READ ME File For 'Dataset for: A multi-image based approach for modelling plant-fertiliser interaction'

Dataset DOI: 10.5258/SOTON/D0353

ReadMe Author: Daniel M. McKay Fletcher, University of Southampton [dmmf1g15@soton.ac.uk]



This dataset supports the publication:

AUTHORS: Daniel M. McKay Fletcher, Samuel D. Keyes, Keith R. Daly, Arjen van Veelen, Tiina Roose

TITLE: A multi image-based approach for modelling plant-fertiliser interaction

JOURNAL: Rhizosphere

PAPER DOI: https://doi.org/10.?1016/?j.?rhisph.?2019.?100152


This data set contains:

The raw XCT and SEM-EDS data used in the publication

./PLCG_1_EDS.zip/ - SEM-EDS Data from the PLCG_1 treatment. Processing as described in the article produces red dots Fig 7. 
		Pixel side length is is 0.0096 mm unless the title says *scaled*

./PL_1_EDS.zip/ - SEM-EDS Data from the PLCG_1 treatment. Pixel side length is 0.0096 mm unless the title says *scaled*.

./CG_1_EDS.zip/ - SEM-EDS Data from the CG_1 treatment. Processing as described in the article produces blue dots Fig 6.
		 Pixel side length is 0.0096 mm unless the title says *scaled*.

./Control_EDS.zip/ - SEM-EDS Data from the Control treatment. Pixel side length is 0.0096 mm unless the title says *scaled*.

./PLCG_1_REOR_CROPPED.zip - Reoriented raw xct stack of the PLCG treatment. It is reoriented so it is normal to the thin-section using the method described in the manuscript
			It has been cropped to what was used in the image-based model. Segmentation and meshing as described in the manuscript will produce a mesh suitable 
			to solve the image-based model on. After imgae-based modelling this data produces the red lines in Figure 7, red dots in Fig 8. Voxel side length is 0.02mm

./PL_1_REOR_CROPPED.zip/ - Reoriented raw xct stack of the PL treatment. It is reoriented so it is normal to the thin-section using the method described in the manuscript
			It has been cropped to what was used in the image-based model. Segmentation and meshing as described in the manuscript will produce a mesh suitable 
			to solve the image-based model on. After imgae-based modelling this data produces  the blue crosses in Fig 8. Voxel side length is 0.02mm

./CG_1_REOR_CROPPED.zip/ - Reoriented raw xct stack of the CG treatment. It is reoriented so it is normal to the thin-section using the method described in the manuscript
			It has been cropped to what was used in the image-based model. Segmentation and meshing as described in the manuscript will produce a mesh suitable 
			to solve the image-based model on. After imgae-based modelling this is used for solving Eq 6. Voxel side length is 0.02mm

./PL_2_RLD.zip/ - 2nd PL treatment used to measure RLD changes. after segmentation as described in the manuscript will produce the blue dots in Fig 3. Voxel side length is 0.02mm

/PLCG_2_RLD/ - 2nd PLCG treatment to measure RLD changes with distance from the fertiliser. after segmentation as described in the manuscript will produce the red dots in Fig 3. 
		Voxel side length is 0.016mm.


Date of data collection: 2016 to 2017, in the University of Southampton, U.K.

Date that the README was created: May, 2019