Stability and membrane interactions of an autotransport protein: MD simulations of the Hia translocator domain in a complex membrane environment

Holdbrook, Daniel A., Piggot, Thomas J., Sansom, Mark S.P. and Khalid, Syma (2013) Stability and membrane interactions of an autotransport protein: MD simulations of the Hia translocator domain in a complex membrane environment. Biochimica et Biophysica Acta (BBA) - Biomembranes, 1828 (2), 715-723. (doi:10.1016/j.bbamem.2012.09.002). (PMID:22982599)

Abstract

Hia is a trimeric autotransporter found in the outer membrane of Haemphilus influenzae. The X-ray structure of Hia translocator domain revealed each monomer to consist of an ?-helix connected via a loop to a 4-stranded ?-sheet, thus the topology of the trimeric translocator domain is a 12-stranded ?-barrel containing 3 ?-helices that protrude from the mouth of the ?-barrel into the extracellular medium. Molecular dynamics simulations of the Hia monomer and trimer have been employed to explore the interactions between the helices, ?-barrel and connecting loops that may contribute to the stability of the trimer. In simulations of the Hia monomer we show that the central ?-helix may stabilise the fold of the 4-stranded ?-sheet. In simulations of the Hia trimer, a H-bond network involving residues in the ?-barrel, ?-helices and loops has been identified as providing stability for the trimeric arrangement of the monomers. Glutamine residues located in the loops connecting the ?-helices to the ?-barrel are orientated in a triangular arrangement such that each forms 2 hydrogen bonds to each of the corresponding glutamines in the other loops. In the absence of the loops, the ??barrel becomes distorted. Simulations show that while the trimeric translocator domain ?-barrel is inherently flexible, it is unlikely to accommodate the passenger domain in a folded conformation. Simulations of Hia in an asymmetric model of the outer membrane have revealed membrane–protein interactions that anchor the protein within its native membrane environment.

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Contributors

Author: Syma Khalid

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