apa nih pmc

SUMMARY: The concept underlying the OAI metadata harvesting protocol is that local, distributed, content-provider sites each provide their own content and global service-provider sites harvest that content and provide global services over it, such as indexing, search, and other added values. (This is not a symmetric process. It does not make sense to think of the individual content-providers as "harvesting" their own content (back) from global service-providers.)

The question is accordingly whether OA deposit mandates should be (1) convergent, with both institutional and funder mandates requiring deposit in the author's own OA Institutional Repository (IR), for harvesting by global overlay OA services and collections (such as PubMed Central, PMC) or (2) divergent, requiring authors to deposit all over the map, locally or distally, possibly multiple times, depending on field and funding. It seems obvious that coordinated, convergent IR deposit mandates from both institutions and funders will bring universal OA far more surely and swiftly than needless and counterproductive divergence.

In the interests of a swift, seamless, systematic, global transition to universal OA, NIH should accordingly make one tiny change (entailing no loss at all in content or functionality) in its otherwise invaluable, historic, and much-imitated mandate: NIH should mandate IR deposit and harvest to PMC from there.

The spirit of the Congressional directive that publicly funded research should be made publicly accessible online, free for all, is fully met once everyone, webwide, can click on the link to an item whose metadata they have found in PMC, and the article instantly appears, just as if they had retrieved it via Google, regardless of whether the item's URL happens to be in an IR or in PMC itself.

For preservation, the definitive document needs to be deposited in an archival depository (preferably several, for safe-keeping, updating and migration as technology evolves), not an OA collection like PMC. But that essential archival deposit/preservation function has absolutely nothing to do with either the author or with OA.

Peter Suber: "At the moment, I see two conflicting APA statements and no evidence that either statement [2002 or 2008] took the other into account. So I'm still waiting for a definitive clarification from the APA. But as I say, if the APA reaffirms the 2002 policy to allow no-fee, no-embargo self-archiving to IRs, then I will applaud it."

[See APA update, which appeared after this posting. Peter has since responded to that update too. The only point to add is that Stuart Shieber's concern about a remaining ambiguity in yet another APA document will no doubt likewise be resolved in the same way. Stuart was the architect of Harvard FAS's institutional OA mandate and has since been appointed director of Harvard's newly formed Office for Scholarly Communication.]

It seems obvious to me that the only coherent resolution is that the APA's 2002 Green OA policy takes precedence over the contradictory passages in its 2008 PMC addendum. It would be arbitrary bordering on dementia to declare that:

"Our policy is that any APA author may self-archive their own refereed final draft in their own IR for free as long they are not mandated to do so by NIH; but if they are mandated to do so by NIH, then they must pay us $2500 to do it!"

"All we meant was that, as before, any APA author may self-archive their own refereed final draft in their own IR for free, but depositing APA's proprietary published version in PMC will cost $2500."

And then they will back down from the surcharge altogether. (I do have a bit of a track-record for correctly second-guessing APA policy!)

Peter Suber: "However, if the APA retains the "deposit fee" for NIH-funded authors, then I will continue to criticize it. The APA will still be charging for green OA, which is utterly unnecessary."

Do continue to criticize it, Peter, but please make sure the criticism is on target: As long as APA authors are free to provide green OA by depositing in their own IRs, APA can definitely not be said to be "charging for green OA" if APA charges authors for depositing in PMC (any more than I can be said to be charging for water if I say "water is free but bring your own container" and you insist on water in a container).

The $2500 fee is indeed absurd, but that absurdity (and a many other counterproductive consquences) would be completely remedied by NIH's simply dropping its supererogatory requirement to deposit directly in PMC, and harvesting the metadata from the IRs instead. A central collection like PMC is just that: a collection. It is sufficient for such collections to harvest the metadata (as Google does) and to link to the full-text where it is actually deposited, i.e., the IR of the institution it came from.

Peter Suber: "[APA] will still fail to deliver immediate OA, or OA to the published edition, which fee-based [Gold or optional-Gold] OA journals always deliver in exchange for their fees."

You mean the publisher's proprietary version? But even the NIH mandate is only requiring deposit of the author's final refereed draft, not the publisher's proprietary version:

The Director of the National Institutes of Health shall require that all investigators funded by the NIH submit or have submitted for them to the National Library of Medicine’s PubMed Central an electronic version of their final, peer-reviewed manuscripts upon acceptance for publication, to be made publicly available no later than 12 months after the official date of publication: Provided, That the NIH shall implement the public access policy in a manner consistent with copyright law.

I also think you may be equating the $2500 fee with a (hybrid) optional-Gold OA fee (from a non-Green publisher such as ACS). But it is not that. APA's is a PMC deposit fee, from a Green publisher. (There is no relevant category for a requirement to deposit in a 3rd-party CR, because it is arbitrary to have to do so, and has nothing to do with OA itself, which APA authors can already provide via Green OA in their own IRs.)

Moreover, to heap absurdity upon absurdity, we both know, Peter, that (1) not only does it not matter one bit, for OA accessibility to one and all, webwide, whether a document's locus is an IR or a CR, but (2) if and when all of OA's target content is made OA, one way or the other, then the distinction between 1st-party (author-institution), 2nd-party (publisher) and 3rd party (PMC, UKPMC, EuroPMC, Google, or any other CR) archiving becomes irrelevant, the game is over, universal OA has at last arrived, and all these trivial locus and party details as well as this absurd talk of deposit surcharges becomes moot.

The problem is with first reaching that universal OA, which is already long, long overdue (after many, many false starts, including a prior one by NIH itself, 3 years ago, which elicited a compliance rate below 4%, less than a third of the global average for spontaneous -- i.e., unmandated -- self-archiving.)

And coordinated, convergent IR deposit mandates -- funder mandates complementing institutional mandates -- will get us there far more surely and swiftly than the needless and counterproductive divergence we have imposed on ourselves by not thinking the PMC locus stipulation through in advance (or fixing it as it becomes more and more apparent that it creates unanticipated and unnecessary problems).

Peter Suber: "If the APA reaffirms its 2002 green policy, then NIH-funded authors could bypass the deposit fee when self-archiving to their IRs. But they couldn't bypass the fee when self-archiving to PMC, and they are bound by the NIH policy to deposit in PMC (or have their journal do so for them)."

Correct, but isn't this reasoning a bit circular, if not fatalistic? Which one is cluttering the path to universal OA (now that we have the invaluable NIH mandate)? APA, which blesses OA self-archiving in the author's own OA IR, for free, or NIH, which (unnecessarily) insists on mandating more than "merely" OA?

Would it not be better for NIH to think it through, and then -- patiently, in the interests of a swift, seamless, systematic, global progression to universal OA -- make in its otherwise invaluable, historic, and much-imitated mandate the one tiny change that (with no loss at all in content or functionality) will create the optimal conditions for a full-scale transition to universal OA, rather than only (the NIH/PMC) part of it?

Peter Suber: "Stevan hopes that policies like the APA's will pressure the NIH to drop this requirement and allow deposits in an IR to suffice. But even if that ought to happen, it won't happen soon and very likely won't happen at all. One reason is simply that the requirement to deposit in PMC was mandated by Congress. The NIH undoubtedly supports the Congressional directive, but it's not an in-house policy decision that the agency is free to reverse at will."

Deposits in IRs can be harvested into PMC. The issue here is merely the locus of the point of direct deposit.

Does anyone imagine that the spirit of the Congressional directive -- to the effect that publicly funded research should be made publicly accessible online, free for all -- would not be fully met once everyone, webwide, can click on the link to an item whose metadata they have retrieved from PMC, and the article instantly appears, just as if they had retrieved it via Google, but the item's URL happens to be in an IR rather than in PMC!

Access Archiving or Preservation Archiving? One discerns the dead hand of digital preservationists here, pushing their worthy but distinct agenda, oblivious to the fact that the content they seek to preserve is mostly not even OA yet, and that the version that NIH has (rightly) stipulated for OA deposit (each "investigator's... electronic version of their final, peer-reviewed manuscripts upon acceptance for publication") is not even the draft that is in the real need of preservation, but just a supplementary copy, provided for access purposes: The definitive version, the one that really stands in need of preservation, is not this author-copy but the original itself: the publisher's official proprietary version of record. But is it not crucial, here especially, to raise the fundamental question: Is the NIH mandate an access mandate or is it a preservation mandate? For preservation, one needs to deposit a (digital and analog) original in an archival depository (preferably several, for safe-keeping, updating and migration as technology evolves), not an OA collection like PMC. That essential archival deposit/preservation function has absolutely nothing to do with either the author or with OA, and APA would certainly have no problem with a digital deposit requirement like that...

Peter Suber: "But should Congress and the NIH prefer PMCs to IRs? Maybe, maybe not. I see good arguments on both sides."

For OA functionality, the locus of deposit makes zero difference. For preservation, OA is beside the point and unnecessary. But for OA content-provision itself -- and not just for NIH-funded content, but for all of OA's target content, across all disciplines, institutions and nations -- locus of deposit matters enormously. There's no functionality without content. And I know of no good argument at all in favor of institution-external direct deposit, insofar as OA content-provision is concerned; only a lot of good arguments against it.

Peter Suber: "But they are irrelevant here because (1) the APA deposit fee would still [be] unnecessary"

Why is it just APA's absurd $2500 fee for PMC deposit that is singled out as being unnecessary (given that the APA is Green on free OA IR deposit): Is NIH's gratuitous stipulation of PMC deposit not likewise unnecessary (for OA)?

(This question is all the more germane given that the global transition to universal OA stands to benefit a lot more from NIH's dropping its gratuitous (and alas much imitated) deposit-locus stipulation than from APA's dropping its absurd bid for a PMC deposit fee.)

Peter Suber: "(2) there's no evidence that the APA was motivated, as Stevan is, to protest the preference for PMC --as opposed to (say) mandatory OA."

But I never said the APA was motivated to protest the preference for PMC! That really would be absurd. I am certain that APA (and every other non-OA publisher) is none too thrilled about either author self-archiving or mandatory OA, anywhere, in any form!

But APA nevertheless did the responsible thing, and bit the bullet on formally endorsing institutional self-archiving. There's no (OA) reason they should have to bite it on institution-external, 3rd-party archiving in PMC too (even though the distinction will eventually be mooted by universal OA) -- though the response of the OA community, if directed, myopically, at APA alone, and not NIH, will no doubt see to it that they will.

Frankly, I think APA just saw an opportunity to try to make a buck, and maybe also to put the brakes on an overall process that they saw as threatening to their current revenue streams. Can't blame them for thinking that; it may turn out to be true. But as long as they're Green, they're "gold," as far as OA is concerned (though, to avoid conflicting terminology, let us just say they are "on the side of the angels").

Peter Suber: "(For the record, my position is close to Stevan's: institutional and disciplinary repositories should harvest from one another; that would greatly lower the stakes in the question where an OA mandate should require initial deposit; if we got that far, I'd be happy to see a policy require deposit in IRs.)"

The issue is whether deposit mandates should be convergent -- requiring all authors to deposit in their own OA IRs, for harvesting by global overlay OA services and collections therefrom -- or divergent, requiring authors to deposit all over the map, possibly multiply, depending on field and funding, possibly necessitating "reverse-harvesting," with each institution's software having to trawl the web, looking to retrieve its own institutional output, alas deposited institution-externally.

(That last is not really "harvesting" at all; rather, it involves a functional misunderstanding of the very concept of harvesting: The OAI concept is that there are local content-providers and global service-providers. Content-providers are local and distributed, each providing its own content -- in this case, institutional IRs. Then there are service-providers, who harvest that content [or just the content's metadata and URL] from the distributed, interoperable content-providers, and provide global services on it, such as indexing, search, and other added values. This is not a symmetric process. It does not make sense to think of the content-providers as "harvesting" their own content (back) from the service-providers! Another way to put this is that -- although it was not evident at the time -- OAI-interoperability really meant the end of the need for "central repositories" (CRs) for direct deposit. Now there would just be central collections (services), harvested from distributed local content-providers. No need to deposit distally. And certainly no sense in depositing distally only to "harvest" it back home again! Institutional content-provision begins and ends with the institution's own local IR; the rest is just global, webwide harvesting and service-provision.)

Peter Suber: "Stevan does call the deposit fee absurd. So we agree on that as well. But he adds that the NIH preference for PMC over IRs "reduced us to this absurdity". I'm afraid that's absurd too. If the NIH preference for PMC somehow compelled publishers to respond with deposit fees, then we'd see many of them. But in fact we see almost none."

(1) Of course APA's $2500 deposit fee is absurd. But -- given that APA is Green on OA, and given the many reasons why convergent IR deposit, mandated by institutions as well as funders, not only makes more sense but is far more likely to scale up, coherently and systematically, to universal OA across disciplines, institutions and nations than divergent willy-nilly deposit of institutional content here, there and everywhere -- I welcome this absurd outcome (the $2500 PMC deposit fee) and hope the reductio ad absurdum it reveals helps pinpoint (and fix) the real source of the absurdity, which is not APA's wistful surcharge, but NIH's needless insistence on direct deposit institution-externally in PMC.

(2) I have no idea whether the OA community's hew and cry about the $2500 APA surcharge for PMC deposit will be targeted exclusively at APA (and any other publishers that get the same bright idea), forcing them to withdraw it, while leaving the dysfunctional NIH constraint on locus of deposit in place.

(3) I hope, instead, that the OA community will have the insight to target NIH's constraint on deposit locus as well, so as to persuade NIH to optimize its widely-imitated policy in the interests of its broader implications for the prospects of global OA -- one small step for NIH but a giant leap for mankind -- by fixing the one small bug in an otherwise brilliant policy.

Peter Suber: "Even if the NIH preference for PMC were a choice the agency could reverse at will, the APA deposit fee is another choice, not necessitated by the NIH policy and not justified by it."

Where there's a will, there's a way, and here it's an extremely simple way, a mere implementational detail: Instead of depositing directly in PMC, authors deposit in their IRs and send PMC the URL. If NIH adopted that, the APA's PMC deposit surcharge bid would instantly become moot.

If the furor evoked by the APA $2500 surcharge proved to be the factor that managed to inspire NIH to take the rational step that rational argument alone has so far been powerless to inspire, then that will be a second (unintentional) green feather in APA's cap, and another of the ironies and absurdities of our long, somnambulistic trek toward the optimal and inevitable outcome for scientific and scholarly research.

In Open Access News, my comrade-at-arms, Peter Suber commented on my essay "In Defense of the American Psychological Association's Green OA Policy," which defended the APA from criticism for levying a $2500 fee on authors for compliance with the NIH mandate to deposit in PubMed Central (PMC). I had said the problem was with NIH's stipulation that the deposit had to be in PMC rather than in the author's own Institutional Repository (IR): Though initially opposed in 1996, APA has since 2002 been solidly among the majority of publishers that are Green on OA self-archiving, meaning they explicitly endorse deposit in the author's own institutional IR immediately upon acceptance for publication, with no fee (exactly as all publishers ought to be doing). Moreover, APA has now re-confirmed (see below) that it has no intention of back-sliding on that 6-year-old green policy (as Nature Publishing Group did 3 years ago, immediately upon the impending announcement of the NIH policy).

Peter Suber: "Stevan is mixing up unrelated issues. The APA "deposit fee" had nothing to do with the distinction between disciplinary repositories (like PMC) and institutional repositories. If the NIH mandated deposit in IRs instead of PMC, then the APA would demand a $2,500 fee for deposit in IRs, and the fee would be equally noxious and indefensible. Even if the NIH's preference for PMC were as foolish as Stevan says it is (a criticism I do not share), it would not justify the APA fee."

Peter seems to be replying with a hypothetical conditional, regarding what the APA would have done. But the APA has already been formally endorsing immediate Open Access self-archiving in the author's own IR for six years now. Moreover (see below), the publisher, Gary Vandenbos, has confirmed that APA has not changed that policy, nor are there plans to change it.

What needs to be changed is just one small implementational detail of NIH's Public Access Policy: the requirement to deposit directly in PMC. The locus of deposit should be the author's own IR. PMC can harvest the metadata and link to the full-text in the IR. This will cost NIH authors nothing. APA itself has no plans to repeal its commendable 6-year-old Green OA self-archiving policy. (It would certainly have put APA in a very bad light if, having given its authors the green light to self-archive in their own IRs, APA then decided to slap a $2500 traffic ticket on them for going ahead and doing so!)

Subject: In Defense of the American Psychological Association's Green OA Policy

As long as APA does not dream of back-sliding on its 6-year green OA policy on institutional self-archiving, you can count on my firm support in the forthcoming onslaught from OA advocates worldwide, and you will weather the storm and come out looking good.

Steven, I expect no change in the existing policy. Have not ever heard anyone suggest it.

Splendid. Expect a spirited (and successful) defense that will leave APA looking benign and responsible (as it indeed is). The problem is in the well-meaning juggernauts (in this case, NIH OA policy-makers) that simply do not think things through.

Peter Suber: "Stevan points to a 2002 APA policy statement, still online, which allows self-archiving in IRs. But he doesn't point out that the APA's newer policy statement describing the "deposit fee" effectively negates the older green policy, at least for NIH-funded authors. The new policy prohibits NIH-funded authors from depositing their postprints in any OA repository, disciplinary or institutional."

The 2002 APA policy statement is not only still online and still in effect, but we have the publisher's word that there is to be no change in that policy. The proposed fee only pertains to deposit in PMC.

APA Policy on Posting Articles on the Internet ...Update effective June 1, 2002...Authors of articles published in APA journals may post a copy of the final manuscript... on their Web site or their employer's server after it is accepted for publication... APA does not permit archiving with any other non-APA repositories...

Peter Suber: "The title of Stevan's post suggests that he's defending the APA's 2002 self-archiving policy. I join him in that. But the body of his post attempts to defend the 2008 deposit fee as well: "Although it looks bad on the face of it...things are not always as they seem." Not always, but this time."

Not this time, and never for a publisher that is Green on OA. Once a publisher is Green on OA, there is nothing more that can or should be demanded of them, by the research community. The ball is now in the research community's court. It is up to research institutions and research funders to design sensible policies that will ensure that the researchers they employ and fund actually provide Green OA for their joint research output.

Not all research is funded (and certainly not all by NIH), but (virtually) all researchers have institutions. And all institutions are just a piece of free software, some server-space, and a few hours of sysad set-up and maintenance time away from having an IR, if they do not already have one.

The sensible OA mandate, from both institutions and funders (like NIH) is to require deposit in the researcher's own IR, immediately upon acceptance for publication. If there is an embargo, access to the deposit can be set as Closed Access during the embargo. The IR's "email eprint request" button will provide almost-immediate, almost-OA for all user needs during any embargo.

If funders or others want to create institution-external, central collections of already-OA content, based on subject matter, funding source, nationality, or whatever, then they can harvest the metadata and link to the full-text in the IR in which it was deposited. But there is certainly no reason to insist that it be deposited directly in their collections. Google, for example, quietly harvests everything: no need to deposit things directly in Google or Google Scholar. And no charge.

Peter Suber: "Both arguments are moot for a while, now that the APA has taken down the new policy statement for "re-examination". (See the 7/16/08 update to my blog post on the policy.)"

I don't doubt that well-meaning OA supporters who have not thought it through are now railing at APA instead of resolutely requesting that NIH make the minor modification in its otherwise admirable, timely, and welcome policy that would put an end to this nonsense and let researchers get on with the urgent task of providing OA by depositing their own research in their own OA IRs, free for all, webwide.

but it would be useful if the heads of OA advocates worldwide were focused, commensurately strongly, on using their growing influence to promote what will actually generate universal OA, swiftly and surely, rather than dissipating it on the short-sighted distractions -- such as Gold Fever, Preservation Panic, Copyright Compulsion, and, here, Supererogatory Centralism -- which are only delaying rather than facilitating OA:

(For the record, and the too literal-minded: Of course a $2500 fee for depositing in PMS is absurd, but what reduced us to this absurdity was needlessly mandating direct deposit in PMS in the first place. Time to remedy the absurdity and let researchers' fingers do the walking so we can all reach 100% OA at long last.)

There is no culprit in this nonsense, but if I had to pinpoint its provenance, it would be the foolish form in which the NIH -- despite relentlessly repeated advice and reasons to the contrary -- insisted on drafting its policy:

To cut to the quick, there is no earthly reason NIH should insist on direct deposit in PMC. The mandate should be (and should all along have been) to deposit in the author's own Institutional Repository (IR). PMC can then harvest the metadata and link to the IR-deposited full-text itself from there.

Authors of articles published in APA journals may post a copy of the final manuscript, as a word processing, PDF, or other type file, on their Web site or their employer's server after it is accepted for publication. The following conditions would prevail:

• The posted article must carry an APA copyright notice and include a link to the APA journal home page.

• Further, the posted article must include the following statement: "This article may not exactly replicate the final version published in the APA journal. It is not the copy of record."

• APA does not provide electronic copies of the APA published version for this purpose, and authors are not permitted to scan in the APA published version.

To repeat, a publisher that is Green on immediate OA self-archiving in the author's own IR is squarely on the side of the angels. (If that publisher seeks to profit from NIH's gratuitous insistence on institution-external deposit, by treating PMC as a 3rd-party free-loader or rival publisher, hence legally requiring permission or payment to re-publish, I would say that NIH drew that upon itself. As noted many times, that technicality does not work with an author's own institution.)

And it is remediable: Simply revise the NIH mandate to require institutional IR deposit of the accepted final draft, immediately upon acceptance (with a cap on the permissible embargo length, if any). That is the sensible policy -- and nature will take care of the rest, with universal OA just around the corner.