Alignment of druglike compounds in lipid bilayers analyzed by solid-state19F-NMR and molecular dynamics, based on dipolar couplings of adjacent CF3 groups

Dürr, Ulrich H. N., Afonin, Sergii, Hoff, Barbara, de Luca, Giuseppina, Emsley, James W. and Ulrich, Anne S. (2012) Alignment of druglike compounds in lipid bilayers analyzed by solid-state19F-NMR and molecular dynamics, based on dipolar couplings of adjacent CF3 groups. The Journal of Physical Chemistry B, 116 (16), 4769-4782. (doi:10.1021/jp212339k). (PMID:22439912)

Abstract

Solid-state 19F-NMR spectroscopy is frequently used to analyze the structure and dynamics of lipophilic drugs and peptides embedded in biomembranes. The homonuclear dipolar couplings of trifluoromethyl (CF3) labels can provide valuable parameters such as orientational constraints and/or distances. To characterize the complex dipolar patterns of multiple 19F spin interactions, three different model compounds carrying two CF3 groups in meta-position on a phenyl ring were incorporated in macroscopically aligned DMPC bilayers. The dipolar patterns obtained with the CPMG (Carr–Purcell–Meiboom–Gill) multipulse sequence were analyzed to yield simultaneously the intra-CF3 and intergroup dipolar coupling values. The fluorine–fluorine distances were predicted by a density functional calculation, and the alignment of the labeled molecular segment could be determined from these distances and the dipolar coupling values. The different compounds were found to align in the lipid bilayer according to their amphiphilic properties, though with a weak anisotropic preference that is typical of solutes in liquid crystals. The residual dipolar couplings were used to calculate Saupe order parameters. For the least complex molecule, (CF3)2-BA, an orientational probability function for the solute in the lipid matrix could be derived. The overall description of how (CF3)2-BA is embedded in the bilayer was independently assessed by molecular dynamics simulations, and compared in structural and dynamical terms with the results of the NMR experiments.

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