Data for Image-based modelling of skeletal muscle oxygenation
Data for Image-based modelling of skeletal muscle oxygenation
This dataset is related to the publication:
Zeller-Plumhoff, B. (2017) 'Image-based modelling of skeletal muscle oxygenation', Royal Society Inteface
Folder test_case\constant\triSurface contains the .stl mesh files of the muscle cube and red blood cells within (for Figure 8).
The modelling files are created for execution with OpenFOAM (http://openfoam.com/). The LaplacianFoam solver was adapted by Keith Daly.
To execute, OpenFOAM needs to be installed and the folder "test" needs to be transferred to become a subfolder of the "OpenFOAM" folder. The solver then needs to be build using the "wmake" command. The folder "test_case" remains in the parent directory and should be renamed to "test".
The file "run.sh" can be executed to solve the equations. It may need to be adjusted to suit the executing system.
"test_5090.vtk" is the result file from executing run.sh in the test folder (in the parent directory). It can be opened in Paraview.
Fig9_1860x1524x500_8bit.raw contains the original dataset with which Figure 9 was created. This is the same dataset as displayed in Figure 7.
Fig9_1860x1524x500_8bit_segmented.raw is the segmentation of larger blood vessels, bulk muscle tissue and red blood cells from this dataset, based on which the isosurface rendering in Figure 9 was created.
Please contact berit.zeller-plumhoff@hzg.de for further questions.
University of Southampton
Zeller-Plumhoff, Berit, Martina Maria Dorothea
1a9d6525-3f1f-4a0b-89ba-e5042ceb37f4
Zeller-Plumhoff, Berit, Martina Maria Dorothea
1a9d6525-3f1f-4a0b-89ba-e5042ceb37f4
Zeller-Plumhoff, Berit, Martina Maria Dorothea
(2017)
Data for Image-based modelling of skeletal muscle oxygenation.
University of Southampton
doi:10.5258/SOTON/404926
[Dataset]
Abstract
This dataset is related to the publication:
Zeller-Plumhoff, B. (2017) 'Image-based modelling of skeletal muscle oxygenation', Royal Society Inteface
Folder test_case\constant\triSurface contains the .stl mesh files of the muscle cube and red blood cells within (for Figure 8).
The modelling files are created for execution with OpenFOAM (http://openfoam.com/). The LaplacianFoam solver was adapted by Keith Daly.
To execute, OpenFOAM needs to be installed and the folder "test" needs to be transferred to become a subfolder of the "OpenFOAM" folder. The solver then needs to be build using the "wmake" command. The folder "test_case" remains in the parent directory and should be renamed to "test".
The file "run.sh" can be executed to solve the equations. It may need to be adjusted to suit the executing system.
"test_5090.vtk" is the result file from executing run.sh in the test folder (in the parent directory). It can be opened in Paraview.
Fig9_1860x1524x500_8bit.raw contains the original dataset with which Figure 9 was created. This is the same dataset as displayed in Figure 7.
Fig9_1860x1524x500_8bit_segmented.raw is the segmentation of larger blood vessels, bulk muscle tissue and red blood cells from this dataset, based on which the isosurface rendering in Figure 9 was created.
Please contact berit.zeller-plumhoff@hzg.de for further questions.
Archive
ZellerPlumhoff_Review_RSocInterface_2016.zip
- Dataset
More information
Published date: 2017
Organisations:
Education Hub
Identifiers
Local EPrints ID: 404926
URI: http://eprints.soton.ac.uk/id/eprint/404926
PURE UUID: 80c3a5d0-ce66-457b-a2b6-c38b7c037b85
Catalogue record
Date deposited: 26 Jan 2017 09:25
Last modified: 04 Nov 2023 19:40
Export record
Altmetrics
Contributors
Creator:
Berit, Martina Maria Dorothea Zeller-Plumhoff
Download statistics
Downloads from ePrints over the past year. Other digital versions may also be available to download e.g. from the publisher's website.
View more statistics