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HLA tapasin independence: broader peptide repertoire and HIV control

HLA tapasin independence: broader peptide repertoire and HIV control
HLA tapasin independence: broader peptide repertoire and HIV control

Human leukocyte antigen (HLA) class I allotypes vary in thei ability to present peptides in the absence of tapasin, an essentia component of the peptide loading complex. We quantified tapasi dependence of all allotypes that are common in European an African Americans (n = 97), which revealed a broad continuum o values. Ex vivo examination of cytotoxic T cell responses to th entire HIV-1 proteome from infected subjects indicates tha tapasin-dependent allotypes present a more limited set of distinc peptides than do tapasin-independent allotypes, data supporte by computational predictions. This suggests that variation in tapa sin dependence may impact the strength of the immune response by altering peptide repertoire size. In support of this model, w observed that individuals carrying HLA class I genotypes charac terized by greater tapasin independence progress more slowly t AIDS and maintain lower viral loads, presumably due to increase breadth of peptide presentation. Thus, tapasin dependence level like HLA zygosity, may serve as a means to restrict or expan breadth of the HLA-I peptide repertoire across humans, ultimatel influencing immune responses to pathogens and vaccines.

HLA, peptide repertoire, tapasin
0027-8424
28232-28238
Bashirova, Arman A
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Viard, Mathias
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Naranbhai, Vivek
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Grifoni, Alba
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Garcia-Beltran, Wilfredo
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Akdag, Marjan
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Yuki, Yuko
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Gao, Xiaojiang
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O'hUigin, Colm
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Raghavan, Malini
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Wolinsky, Steven
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Bream, Jay H.
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Duggal, Priya
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Martinson, Jeremy
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Michael, Nelson L.
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Kirk, Gregory D.
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Buchbinder, Susan P.
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Haas, David
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Goedert, James J.
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Deeks, Steven G.
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Fellay, Jacques
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Walker, Bruce
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Goulder, Philip
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Cresswell, Peter
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Elliott, Tim
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Sette, Alessandro
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Carlson, Jonathan
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Carrington, Mary
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Bashirova, Arman A
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Viard, Mathias
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Naranbhai, Vivek
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Grifoni, Alba
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Garcia-Beltran, Wilfredo
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Akdag, Marjan
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Yuki, Yuko
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Gao, Xiaojiang
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O'hUigin, Colm
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Raghavan, Malini
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Wolinsky, Steven
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Bream, Jay H.
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Duggal, Priya
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Martinson, Jeremy
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Michael, Nelson L.
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Kirk, Gregory D.
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Buchbinder, Susan P.
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Haas, David
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Goedert, James J.
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Deeks, Steven G.
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Fellay, Jacques
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Walker, Bruce
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Goulder, Philip
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Cresswell, Peter
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Elliott, Tim
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Sette, Alessandro
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Carlson, Jonathan
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Carrington, Mary
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Bashirova, Arman A, Viard, Mathias, Naranbhai, Vivek, Grifoni, Alba, Garcia-Beltran, Wilfredo, Akdag, Marjan, Yuki, Yuko, Gao, Xiaojiang, O'hUigin, Colm, Raghavan, Malini, Wolinsky, Steven, Bream, Jay H., Duggal, Priya, Martinson, Jeremy, Michael, Nelson L., Kirk, Gregory D., Buchbinder, Susan P., Haas, David, Goedert, James J., Deeks, Steven G., Fellay, Jacques, Walker, Bruce, Goulder, Philip, Cresswell, Peter, Elliott, Tim, Sette, Alessandro, Carlson, Jonathan and Carrington, Mary (2020) HLA tapasin independence: broader peptide repertoire and HIV control. Proceedings of the National Academy of Sciences of the United States of America, 117 (45), 28232-28238. (doi:10.1073/pnas.2013554117).

Record type: Article

Abstract

Human leukocyte antigen (HLA) class I allotypes vary in thei ability to present peptides in the absence of tapasin, an essentia component of the peptide loading complex. We quantified tapasi dependence of all allotypes that are common in European an African Americans (n = 97), which revealed a broad continuum o values. Ex vivo examination of cytotoxic T cell responses to th entire HIV-1 proteome from infected subjects indicates tha tapasin-dependent allotypes present a more limited set of distinc peptides than do tapasin-independent allotypes, data supporte by computational predictions. This suggests that variation in tapa sin dependence may impact the strength of the immune response by altering peptide repertoire size. In support of this model, w observed that individuals carrying HLA class I genotypes charac terized by greater tapasin independence progress more slowly t AIDS and maintain lower viral loads, presumably due to increase breadth of peptide presentation. Thus, tapasin dependence level like HLA zygosity, may serve as a means to restrict or expan breadth of the HLA-I peptide repertoire across humans, ultimatel influencing immune responses to pathogens and vaccines.

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Accepted/In Press date: 8 September 2020
e-pub ahead of print date: 23 October 2020
Published date: 10 November 2020
Additional Information: Funding Information: ACKNOWLEDGMENTS. We thank Drs. George Nelson and Maureen P. Martin for helpful discussions. We also thank the volunteers in the contributing cohorts, their health care providers, and the investigators involved in data collection. This project has been funded in whole or in part with federal funds from the Frederick National Laboratory for Cancer Research, under Contract HHSN261200800001E. The content of this publication does not necessarily reflect the views or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organizations imply endorsement by the US Government. This research was supported in part by the Intramural Research Program of the National Institutes of Health (NIH), Frederick National Laboratory, Center for Cancer Research. A.S. was supported by NIH Grants HHSN272201400045C and 75N93019C00001. M.R. was supported by National Institute of Allergy and Infectious Diseases/NIH Grant R01AI044115. See the extended acknowledgments in SI Appendix for full details. Publisher Copyright: © 2020 National Academy of Sciences. All rights reserved.
Keywords: HLA, peptide repertoire, tapasin

Identifiers

Local EPrints ID: 444750
URI: http://eprints.soton.ac.uk/id/eprint/444750
ISSN: 0027-8424
PURE UUID: 75d5c8e8-b702-4324-bd8e-4b929670742b
ORCID for Tim Elliott: ORCID iD orcid.org/0000-0003-1097-0222

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Date deposited: 03 Nov 2020 17:31
Last modified: 17 Mar 2024 02:52

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Contributors

Author: Arman A Bashirova
Author: Mathias Viard
Author: Vivek Naranbhai
Author: Alba Grifoni
Author: Wilfredo Garcia-Beltran
Author: Marjan Akdag
Author: Yuko Yuki
Author: Xiaojiang Gao
Author: Colm O'hUigin
Author: Malini Raghavan
Author: Steven Wolinsky
Author: Jay H. Bream
Author: Priya Duggal
Author: Jeremy Martinson
Author: Nelson L. Michael
Author: Gregory D. Kirk
Author: Susan P. Buchbinder
Author: David Haas
Author: James J. Goedert
Author: Steven G. Deeks
Author: Jacques Fellay
Author: Bruce Walker
Author: Philip Goulder
Author: Peter Cresswell
Author: Tim Elliott ORCID iD
Author: Alessandro Sette
Author: Jonathan Carlson
Author: Mary Carrington

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