CompariMotif: quick and easy comparisons of sequence motifs


Edwards, Richard J., Davey, Norman E. and Shields, Denis C. (2008) CompariMotif: quick and easy comparisons of sequence motifs Bioinformatics, 24, (10), pp. 1307-1309. (doi:10.1093/bioinformatics/btn105). (PMID:18375965).

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Description/Abstract

CompariMotif is a novel tool for making motif–motif comparisons, identifying and describing similarities between regular expression motifs. CompariMotif can identify a number of different relationships between motifs, including exact matches, variants of degenerate motifs and complex overlapping motifs.

Motif relationships are scored using shared information content, allowing the best matches to be easily identified in large comparisons. Many input and search options are available, enabling a list of motifs to be compared to itself (to identify recurring motifs) or to datasets of known motifs.

Item Type: Article
Digital Object Identifier (DOI): doi:10.1093/bioinformatics/btn105
ISSNs: 1367-4803 (print)
Subjects:
ePrint ID: 143457
Date :
Date Event
28 March 2008Published
Date Deposited: 12 Apr 2010 08:56
Last Modified: 18 Apr 2017 20:03
Further Information:Google Scholar
URI: http://eprints.soton.ac.uk/id/eprint/143457

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