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Networks of HIV-1 envelope glycans maintain antibody epitopes in the face of glycan additions and deletions

Networks of HIV-1 envelope glycans maintain antibody epitopes in the face of glycan additions and deletions
Networks of HIV-1 envelope glycans maintain antibody epitopes in the face of glycan additions and deletions

Numerous broadly neutralizing antibodies (bnAbs) have been identified that target the glycans of the HIV-1 envelope spike. Neutralization breadth is notable given that glycan processing can be substantially influenced by the presence or absence of neighboring glycans. Here, using a stabilized recombinant envelope trimer, we investigate the degree to which mutations in the glycan network surrounding an epitope impact the fine glycan processing of antibody targets. Using cryo-electron microscopy and site-specific glycan analysis, we reveal the importance of glycans in the formation of the 2G12 bnAb epitope and show that the epitope is only subtly impacted by variations in the glycan network. In contrast, we show that the PG9 and PG16 glycan-based epitopes at the trimer apex are dependent on the presence of the highly conserved surrounding glycans. Glycan networks underpin the conservation of bnAb epitopes and are an important parameter in immunogen design.

broadly neutralizing antibodies, cryo-electron microscopy, glycans, glycosylation, human immunodeficiency virus, mass spectrometry, structure, vaccines
0969-2126
897-909.e6
Seabright, Gemma E.
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Cottrell, Christopher A.
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van Gils, Marit J.
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D'addabbo, Alessio
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Harvey, David J.
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Behrens, Anna-Janina
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Allen, Joel D.
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Watanabe, Yasunori
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Scaringi, Nicole
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Polveroni, Thomas M.
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Maker, Allison
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Vasiljevic, Snezana
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de Val, Natalia
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Sanders, Rogier W.
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Ward, Andrew B.
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Crispin, Max
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Seabright, Gemma E.
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Cottrell, Christopher A.
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van Gils, Marit J.
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D'addabbo, Alessio
ae2358c9-d733-4c7f-aaf3-b8b52b7cb810
Harvey, David J.
8bb24417-3852-4b1f-827b-0d5d2c176744
Behrens, Anna-Janina
ed584c40-79cb-4de9-bb9c-bd68c71d6a68
Allen, Joel D.
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Watanabe, Yasunori
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Scaringi, Nicole
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Polveroni, Thomas M.
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Maker, Allison
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Vasiljevic, Snezana
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de Val, Natalia
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Sanders, Rogier W.
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Ward, Andrew B.
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Crispin, Max
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Seabright, Gemma E., Cottrell, Christopher A., van Gils, Marit J., D'addabbo, Alessio, Harvey, David J., Behrens, Anna-Janina, Allen, Joel D., Watanabe, Yasunori, Scaringi, Nicole, Polveroni, Thomas M., Maker, Allison, Vasiljevic, Snezana, de Val, Natalia, Sanders, Rogier W., Ward, Andrew B. and Crispin, Max (2020) Networks of HIV-1 envelope glycans maintain antibody epitopes in the face of glycan additions and deletions. Structure, 28 (8), 897-909.e6. (doi:10.1016/j.str.2020.04.022).

Record type: Article

Abstract

Numerous broadly neutralizing antibodies (bnAbs) have been identified that target the glycans of the HIV-1 envelope spike. Neutralization breadth is notable given that glycan processing can be substantially influenced by the presence or absence of neighboring glycans. Here, using a stabilized recombinant envelope trimer, we investigate the degree to which mutations in the glycan network surrounding an epitope impact the fine glycan processing of antibody targets. Using cryo-electron microscopy and site-specific glycan analysis, we reveal the importance of glycans in the formation of the 2G12 bnAb epitope and show that the epitope is only subtly impacted by variations in the glycan network. In contrast, we show that the PG9 and PG16 glycan-based epitopes at the trimer apex are dependent on the presence of the highly conserved surrounding glycans. Glycan networks underpin the conservation of bnAb epitopes and are an important parameter in immunogen design.

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Accepted/In Press date: 28 April 2020
e-pub ahead of print date: 19 May 2020
Published date: 4 August 2020
Keywords: broadly neutralizing antibodies, cryo-electron microscopy, glycans, glycosylation, human immunodeficiency virus, mass spectrometry, structure, vaccines

Identifiers

Local EPrints ID: 441327
URI: http://eprints.soton.ac.uk/id/eprint/441327
ISSN: 0969-2126
PURE UUID: 7b7b1885-e700-4581-81d4-b8f448ae448d
ORCID for Alessio D'addabbo: ORCID iD orcid.org/0000-0003-2542-6465
ORCID for Joel D. Allen: ORCID iD orcid.org/0000-0003-2547-968X
ORCID for Max Crispin: ORCID iD orcid.org/0000-0002-1072-2694

Catalogue record

Date deposited: 09 Jun 2020 16:31
Last modified: 17 Mar 2024 04:09

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Contributors

Author: Gemma E. Seabright
Author: Christopher A. Cottrell
Author: Marit J. van Gils
Author: David J. Harvey
Author: Anna-Janina Behrens
Author: Joel D. Allen ORCID iD
Author: Yasunori Watanabe
Author: Nicole Scaringi
Author: Thomas M. Polveroni
Author: Allison Maker
Author: Snezana Vasiljevic
Author: Natalia de Val
Author: Rogier W. Sanders
Author: Andrew B. Ward
Author: Max Crispin ORCID iD

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