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Group-regularized individual prediction: theory and application to pain

Group-regularized individual prediction: theory and application to pain
Group-regularized individual prediction: theory and application to pain
Multivariate pattern analysis (MVPA) has become an important tool for identifying brain representations of psychological processes and clinical outcomes using fMRI and related methods. Such methods can be used to predict or ‘decode’ psychological states in individual subjects. Single-subject MVPA approaches, however, are limited by the amount and quality of individual-subject data. In spite of higher spatial resolution, predictive accuracy from single-subject data often does not exceed what can be accomplished using coarser, group-level maps, because single-subject patterns are trained on limited amounts of often-noisy data. Here, we present a method that combines population-level priors, in the form of biomarker patterns developed on prior samples, with single-subject MVPA maps to improve single-subject prediction. Theoretical results and simulations motivate a weighting based on the relative variances of biomarker-based prediction—based on population-level predictive maps from prior groups—and individual-subject, cross-validated prediction. Empirical results predicting pain using brain activity on a trial-by-trial basis (single-trial prediction) across 6 studies (N = 180 participants) confirm the theoretical predictions. Regularization based on a population-level biomarker—in this case, the Neurologic Pain Signature (NPS)—improved single-subject prediction accuracy compared with idiographic maps based on the individuals' data alone. The regularization scheme that we propose, which we term group-regularized individual prediction (GRIP), can be applied broadly to within-person MVPA-based prediction. We also show how GRIP can be used to evaluate data quality and provide benchmarks for the appropriateness of population-level maps like the NPS for a given individual or study.
machine learning, statistical learning, pain, MVPA, empirical bayes, prediction, fMRI, mega-analysis, meta-analysis, shrinkage
274-287
Lindquist, Martin
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Krishnan, Anjali
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Lopez-Sola, Marina
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Jepma, Marieke
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Woo, Chong-Wan
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Koban, Leonie
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Roy, Mathieu
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Atlas, Lauren
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Schmidt, Liane
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Chang, Luke
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Reynolds Lozin, Elizabeth
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Eisenbarth, Hedwig
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Ashar, Yoni
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Delk, Elizabeth
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Wager, Tor
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Lindquist, Martin
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Krishnan, Anjali
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Lopez-Sola, Marina
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Jepma, Marieke
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Woo, Chong-Wan
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Koban, Leonie
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Roy, Mathieu
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Atlas, Lauren
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Schmidt, Liane
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Chang, Luke
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Reynolds Lozin, Elizabeth
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Eisenbarth, Hedwig
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Ashar, Yoni
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Delk, Elizabeth
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Wager, Tor
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Lindquist, Martin, Krishnan, Anjali, Lopez-Sola, Marina, Jepma, Marieke, Woo, Chong-Wan, Koban, Leonie, Roy, Mathieu, Atlas, Lauren, Schmidt, Liane, Chang, Luke, Reynolds Lozin, Elizabeth, Eisenbarth, Hedwig, Ashar, Yoni, Delk, Elizabeth and Wager, Tor (2017) Group-regularized individual prediction: theory and application to pain. NeuroImage, 145 (part B), 274-287. (doi:10.1016/j.neuroimage.2015.10.074). (PMID:26592808)

Record type: Article

Abstract

Multivariate pattern analysis (MVPA) has become an important tool for identifying brain representations of psychological processes and clinical outcomes using fMRI and related methods. Such methods can be used to predict or ‘decode’ psychological states in individual subjects. Single-subject MVPA approaches, however, are limited by the amount and quality of individual-subject data. In spite of higher spatial resolution, predictive accuracy from single-subject data often does not exceed what can be accomplished using coarser, group-level maps, because single-subject patterns are trained on limited amounts of often-noisy data. Here, we present a method that combines population-level priors, in the form of biomarker patterns developed on prior samples, with single-subject MVPA maps to improve single-subject prediction. Theoretical results and simulations motivate a weighting based on the relative variances of biomarker-based prediction—based on population-level predictive maps from prior groups—and individual-subject, cross-validated prediction. Empirical results predicting pain using brain activity on a trial-by-trial basis (single-trial prediction) across 6 studies (N = 180 participants) confirm the theoretical predictions. Regularization based on a population-level biomarker—in this case, the Neurologic Pain Signature (NPS)—improved single-subject prediction accuracy compared with idiographic maps based on the individuals' data alone. The regularization scheme that we propose, which we term group-regularized individual prediction (GRIP), can be applied broadly to within-person MVPA-based prediction. We also show how GRIP can be used to evaluate data quality and provide benchmarks for the appropriateness of population-level maps like the NPS for a given individual or study.

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Accepted/In Press date: 24 October 2015
e-pub ahead of print date: 17 November 2015
Published date: 15 January 2017
Keywords: machine learning, statistical learning, pain, MVPA, empirical bayes, prediction, fMRI, mega-analysis, meta-analysis, shrinkage
Organisations: Psychology

Identifiers

Local EPrints ID: 384801
URI: http://eprints.soton.ac.uk/id/eprint/384801
PURE UUID: f8eeff9a-7c4a-4ea2-bc7e-32b35599d78b
ORCID for Hedwig Eisenbarth: ORCID iD orcid.org/0000-0002-0521-2630

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Date deposited: 13 Jan 2016 10:32
Last modified: 15 Mar 2024 03:51

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Contributors

Author: Martin Lindquist
Author: Anjali Krishnan
Author: Marina Lopez-Sola
Author: Marieke Jepma
Author: Chong-Wan Woo
Author: Leonie Koban
Author: Mathieu Roy
Author: Lauren Atlas
Author: Liane Schmidt
Author: Luke Chang
Author: Elizabeth Reynolds Lozin
Author: Hedwig Eisenbarth ORCID iD
Author: Yoni Ashar
Author: Elizabeth Delk
Author: Tor Wager

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