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On the use of agents in a bioInformatics grid

On the use of agents in a bioInformatics grid
On the use of agents in a bioInformatics grid
MyGrid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows through personalisation, notification of change and publication of experiments. In this paper, we describe the architecture of myGrid and how it will be used by the scientist. We then show how myGrid can benefit from agents technologies. We have identified three key uses of agent technologies in myGrid: user agents, able to customize and personalise data, agent communication languages offering a generic and portable communication medium, and negotiation allowing multiple distributed entities to reach service level agreements.
653-661
Moreau, Luc
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Miles, Simon
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Greenwood, Mark
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Dialani, Vijay
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Addis, Matthew
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Alpdemir, Nedim
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Cawley, Richard
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De Roure, David
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Ferris, Justin
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Li, Peter
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Oinn, Tom
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Paton, Norman
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Pettifer, Stephen
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Radenkovic, Milena V.
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Roberts, Angus
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Robinson, Alan
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Rodden, Tom
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Wipat, Anil
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Matsuoka, Satoshi
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Sato, Mitsuhisa
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Moreau, Luc
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Miles, Simon
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Goble, Carole
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Greenwood, Mark
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Dialani, Vijay
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Addis, Matthew
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Alpdemir, Nedim
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Cawley, Richard
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De Roure, David
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Gaizauskas, Rob
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Greenhalgh, Chris
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Li, Peter
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Liu, Xiaojian
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Lord, Phillip
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Luck, Michael
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Marvin, Darren
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Oinn, Tom
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Paton, Norman
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Pettifer, Stephen
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Radenkovic, Milena V.
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Roberts, Angus
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Robinson, Alan
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Rodden, Tom
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Stevens, Robert
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Warboys, Brian
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Wipat, Anil
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Wroe, Chris
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Lee, Sangsan
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Sekguchi, Satoshi
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Matsuoka, Satoshi
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Sato, Mitsuhisa
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Moreau, Luc, Miles, Simon, Goble, Carole, Greenwood, Mark, Dialani, Vijay, Addis, Matthew, Alpdemir, Nedim, Cawley, Richard, De Roure, David, Ferris, Justin, Gaizauskas, Rob, Glover, Kevin, Greenhalgh, Chris, Li, Peter, Liu, Xiaojian, Lord, Phillip, Luck, Michael, Marvin, Darren, Oinn, Tom, Paton, Norman, Pettifer, Stephen, Radenkovic, Milena V., Roberts, Angus, Robinson, Alan, Rodden, Tom, Senger, Martin, Sharman, Nick, Stevens, Robert, Warboys, Brian, Wipat, Anil and Wroe, Chris (2003) On the use of agents in a bioInformatics grid. Lee, Sangsan, Sekguchi, Satoshi, Matsuoka, Satoshi and Sato, Mitsuhisa (eds.) 3rd IEEE/ACM CCGRID 2003 Workshop on Agent Based Cluster and Grid Computing, , Tokyo, Japan. 12 - 15 May 2003. pp. 653-661 . (doi:10.1109/CCGRID.2003.1199344).

Record type: Conference or Workshop Item (Paper)

Abstract

MyGrid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows through personalisation, notification of change and publication of experiments. In this paper, we describe the architecture of myGrid and how it will be used by the scientist. We then show how myGrid can benefit from agents technologies. We have identified three key uses of agent technologies in myGrid: user agents, able to customize and personalise data, agent communication languages offering a generic and portable communication medium, and negotiation allowing multiple distributed entities to reach service level agreements.

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More information

Published date: 2003
Venue - Dates: 3rd IEEE/ACM CCGRID 2003 Workshop on Agent Based Cluster and Grid Computing, , Tokyo, Japan, 2003-05-12 - 2003-05-15
Organisations: Web & Internet Science
Learn more about Electronics & Computer Science research

Identifiers

Local EPrints ID: 257645
URI: http://eprints.soton.ac.uk/id/eprint/257645
DOI: doi:10.1109/CCGRID.2003.1199344
PURE UUID: 5072838b-3f0b-4d50-9c49-69af29eff244
ORCID for Luc Moreau: ORCID iD orcid.org/0000-0002-3494-120X
ORCID for David De Roure: ORCID iD orcid.org/0000-0001-9074-3016

Catalogue record

Date deposited: 13 Jun 2003
Last modified: 14 Mar 2024 06:00

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Contributors

Author: Luc Moreau ORCID iD
Author: Simon Miles
Author: Carole Goble
Author: Mark Greenwood
Author: Vijay Dialani
Author: Matthew Addis
Author: Nedim Alpdemir
Author: Richard Cawley
Author: David De Roure ORCID iD
Author: Justin Ferris
Author: Rob Gaizauskas
Author: Kevin Glover
Author: Chris Greenhalgh
Author: Peter Li
Author: Xiaojian Liu
Author: Phillip Lord
Author: Michael Luck
Author: Darren Marvin
Author: Tom Oinn
Author: Norman Paton
Author: Stephen Pettifer
Author: Milena V. Radenkovic
Author: Angus Roberts
Author: Alan Robinson
Author: Tom Rodden
Author: Martin Senger
Author: Nick Sharman
Author: Robert Stevens
Author: Brian Warboys
Author: Anil Wipat
Author: Chris Wroe
Editor: Sangsan Lee
Editor: Satoshi Sekguchi
Editor: Satoshi Matsuoka
Editor: Mitsuhisa Sato

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