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Spatial phylodynamics of HIV-1 epidemic emergence in east Africa

Gray, R.R., Tatem, A.J., Lamers, S., Hou, W., Laeyendecker, O., Serwadda, D., Sewankambo, N., Gray, R.H., Wawer, M., Quinn, T.C., Goodenow, M.M. and Salemi, M. (2009) Spatial phylodynamics of HIV-1 epidemic emergence in east Africa AIDS, 23, (14), F9-F17. (PMID:19644346).

Record type: Article


DESIGN: We sought to investigate the evolutionary and historical reasons for the different epidemiological patterns of HIV-1 in the early epidemic. In order to characterize the demographic history of HIV-1 subtypes A and D in east Africa, we examined molecular epidemiology, geographical and historical data.

METHODOLOGY: We employed high-resolution phylodynamics to investigate the introduction of HIV-1A and D into east Africa, the geographic trends of viral spread, and the demographic growth of each subtype. We also used geographic information system data to investigate human migration trends, population growth, and human mobility. RESULTS: HIV-1A and D were introduced into east Africa after 1950 and spread exponentially during the 1970s, concurrent with eastward expansion. Spatiotemporal data failed to explain the establishment and spread of HIV based on urban population growth and migration. The low prevalence of the virus in the Democratic Republic of Congo before and after the emergence of the pandemic was, however, consistent with regional accessibility data, highlighting the difficulty in travel between major population centers in central Africa. In contrast, the strong interconnectivity between population centers across the east African region since colonial times has likely fostered the rapid growth of the epidemic in this locale.

CONCLUSION: This study illustrates how phylodynamic analysis of pathogens informed by geospatial data can provide a more holistic and evidence-based interpretation of past epidemics. We advocate that this 'landscape phylodynamics' approach has the potential to provide a framework both to understand epidemics' spread and to design optimal intervention strategies.

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Published date: September 2009
Keywords: africa, eastern, epidemiology, bayes theoremdisease outbreaks, emigration and immigration, statistics & numerical data trends, evolution, moleculargeographic information systems, HIV infections, virologyHIV-1, classification, genetics, humans phylogeny, population growth
Organisations: Geography & Environment, PHEW – P (Population Health)


Local EPrints ID: 344417
PURE UUID: 10a3348f-b4f3-4834-9333-74666c8d5f9a
ORCID for A.J. Tatem: ORCID iD

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Date deposited: 05 Nov 2012 16:15
Last modified: 04 Oct 2017 02:48

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Author: R.R. Gray
Author: A.J. Tatem ORCID iD
Author: S. Lamers
Author: W. Hou
Author: O. Laeyendecker
Author: D. Serwadda
Author: N. Sewankambo
Author: R.H. Gray
Author: M. Wawer
Author: T.C. Quinn
Author: M.M. Goodenow
Author: M. Salemi

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