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Diagnostic accuracy of a prototype rapid chlamydia and gonorrhoea recombinase polymerase amplification assay: a multicentre cross-sectional preclinical evaluation

Diagnostic accuracy of a prototype rapid chlamydia and gonorrhoea recombinase polymerase amplification assay: a multicentre cross-sectional preclinical evaluation
Diagnostic accuracy of a prototype rapid chlamydia and gonorrhoea recombinase polymerase amplification assay: a multicentre cross-sectional preclinical evaluation

Objectives: Rapid and accurate sexually transmitted infection diagnosis can reduce onward transmission and improve treatment efficacy. We evaluated the accuracy of a 15-minute run-time recombinase polymerase amplification–based prototype point-of-care test (TwistDx) for Chlamydia trachomatis (CT) and Neisseria gonorrhoeae (NG). 

Methods: Prospective, multicentre study of symptomatic and asymptomatic patients attending three English sexual health clinics. Research samples provided were additional self-collected vulvovaginal swab (SCVS) (female participants) and first-catch urine (FCU) aliquot (female and male participants). Samples were processed blind to the comparator (routine clinic CT/NG nucleic acid amplification test (NAAT)) results. Discrepancies were resolved using Cepheid CT/NG GeneXpert. 

Results: Both recombinase polymerase amplification and routine clinic NAAT results were available for 392 male and 395 female participants. CT positivity was 8.9% (35/392) (male FCU), 7.3% (29/395) (female FCU) and 7.1% (28/395) (SCVS). Corresponding NG positivity was 3.1% (12/392), 0.8% (3/395) and 0.8% (3/395). Specificity and positive predictive values were 100% for all sample types and both organisms, except male CT FCU (99.7% specificity (95% confidence interval (CI) 98.4–100.0; 356/357), 97.1% positive predictive value (95% CI 84.7–99.9; 33/34)). For CT, sensitivity was ≥94.3% for FCU and SCVS. CT sensitivity for female FCU was higher (100%; 95% CI, 88.1–100; 29/29) than for SCVS (96.4%; 95% CI, 81.7–99.9; 27/28). NG sensitivity and negative predictive values were 100% in FCU (male and female). 

Conclusions: This prototype test has excellent performance characteristics, comparable to currently used NAATs, and fulfils several World Health Organization ASSURED criteria. Its rapidity without loss of performance suggests that once further developed and commercialized, this test could positively affect clinical practice and public health.

Chlamydia trachomatis, Diagnostic accuracy, Neisseria gonorrhoeae, Nucleic acid amplification tests, Performance evaluation, Point of care
1198-743X
Harding-Esch, E.M.
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Fuller, S.S.
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Chow, S.L.C.
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Nori, A.V.
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Harrison, M.A.
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Parker, M.
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Piepenburg, O.
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Forrest, M.S.
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Brooks, D.G.
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Patel, R.
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Hay, P.E.
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Fearnley, N.
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Pond, M.J.
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Dunbar, J.K.
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Butcher, P.D.
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Planche, T.
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Lowndes, C.M.
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Sadiq, S.T.
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Harding-Esch, E.M.
85573746-9eaa-4f9b-a9c5-1f793f87014d
Fuller, S.S.
aaf3f09c-b3b5-48f4-bf49-c366b0da3c21
Chow, S.L.C.
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Nori, A.V.
c8d88ddc-962f-4c35-9252-2e4103037e17
Harrison, M.A.
797cd095-c2d9-42ad-a318-194050f50a9d
Parker, M.
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Piepenburg, O.
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Forrest, M.S.
194468e8-582e-4f13-9d68-53d3c7928e87
Brooks, D.G.
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Patel, R.
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Hay, P.E.
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Fearnley, N.
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Pond, M.J.
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Dunbar, J.K.
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Butcher, P.D.
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Planche, T.
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Lowndes, C.M.
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Sadiq, S.T.
8734140d-4de3-4800-bbcc-3e28aadb4341

Harding-Esch, E.M., Fuller, S.S., Chow, S.L.C., Nori, A.V., Harrison, M.A., Parker, M., Piepenburg, O., Forrest, M.S., Brooks, D.G., Patel, R., Hay, P.E., Fearnley, N., Pond, M.J., Dunbar, J.K., Butcher, P.D., Planche, T., Lowndes, C.M. and Sadiq, S.T. (2018) Diagnostic accuracy of a prototype rapid chlamydia and gonorrhoea recombinase polymerase amplification assay: a multicentre cross-sectional preclinical evaluation. Clinical Microbiology and Infection. (doi:10.1016/j.cmi.2018.06.003).

Record type: Article

Abstract

Objectives: Rapid and accurate sexually transmitted infection diagnosis can reduce onward transmission and improve treatment efficacy. We evaluated the accuracy of a 15-minute run-time recombinase polymerase amplification–based prototype point-of-care test (TwistDx) for Chlamydia trachomatis (CT) and Neisseria gonorrhoeae (NG). 

Methods: Prospective, multicentre study of symptomatic and asymptomatic patients attending three English sexual health clinics. Research samples provided were additional self-collected vulvovaginal swab (SCVS) (female participants) and first-catch urine (FCU) aliquot (female and male participants). Samples were processed blind to the comparator (routine clinic CT/NG nucleic acid amplification test (NAAT)) results. Discrepancies were resolved using Cepheid CT/NG GeneXpert. 

Results: Both recombinase polymerase amplification and routine clinic NAAT results were available for 392 male and 395 female participants. CT positivity was 8.9% (35/392) (male FCU), 7.3% (29/395) (female FCU) and 7.1% (28/395) (SCVS). Corresponding NG positivity was 3.1% (12/392), 0.8% (3/395) and 0.8% (3/395). Specificity and positive predictive values were 100% for all sample types and both organisms, except male CT FCU (99.7% specificity (95% confidence interval (CI) 98.4–100.0; 356/357), 97.1% positive predictive value (95% CI 84.7–99.9; 33/34)). For CT, sensitivity was ≥94.3% for FCU and SCVS. CT sensitivity for female FCU was higher (100%; 95% CI, 88.1–100; 29/29) than for SCVS (96.4%; 95% CI, 81.7–99.9; 27/28). NG sensitivity and negative predictive values were 100% in FCU (male and female). 

Conclusions: This prototype test has excellent performance characteristics, comparable to currently used NAATs, and fulfils several World Health Organization ASSURED criteria. Its rapidity without loss of performance suggests that once further developed and commercialized, this test could positively affect clinical practice and public health.

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Accepted/In Press date: 1 June 2018
e-pub ahead of print date: 12 June 2018
Keywords: Chlamydia trachomatis, Diagnostic accuracy, Neisseria gonorrhoeae, Nucleic acid amplification tests, Performance evaluation, Point of care

Identifiers

Local EPrints ID: 422602
URI: http://eprints.soton.ac.uk/id/eprint/422602
ISSN: 1198-743X
PURE UUID: baa8134e-abae-4fdd-b458-20d74ebd8e6c

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Date deposited: 26 Jul 2018 16:30
Last modified: 17 Mar 2024 12:08

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Contributors

Author: E.M. Harding-Esch
Author: S.S. Fuller
Author: S.L.C. Chow
Author: A.V. Nori
Author: M.A. Harrison
Author: M. Parker
Author: O. Piepenburg
Author: M.S. Forrest
Author: D.G. Brooks
Author: R. Patel
Author: P.E. Hay
Author: N. Fearnley
Author: M.J. Pond
Author: J.K. Dunbar
Author: P.D. Butcher
Author: T. Planche
Author: C.M. Lowndes
Author: S.T. Sadiq

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