S-shaped layers of phenyl and tetrazole rings where each tetrazole ring is coordinated by six others. There are no π ··· π interactions. A group developing crystal structure prediction methods for highly flexible molecules was challenged to predict this Z' = 1 crystal structure from the chemical diagram. The experimental structure was found, having essentially the same lattice energy (Δ Elatt similar to 0.1 kJmol-1) as the most stable computationally generated structure, which had the expected π ··· π interaction and no segregation of tetrazole rings. The successful crystal structure prediction confirms that the intra and intermolecular interactions of the tetrazole group can be adequately represented by single molecule ab initio-based methods, which represent the electrostatic effects of the lone pairs and pi electron density. The predicted structure provided a starting model, which was easily refined in SHELXL-97, providing indisputable proof that it is an accurate reproduction of the crystal structure.
1466-8033
6441-6446
Spencer, John
a3cf55cd-a4c7-4af6-b16c-96c8fb8c4cf4
Patel, Hiren
73682df0-69ba-44c9-88b2-5c19f7f23677
Deadman, John J.
6ec79e7a-322c-4d5c-99fd-25480e53ec05
Palmer, Rex A.
f5531d86-e004-43ea-bce3-515f98d6e329
Male, Louise
89b88c4f-2308-4b94-8f3a-2dc537a66533
Coles, Simon J.
3116f58b-c30c-48cf-bdd5-397d1c1fecf8
Uzoh, Ogaga G.
03fcb5df-32ea-4a85-a26a-ac74f84d8e30
Price, Sarah L.
ab33d469-c548-4a15-918f-b0614ce6129a
Spencer, John
a3cf55cd-a4c7-4af6-b16c-96c8fb8c4cf4
Patel, Hiren
73682df0-69ba-44c9-88b2-5c19f7f23677
Deadman, John J.
6ec79e7a-322c-4d5c-99fd-25480e53ec05
Palmer, Rex A.
f5531d86-e004-43ea-bce3-515f98d6e329
Male, Louise
89b88c4f-2308-4b94-8f3a-2dc537a66533
Coles, Simon J.
3116f58b-c30c-48cf-bdd5-397d1c1fecf8
Uzoh, Ogaga G.
03fcb5df-32ea-4a85-a26a-ac74f84d8e30
Price, Sarah L.
ab33d469-c548-4a15-918f-b0614ce6129a

Spencer, John, Patel, Hiren, Deadman, John J., Palmer, Rex A., Male, Louise, Coles, Simon J., Uzoh, Ogaga G. and Price, Sarah L. (2012) The unexpected but predictable tetrazole packing in flexible 1-benzyl-1H-tetrazole. CrystEngComm, 14 (20), 6441-6446. (doi:10.1039/c2ce25940k).

Record type: Article

Abstract

The crystal structure of 1-benzyl-1H-tetrazole, C8H8N4, was undertaken to study the geometry and intermolecular interactions of the (1-substituted) 1H-tetrazole moiety. It crystallizes in the monoclinic space group P2(1) with unit cell dimensions a = 7.6843(5), b = 5.5794(4), c = 9.4459(7) Å, β = 100.949(4)º, V = 397.61(5) Å3, Z = 2, density (calculated) = 1.338 gcm-3. The packing of the molecules in the crystal structure is dominated by a number of weak intermolecular hydrogen bonds of the type CH ··· N and CH ··· C. This results in segregated infinite S-shaped layers of phenyl and tetrazole rings where each tetrazole ring is coordinated by six others. There are no π ··· π interactions. A group developing crystal structure prediction methods for highly flexible molecules was challenged to predict this Z' = 1 crystal structure from the chemical diagram. The experimental structure was found, having essentially the same lattice energy (Δ Elatt similar to 0.1 kJmol-1) as the most stable computationally generated structure, which had the expected π ··· π interaction and no segregation of tetrazole rings. The successful crystal structure prediction confirms that the intra and intermolecular interactions of the tetrazole group can be adequately represented by single molecule ab initio-based methods, which represent the electrostatic effects of the lone pairs and pi electron density. The predicted structure provided a starting model, which was easily refined in SHELXL-97, providing indisputable proof that it is an accurate reproduction of the crystal structure.

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More information

Published date: 6 August 2012
Organisations: Organic Chemistry: Synthesis, Catalysis and Flow

Identifiers

Local EPrints ID: 346093
URI: http://eprints.soton.ac.uk/id/eprint/346093
ISSN: 1466-8033
PURE UUID: abe4ed3a-8c8d-44a3-bb1d-273985b3242d
ORCID for Simon J. Coles: ORCID iD orcid.org/0000-0001-8414-9272

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Date deposited: 19 Dec 2012 09:23
Last modified: 15 Mar 2024 03:01

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Contributors

Author: John Spencer
Author: Hiren Patel
Author: John J. Deadman
Author: Rex A. Palmer
Author: Louise Male
Author: Simon J. Coles ORCID iD
Author: Ogaga G. Uzoh
Author: Sarah L. Price

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