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ALS-associated missense and nonsense TBK1 mutations can both cause loss of kinase function

ALS-associated missense and nonsense TBK1 mutations can both cause loss of kinase function
ALS-associated missense and nonsense TBK1 mutations can both cause loss of kinase function

Mutations in TANK binding kinase 1 (TBK1) have been linked to amyotrophic lateral sclerosis. Some TBK1 variants are nonsense and are predicted to cause disease through haploinsufficiency; however, many other mutations are missense with unknown functional effects. We exome sequenced 699 familial amyotrophic lateral sclerosis patients and identified 16 TBK1 novel or extremely rare protein-changing variants. We characterized a subset of these: p.G217R, p.R357X, and p.C471Y. Here, we show that the p.R357X and p.G217R both abolish the ability of TBK1 to phosphorylate 2 of its kinase targets, IRF3 and optineurin, and to undergo phosphorylation. They both inhibit binding to optineurin and the p.G217R, within the TBK1 kinase domain, reduces homodimerization, essential for TBK1 activation and function. Finally, we show that the proportion of TBK1 that is active (phosphorylated) is reduced in 5 lymphoblastoid cell lines derived from patients harboring heterozygous missense or in-frame deletion TBK1 mutations. We conclude that missense mutations in functional domains of TBK1 impair the binding and phosphorylation of its normal targets, implicating a common loss of function mechanism, analogous to truncation mutations.

ALS, Familial ALS, FTD, TBK1, WES
0197-4580
de Majo, Martina
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Topp, Simon D.
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Smith, Bradley N.
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Nishimura, Agnes L.
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Chen, Han Jou
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Gkazi, Athina Soragia
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Miller, Jack
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Wong, Chun Hao
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Vance, Caroline
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Baas, Frank
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ten Asbroek, Anneloor L.M.A.
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Kenna, Kevin P.
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Ticozzi, Nicola
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Redondo, Alberto Garcia
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Esteban-Pérez, Jesús
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Tiloca, Cinzia
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Verde, Federico
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Duga, Stefano
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Morrison, Karen E.
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Shaw, Pamela J.
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Kirby, Janine
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Turner, Martin R.
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Talbot, Kevin
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Hardiman, Orla
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Glass, Jonathan D.
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de Belleroche, Jacqueline
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Gellera, Cinzia
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Ratti, Antonia
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Al-Chalabi, Ammar
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Brown, Robert H.
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Silani, Vincenzo
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Landers, John E.
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Shaw, Christopher E.
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de Majo, Martina
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Topp, Simon D.
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Smith, Bradley N.
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Nishimura, Agnes L.
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Chen, Han Jou
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Gkazi, Athina Soragia
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Miller, Jack
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Wong, Chun Hao
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Vance, Caroline
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Baas, Frank
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ten Asbroek, Anneloor L.M.A.
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Kenna, Kevin P.
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Ticozzi, Nicola
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Redondo, Alberto Garcia
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Esteban-Pérez, Jesús
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Tiloca, Cinzia
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Verde, Federico
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Duga, Stefano
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Morrison, Karen E.
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Shaw, Pamela J.
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Kirby, Janine
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Turner, Martin R.
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Talbot, Kevin
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Hardiman, Orla
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Glass, Jonathan D.
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de Belleroche, Jacqueline
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Gellera, Cinzia
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Ratti, Antonia
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Al-Chalabi, Ammar
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Brown, Robert H.
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Silani, Vincenzo
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Landers, John E.
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Shaw, Christopher E.
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de Majo, Martina, Topp, Simon D., Smith, Bradley N., Nishimura, Agnes L., Chen, Han Jou, Gkazi, Athina Soragia, Miller, Jack, Wong, Chun Hao, Vance, Caroline, Baas, Frank, ten Asbroek, Anneloor L.M.A., Kenna, Kevin P., Ticozzi, Nicola, Redondo, Alberto Garcia, Esteban-Pérez, Jesús, Tiloca, Cinzia, Verde, Federico, Duga, Stefano, Morrison, Karen E., Shaw, Pamela J., Kirby, Janine, Turner, Martin R., Talbot, Kevin, Hardiman, Orla, Glass, Jonathan D., de Belleroche, Jacqueline, Gellera, Cinzia, Ratti, Antonia, Al-Chalabi, Ammar, Brown, Robert H., Silani, Vincenzo, Landers, John E. and Shaw, Christopher E. (2018) ALS-associated missense and nonsense TBK1 mutations can both cause loss of kinase function. Neurobiology of Aging. (doi:10.1016/j.neurobiolaging.2018.06.015).

Record type: Article

Abstract

Mutations in TANK binding kinase 1 (TBK1) have been linked to amyotrophic lateral sclerosis. Some TBK1 variants are nonsense and are predicted to cause disease through haploinsufficiency; however, many other mutations are missense with unknown functional effects. We exome sequenced 699 familial amyotrophic lateral sclerosis patients and identified 16 TBK1 novel or extremely rare protein-changing variants. We characterized a subset of these: p.G217R, p.R357X, and p.C471Y. Here, we show that the p.R357X and p.G217R both abolish the ability of TBK1 to phosphorylate 2 of its kinase targets, IRF3 and optineurin, and to undergo phosphorylation. They both inhibit binding to optineurin and the p.G217R, within the TBK1 kinase domain, reduces homodimerization, essential for TBK1 activation and function. Finally, we show that the proportion of TBK1 that is active (phosphorylated) is reduced in 5 lymphoblastoid cell lines derived from patients harboring heterozygous missense or in-frame deletion TBK1 mutations. We conclude that missense mutations in functional domains of TBK1 impair the binding and phosphorylation of its normal targets, implicating a common loss of function mechanism, analogous to truncation mutations.

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Accepted/In Press date: 12 June 2018
e-pub ahead of print date: 25 June 2018
Keywords: ALS, Familial ALS, FTD, TBK1, WES

Identifiers

Local EPrints ID: 422663
URI: http://eprints.soton.ac.uk/id/eprint/422663
ISSN: 0197-4580
PURE UUID: a3a6a7d0-1041-4f2d-b368-4dc388a85796
ORCID for Karen E. Morrison: ORCID iD orcid.org/0000-0003-0216-5717

Catalogue record

Date deposited: 30 Jul 2018 16:30
Last modified: 05 Jun 2024 19:33

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Contributors

Author: Martina de Majo
Author: Simon D. Topp
Author: Bradley N. Smith
Author: Agnes L. Nishimura
Author: Han Jou Chen
Author: Athina Soragia Gkazi
Author: Jack Miller
Author: Chun Hao Wong
Author: Caroline Vance
Author: Frank Baas
Author: Anneloor L.M.A. ten Asbroek
Author: Kevin P. Kenna
Author: Nicola Ticozzi
Author: Alberto Garcia Redondo
Author: Jesús Esteban-Pérez
Author: Cinzia Tiloca
Author: Federico Verde
Author: Stefano Duga
Author: Karen E. Morrison ORCID iD
Author: Pamela J. Shaw
Author: Janine Kirby
Author: Martin R. Turner
Author: Kevin Talbot
Author: Orla Hardiman
Author: Jonathan D. Glass
Author: Jacqueline de Belleroche
Author: Cinzia Gellera
Author: Antonia Ratti
Author: Ammar Al-Chalabi
Author: Robert H. Brown
Author: Vincenzo Silani
Author: John E. Landers
Author: Christopher E. Shaw

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