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Variation of codons 1961 and 2177 of the Stargardt disease gene is not associated with age-related macular degeneration

Variation of codons 1961 and 2177 of the Stargardt disease gene is not associated with age-related macular degeneration
Variation of codons 1961 and 2177 of the Stargardt disease gene is not associated with age-related macular degeneration
Objectives To investigate the role of 2 specific alleles of the Stargardt disease gene (ABCA4) in the pathogenesis of age-related macular degeneration (AMD). Secondary objectives were to investigate differences in frequency of the G1961E allele in selected ethnic groups as well as to examine the segregation of both G1961E and D2177N alleles in 5 multiplex families with AMD.
Methods Five hundred forty-four patients with AMD and 689 controls were ascertained from 3 continents. Blood samples from 62 normal individuals of Somalian ancestry were also obtained. Participants were screened for the presence of these ABCA4 alleles with a combination of restriction digestion and single-strand conformation polymorphism analysis of polymerase chain reaction amplification products. Detected alleles were confirmed by DNA sequencing. The number of subjects exhibiting the G1961E or D2177N variants were compared between AMD and control groups using a 2-tailed Fisher exact test.
Results There was no significant difference (P>.1) in the frequency of the G1961E and D2177N alleles in patients with AMD (2.2%) vs controls (1.0%). In contrast, there was a significant difference (P<.001) in the frequency of the G1961E alleles between normal individuals of Somali ancestry (11.3%) and normal individuals from other populations (0.4%). There was no evidence of cosegregation of these alleles and the AMD phenotype in the 5 multiplex families with AMD examined. These two ABCA4 alleles were slightly more frequent in patients with AMD with choroidal neovascularization (2.7%) than those without this complication (2.5%).
Conclusions Somali ancestry is more than 100 times more strongly associated with presence of the G1961E allele than the AMD phenotype. This study did not find any statistically significant evidence for involvement of the G1961E or D2177N alleles of the ABCA4 gene in AMD.
Clinical Relevance The ABCA4 gene is definitively involved in the pathogenesis of Stargardt disease and some cases of photoreceptor degeneration. However, it does not seem to be involved in a statistically significant fraction of AMD cases.
non-us government, protein, phs, phenotype, patients, analysis, pedigree, macular degeneration, polymerase chain reaction, research support, pathology, aged, dna mutational analysis, dna, middle aged, 80 and over, digestion, ethnic groups, blood, variation (genetics), population, single-stranded conformational, polymorphism, time, codon, human, rod outer segments, role, atp-binding cassette transporters, male, disease, genetics, diagnosis, us government, family, adult, secondary, humans, female, methods, alleles
0003-9950
745-751
Guymer, Robyn H.
ce21dd40-50d0-439a-bb21-b8ad044a721c
Héon, Elise
0d4c27a1-cd38-4f57-90a3-5344457bd572
Lotery, Andrew J.
5ecc2d2d-d0b4-468f-ad2c-df7156f8e514
Munier, Francis L.
76e1c861-34a2-4da1-a28e-86cd55042760
Schorderet, Daniel F.
80153f17-2467-4560-85a9-d0b41bae9226
Baird, Paul N.
e65a0168-2132-4e75-88ef-f76698ec1f4e
McNeil, Robyn J.
feb041e6-9f81-47a5-8451-660ed8f8ff71
Haines, Heidi
386df9c9-bb6a-4ed6-aa9c-e6e359842dfc
Sheffield, Val C.
c1a1f2fe-b32b-494e-bd82-b1d90c0563fa
Stone, Edwin M.
545dc2cf-5ba2-4c9d-95aa-e22218c323c5
Guymer, Robyn H.
ce21dd40-50d0-439a-bb21-b8ad044a721c
Héon, Elise
0d4c27a1-cd38-4f57-90a3-5344457bd572
Lotery, Andrew J.
5ecc2d2d-d0b4-468f-ad2c-df7156f8e514
Munier, Francis L.
76e1c861-34a2-4da1-a28e-86cd55042760
Schorderet, Daniel F.
80153f17-2467-4560-85a9-d0b41bae9226
Baird, Paul N.
e65a0168-2132-4e75-88ef-f76698ec1f4e
McNeil, Robyn J.
feb041e6-9f81-47a5-8451-660ed8f8ff71
Haines, Heidi
386df9c9-bb6a-4ed6-aa9c-e6e359842dfc
Sheffield, Val C.
c1a1f2fe-b32b-494e-bd82-b1d90c0563fa
Stone, Edwin M.
545dc2cf-5ba2-4c9d-95aa-e22218c323c5

Guymer, Robyn H., Héon, Elise, Lotery, Andrew J., Munier, Francis L., Schorderet, Daniel F., Baird, Paul N., McNeil, Robyn J., Haines, Heidi, Sheffield, Val C. and Stone, Edwin M. (2001) Variation of codons 1961 and 2177 of the Stargardt disease gene is not associated with age-related macular degeneration. Archives of Ophthalmology, 119 (5), 745-751.

Record type: Article

Abstract

Objectives To investigate the role of 2 specific alleles of the Stargardt disease gene (ABCA4) in the pathogenesis of age-related macular degeneration (AMD). Secondary objectives were to investigate differences in frequency of the G1961E allele in selected ethnic groups as well as to examine the segregation of both G1961E and D2177N alleles in 5 multiplex families with AMD.
Methods Five hundred forty-four patients with AMD and 689 controls were ascertained from 3 continents. Blood samples from 62 normal individuals of Somalian ancestry were also obtained. Participants were screened for the presence of these ABCA4 alleles with a combination of restriction digestion and single-strand conformation polymorphism analysis of polymerase chain reaction amplification products. Detected alleles were confirmed by DNA sequencing. The number of subjects exhibiting the G1961E or D2177N variants were compared between AMD and control groups using a 2-tailed Fisher exact test.
Results There was no significant difference (P>.1) in the frequency of the G1961E and D2177N alleles in patients with AMD (2.2%) vs controls (1.0%). In contrast, there was a significant difference (P<.001) in the frequency of the G1961E alleles between normal individuals of Somali ancestry (11.3%) and normal individuals from other populations (0.4%). There was no evidence of cosegregation of these alleles and the AMD phenotype in the 5 multiplex families with AMD examined. These two ABCA4 alleles were slightly more frequent in patients with AMD with choroidal neovascularization (2.7%) than those without this complication (2.5%).
Conclusions Somali ancestry is more than 100 times more strongly associated with presence of the G1961E allele than the AMD phenotype. This study did not find any statistically significant evidence for involvement of the G1961E or D2177N alleles of the ABCA4 gene in AMD.
Clinical Relevance The ABCA4 gene is definitively involved in the pathogenesis of Stargardt disease and some cases of photoreceptor degeneration. However, it does not seem to be involved in a statistically significant fraction of AMD cases.

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More information

Published date: 2001
Keywords: non-us government, protein, phs, phenotype, patients, analysis, pedigree, macular degeneration, polymerase chain reaction, research support, pathology, aged, dna mutational analysis, dna, middle aged, 80 and over, digestion, ethnic groups, blood, variation (genetics), population, single-stranded conformational, polymorphism, time, codon, human, rod outer segments, role, atp-binding cassette transporters, male, disease, genetics, diagnosis, us government, family, adult, secondary, humans, female, methods, alleles

Identifiers

Local EPrints ID: 24734
URI: http://eprints.soton.ac.uk/id/eprint/24734
ISSN: 0003-9950
PURE UUID: ffa99057-0582-4603-bcaf-f7511d3f8e11
ORCID for Andrew J. Lotery: ORCID iD orcid.org/0000-0001-5541-4305

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Date deposited: 05 Apr 2006
Last modified: 23 Jul 2022 01:51

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Contributors

Author: Robyn H. Guymer
Author: Elise Héon
Author: Francis L. Munier
Author: Daniel F. Schorderet
Author: Paul N. Baird
Author: Robyn J. McNeil
Author: Heidi Haines
Author: Val C. Sheffield
Author: Edwin M. Stone

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