The University of Southampton
University of Southampton Institutional Repository

Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries

Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries
Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries

Primary open-angle glaucoma (POAG), is a heritable common cause of blindness world-wide. To identify risk loci, we conduct a large multi-ethnic meta-analysis of genome-wide association studies on a total of 34,179 cases and 349,321 controls, identifying 44 previously unreported risk loci and confirming 83 loci that were previously known. The majority of loci have broadly consistent effects across European, Asian and African ancestries. Cross-ancestry data improve fine-mapping of causal variants for several loci. Integration of multiple lines of genetic evidence support the functional relevance of the identified POAG risk loci and highlight potential contributions of several genes to POAG pathogenesis, including SVEP1, RERE, VCAM1, ZNF638, CLIC5, SLC2A12, YAP1, MXRA5, and SMAD6. Several drug compounds targeting POAG risk genes may be potential glaucoma therapeutic candidates.

2041-1723
Gharahkhani, Puya
92bfede3-a0fa-47cf-85f2-451499a6a746
Jorgenson, Eric
01da01fe-ae7e-4505-9ff8-dfdd5b19807b
Hysi, Pirro
dd5e8a62-9503-4738-a51a-a053d4071095
Khawaja, Anthony P.
ac15cbf1-b21c-4760-80d9-d8ff7ce51e03
Pendergrass, Sarah
55798c67-ad64-4e5a-8f17-4e88f6c41d88
Han, Xikun
fc4c3b7e-bf6d-4c6f-b178-def18c321ad6
Ong, Jue Sheng
13b0b72c-19f3-409e-9133-9de478ac85c4
Hewitt, Alex W.
9dffa147-6f00-40df-9f18-95f8552aa140
Segrè, Ayellet V.
454bc7c3-f86a-485f-bdf9-289067ca9da2
Rouhana, John M.
c23debb5-9a47-42be-aa86-01ad3274c4b5
Hamel, Andrew R.
a1ea2994-ed20-40af-8c04-8a369d63969c
Igo, Robert P.
8dfac1d9-ecf9-4b8c-a5e5-ede5f5ace091
Choquet, Helene
c468bf57-0c24-4694-a163-ce61c00259bb
Qassim, Ayub
3a3f5773-01ba-4fe5-addc-ece7b2058330
Josyula, Navya S.
5b6a0ef9-cc24-4c67-ac14-3130a6ab4371
Cooke Bailey, Jessica N.
192ad3eb-5f5e-4817-a50d-9ca4ce9720c1
Bonnemaijer, Pieter W.M.
6e9e6c9a-cb01-48c2-859e-425c528c51c9
Iglesias, Adriana
fb3826f8-82f4-4836-97b5-42da16d3e140
Siggs, Owen M.
f938ea0f-d79c-4e4d-b8c3-610a6f46bc9d
Young, Terri L.
f403f56d-5f13-4f67-a4b7-d5b1614b28e9
Vitart, Veronique
1794d62f-7c77-4d28-968f-08226c9db492
Thiadens, Alberta A.H.J.
d614e63a-b794-49dd-a6a4-2def3b256c7e
Karjalainen, Juha
ade667f8-1ce0-432e-bcb2-09c367d54053
Uebe, Steffen
1fc57944-f51f-47d6-abdf-8dba58f4b159
Melles, Ronald B.
a80bead4-eda3-46fc-9e08-acba8727da76
Nair, K. Saidas
6bde1ad9-066d-4aa9-938b-2012ac89376b
Luben, Robert
45fbac1d-ed4b-4a64-8f44-9b1afc94df6d
Simcoe, Mark
1cb62016-93df-4af6-bf28-5f2dce59313b
Amersinghe, Nishani
5baa0c63-8019-402c-92b3-d40d4281f98b
Cree, Angela J.
6724b71b-8828-4abb-971f-0856c2af555e
Hohn, Rene
1d00b51a-f4ae-46ed-b7bd-a42d97a3955e
Poplawski, Alicia
7e00d94a-f916-4943-a980-060ce909e15a
Chen, Li Jia
2bdb1122-9bc3-4d16-b7dd-d455bcfb4632
Rong, Shi Song
99c26f00-7a60-407d-8363-918d93b93e84
Aung, Tin
cff9d363-6d69-40af-a589-4278d9d67b5e
Martin, Sarah
bfa9fb80-1f31-4bde-96d5-9ab711cc22d1
White, Andrew J.
cadc0869-9eb7-4d9f-9fec-f2a340418ed6
Carare, Roxana
0478c197-b0c1-4206-acae-54e88c8f21fa
Ennis, Sarah
7b57f188-9d91-4beb-b217-09856146f1e9
Foster, Paul
b1c5c359-c987-4d15-8daa-044fe7326978
Gibson, Jane
855033a6-38f3-4853-8f60-d7d4561226ae
Lotery, Andrew J.
5ecc2d2d-d0b4-468f-ad2c-df7156f8e514
Morgan, James E.
391ed7a6-fadb-4127-86e6-404f80596b08
Self, Jay
0f6efc58-ae24-4667-b8d6-6fafa849e389
Stratton, Irene
772f25b9-23c0-4240-a3f6-1e76b03b172f
Wang, Xin
c90586d9-fe95-4a81-b651-6217f776f957
Martin, Nicholas G.
c541a23d-0d62-4963-8355-b06ccc947c3f
Morgan, James E.
391ed7a6-fadb-4127-86e6-404f80596b08
Lotery, Andrew J.
5ecc2d2d-d0b4-468f-ad2c-df7156f8e514
Cheng, Ching Yu
62f904b4-0308-4a91-8412-17ce69771f06
NEIGHBORHOOD Consortium
ANZRAG consortium
Biobank Japan project
FinnGen study
UK Biobank Eye and Vision Consortium
GIGA study group
23 and Me Research Team
Gharahkhani, Puya
92bfede3-a0fa-47cf-85f2-451499a6a746
Jorgenson, Eric
01da01fe-ae7e-4505-9ff8-dfdd5b19807b
Hysi, Pirro
dd5e8a62-9503-4738-a51a-a053d4071095
Khawaja, Anthony P.
ac15cbf1-b21c-4760-80d9-d8ff7ce51e03
Pendergrass, Sarah
55798c67-ad64-4e5a-8f17-4e88f6c41d88
Han, Xikun
fc4c3b7e-bf6d-4c6f-b178-def18c321ad6
Ong, Jue Sheng
13b0b72c-19f3-409e-9133-9de478ac85c4
Hewitt, Alex W.
9dffa147-6f00-40df-9f18-95f8552aa140
Segrè, Ayellet V.
454bc7c3-f86a-485f-bdf9-289067ca9da2
Rouhana, John M.
c23debb5-9a47-42be-aa86-01ad3274c4b5
Hamel, Andrew R.
a1ea2994-ed20-40af-8c04-8a369d63969c
Igo, Robert P.
8dfac1d9-ecf9-4b8c-a5e5-ede5f5ace091
Choquet, Helene
c468bf57-0c24-4694-a163-ce61c00259bb
Qassim, Ayub
3a3f5773-01ba-4fe5-addc-ece7b2058330
Josyula, Navya S.
5b6a0ef9-cc24-4c67-ac14-3130a6ab4371
Cooke Bailey, Jessica N.
192ad3eb-5f5e-4817-a50d-9ca4ce9720c1
Bonnemaijer, Pieter W.M.
6e9e6c9a-cb01-48c2-859e-425c528c51c9
Iglesias, Adriana
fb3826f8-82f4-4836-97b5-42da16d3e140
Siggs, Owen M.
f938ea0f-d79c-4e4d-b8c3-610a6f46bc9d
Young, Terri L.
f403f56d-5f13-4f67-a4b7-d5b1614b28e9
Vitart, Veronique
1794d62f-7c77-4d28-968f-08226c9db492
Thiadens, Alberta A.H.J.
d614e63a-b794-49dd-a6a4-2def3b256c7e
Karjalainen, Juha
ade667f8-1ce0-432e-bcb2-09c367d54053
Uebe, Steffen
1fc57944-f51f-47d6-abdf-8dba58f4b159
Melles, Ronald B.
a80bead4-eda3-46fc-9e08-acba8727da76
Nair, K. Saidas
6bde1ad9-066d-4aa9-938b-2012ac89376b
Luben, Robert
45fbac1d-ed4b-4a64-8f44-9b1afc94df6d
Simcoe, Mark
1cb62016-93df-4af6-bf28-5f2dce59313b
Amersinghe, Nishani
5baa0c63-8019-402c-92b3-d40d4281f98b
Cree, Angela J.
6724b71b-8828-4abb-971f-0856c2af555e
Hohn, Rene
1d00b51a-f4ae-46ed-b7bd-a42d97a3955e
Poplawski, Alicia
7e00d94a-f916-4943-a980-060ce909e15a
Chen, Li Jia
2bdb1122-9bc3-4d16-b7dd-d455bcfb4632
Rong, Shi Song
99c26f00-7a60-407d-8363-918d93b93e84
Aung, Tin
cff9d363-6d69-40af-a589-4278d9d67b5e
Martin, Sarah
bfa9fb80-1f31-4bde-96d5-9ab711cc22d1
White, Andrew J.
cadc0869-9eb7-4d9f-9fec-f2a340418ed6
Carare, Roxana
0478c197-b0c1-4206-acae-54e88c8f21fa
Ennis, Sarah
7b57f188-9d91-4beb-b217-09856146f1e9
Foster, Paul
b1c5c359-c987-4d15-8daa-044fe7326978
Gibson, Jane
855033a6-38f3-4853-8f60-d7d4561226ae
Lotery, Andrew J.
5ecc2d2d-d0b4-468f-ad2c-df7156f8e514
Morgan, James E.
391ed7a6-fadb-4127-86e6-404f80596b08
Self, Jay
0f6efc58-ae24-4667-b8d6-6fafa849e389
Stratton, Irene
772f25b9-23c0-4240-a3f6-1e76b03b172f
Wang, Xin
c90586d9-fe95-4a81-b651-6217f776f957
Martin, Nicholas G.
c541a23d-0d62-4963-8355-b06ccc947c3f
Morgan, James E.
391ed7a6-fadb-4127-86e6-404f80596b08
Lotery, Andrew J.
5ecc2d2d-d0b4-468f-ad2c-df7156f8e514
Cheng, Ching Yu
62f904b4-0308-4a91-8412-17ce69771f06

NEIGHBORHOOD Consortium, ANZRAG consortium, Biobank Japan project, FinnGen study, UK Biobank Eye and Vision Consortium, GIGA study group and 23 and Me Research Team (2021) Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries. Nature Communications, 12 (1), [1258]. (doi:10.1038/s41467-020-20851-4).

Record type: Article

Abstract

Primary open-angle glaucoma (POAG), is a heritable common cause of blindness world-wide. To identify risk loci, we conduct a large multi-ethnic meta-analysis of genome-wide association studies on a total of 34,179 cases and 349,321 controls, identifying 44 previously unreported risk loci and confirming 83 loci that were previously known. The majority of loci have broadly consistent effects across European, Asian and African ancestries. Cross-ancestry data improve fine-mapping of causal variants for several loci. Integration of multiple lines of genetic evidence support the functional relevance of the identified POAG risk loci and highlight potential contributions of several genes to POAG pathogenesis, including SVEP1, RERE, VCAM1, ZNF638, CLIC5, SLC2A12, YAP1, MXRA5, and SMAD6. Several drug compounds targeting POAG risk genes may be potential glaucoma therapeutic candidates.

This record has no associated files available for download.

More information

Accepted/In Press date: 8 December 2020
e-pub ahead of print date: 24 February 2021
Published date: 24 February 2021
Additional Information: Funding Information: This work was conducted using the UK Biobank Resource (application number 25331) and publicly available data from the International Glaucoma Genetics Consortium. This work was also supported by grants from the National Health and Medical Research Council (NHMRC) of Australia (#1107098; 1116360, 1116495, 1023911), the Ophthalmic Research Institute of Australia, the BrightFocus Foundation, UK and Eire Glaucoma Society and Charitable Funds from Royal Liverpool University Hospital, and International Glaucoma Association-Royal College of Ophthalmologists. P.G. is supported by a NHMRC Investigator Grant (#1173390). S.M., J.E.C., K.P.B., and A.W.H. are supported by NHMRC Fellowships. A.P.K. was funded by a Moorfields Eye Charity Career Development Fellowship, a UK Research and Innovation Future Leaders Fellowship and an Alcon Research Institute Young Investigator Award. The EPIC-Norfolk study has received funding from the Medical Research Council (MR/N003284/1, MC-UU_12015/1, and MC_PC_13048) and Cancer Research UK (C864/A14136). The NEIGHBORHOOD consortium is supported by NIH grants P30 EY014104, R01 EY015473, and R01 EY022305. The FinnGen project is funded by two grants from Business Finland (HUS 4685/31/2016 and UH 4386/ 31/2016) and eleven industry partners (AbbVie Inc, AstraZeneca UK Ltd, Biogen MA Inc, Celgene Corporation, Celgene International II Sàrl, Genentech Inc, Merck Sharp & Dohme Corp, Pfizer Inc., GlaxoSmithKline, Sanofi, Maze Therapeutics Inc., Janssen Biotech Inc). This work was also supported by the National Eye Institute/National Institutes of Health [R01EY018246, and support from the National Institutes of Health Center for Inherited Disease Research to T.L.Y.]; a University of Wisconsin Centennial Scholars Award [to T.L.Y.]; and an unrestricted grant from Research to Prevent Blindness, Inc. to the UW-Madison Department of Ophthalmology and Visual Sciences [to T.L.Y.]. Additional acknowledgments are supplied in the Supplementary Information file. Funding Information: X.W. and A.A. are employed by and hold stock or stock options in 23andMe, Inc. J.W. is a consultant for Allergan, Editas, Maze, Regenxbio and has received sponsored research support from Aerpio Pharmaceuticals Inc. L.P. is a consultant for Eyenovia, Bausch + Lomb, Verily, and Nicox. T.L.Y. serves as a consultant to Aerpio Pharmaceuticals, Inc. A.P.K. is a consultant to Aerie, Allergan, Google Health, Novartis, Reichert, Santen and Thea. All remaining authors declare no competing interests. Publisher Copyright: © 2021, The Author(s). Copyright: Copyright 2021 Elsevier B.V., All rights reserved.

Identifiers

Local EPrints ID: 448453
URI: http://eprints.soton.ac.uk/id/eprint/448453
ISSN: 2041-1723
PURE UUID: 1dd8188f-95c9-401a-a78f-b58cbe787fa8
ORCID for Angela J. Cree: ORCID iD orcid.org/0000-0002-1987-8900
ORCID for Roxana Carare: ORCID iD orcid.org/0000-0001-6458-3776
ORCID for Sarah Ennis: ORCID iD orcid.org/0000-0003-2648-0869
ORCID for Jane Gibson: ORCID iD orcid.org/0000-0002-0973-8285
ORCID for Andrew J. Lotery: ORCID iD orcid.org/0000-0001-5541-4305
ORCID for Jay Self: ORCID iD orcid.org/0000-0002-1030-9963
ORCID for Irene Stratton: ORCID iD orcid.org/0000-0003-1172-7865
ORCID for Andrew J. Lotery: ORCID iD orcid.org/0000-0001-5541-4305

Catalogue record

Date deposited: 22 Apr 2021 16:46
Last modified: 15 Oct 2024 02:01

Export record

Altmetrics

Contributors

Author: Puya Gharahkhani
Author: Eric Jorgenson
Author: Pirro Hysi
Author: Anthony P. Khawaja
Author: Sarah Pendergrass
Author: Xikun Han
Author: Jue Sheng Ong
Author: Alex W. Hewitt
Author: Ayellet V. Segrè
Author: John M. Rouhana
Author: Andrew R. Hamel
Author: Robert P. Igo
Author: Helene Choquet
Author: Ayub Qassim
Author: Navya S. Josyula
Author: Jessica N. Cooke Bailey
Author: Pieter W.M. Bonnemaijer
Author: Adriana Iglesias
Author: Owen M. Siggs
Author: Terri L. Young
Author: Veronique Vitart
Author: Alberta A.H.J. Thiadens
Author: Juha Karjalainen
Author: Steffen Uebe
Author: Ronald B. Melles
Author: K. Saidas Nair
Author: Robert Luben
Author: Mark Simcoe
Author: Nishani Amersinghe
Author: Angela J. Cree ORCID iD
Author: Rene Hohn
Author: Alicia Poplawski
Author: Li Jia Chen
Author: Shi Song Rong
Author: Tin Aung
Author: Sarah Martin
Author: Andrew J. White
Author: Roxana Carare ORCID iD
Author: Sarah Ennis ORCID iD
Author: Paul Foster
Author: Jane Gibson ORCID iD
Author: James E. Morgan
Author: Jay Self ORCID iD
Author: Irene Stratton ORCID iD
Author: Xin Wang
Author: Nicholas G. Martin
Author: James E. Morgan
Author: Ching Yu Cheng
Corporate Author: NEIGHBORHOOD Consortium
Corporate Author: ANZRAG consortium
Corporate Author: Biobank Japan project
Corporate Author: FinnGen study
Corporate Author: UK Biobank Eye and Vision Consortium
Corporate Author: GIGA study group
Corporate Author: 23 and Me Research Team

Download statistics

Downloads from ePrints over the past year. Other digital versions may also be available to download e.g. from the publisher's website.

View more statistics

Atom RSS 1.0 RSS 2.0

Contact ePrints Soton: eprints@soton.ac.uk

ePrints Soton supports OAI 2.0 with a base URL of http://eprints.soton.ac.uk/cgi/oai2

This repository has been built using EPrints software, developed at the University of Southampton, but available to everyone to use.

We use cookies to ensure that we give you the best experience on our website. If you continue without changing your settings, we will assume that you are happy to receive cookies on the University of Southampton website.

×