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Dissection of contiguous gene effects for deletions around ERF on chromosome 19

Dissection of contiguous gene effects for deletions around ERF on chromosome 19
Dissection of contiguous gene effects for deletions around ERF on chromosome 19

Heterozygous intragenic loss-of-function mutations of ERF, encoding an ETS transcription factor, were previously reported to cause a novel craniosynostosis syndrome, suggesting that ERF is haploinsufficient. We describe six families harboring heterozygous deletions including, or near to, ERF, of which four were characterized by whole-genome sequencing and two by chromosomal microarray. Based on the severity of associated intellectual disability (ID), we identify three categories of ERF-associated deletions. The smallest (32 kb) and only inherited deletion included two additional centromeric genes and was not associated with ID. Three larger deletions (264–314 kb) that included at least five further centromeric genes were associated with moderate ID, suggesting that deletion of one or more of these five genes causes ID. The individual with the most severe ID had a more telomerically extending deletion, including CIC, a known ID gene. Children found to harbor ERF deletions should be referred for craniofacial assessment, to exclude occult raised intracranial pressure.

CNV, craniosynostosis, ERF, haploinsufficiency, intellectual disability, mosaicism
1059-7794
811-817
Calpena, Eduardo
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McGowan, Simon J.
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Blanco Kelly, Fiona
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Boudry-Labis, Elise
b5b46df1-6ea0-4fc3-a587-23ae631b59c7
Dieux-Coeslier, Anne
ad235ade-df2f-40c1-832b-2e5b881f422a
Harrison, Rachel
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Johnson, Diana
5144874c-5607-4f68-814a-eabe50a75bd4
Lachlan, Katherine
175ce889-ede8-477e-93eb-afefc1af5dda
Morton, Jenny E.V.
4404222b-195a-4d27-baec-3248e153e054
Stewart, Helen
f0a57ec9-3e87-4331-bf44-e00f32c432dd
Vasudevan, Pradeep
a705806a-093a-49a8-a588-f4ff113c7969
Twigg, Stephen R.F.
894d2681-a4c2-4571-825b-72577969617b
Wilkie, Andrew O.M.
7064a09e-66d9-4acf-92eb-cffad1ce3762
Genomics England Research Consortium
Calpena, Eduardo
bad80457-ecc0-481a-8f9b-3cebc677d722
McGowan, Simon J.
ff555052-1855-46ee-abc5-6d0783d6b77a
Blanco Kelly, Fiona
14335c4b-2e4a-4d53-8f58-798d8a2eaefd
Boudry-Labis, Elise
b5b46df1-6ea0-4fc3-a587-23ae631b59c7
Dieux-Coeslier, Anne
ad235ade-df2f-40c1-832b-2e5b881f422a
Harrison, Rachel
d0b796e4-413f-4de3-b5f1-dce08836dd4b
Johnson, Diana
5144874c-5607-4f68-814a-eabe50a75bd4
Lachlan, Katherine
175ce889-ede8-477e-93eb-afefc1af5dda
Morton, Jenny E.V.
4404222b-195a-4d27-baec-3248e153e054
Stewart, Helen
f0a57ec9-3e87-4331-bf44-e00f32c432dd
Vasudevan, Pradeep
a705806a-093a-49a8-a588-f4ff113c7969
Twigg, Stephen R.F.
894d2681-a4c2-4571-825b-72577969617b
Wilkie, Andrew O.M.
7064a09e-66d9-4acf-92eb-cffad1ce3762

Calpena, Eduardo, McGowan, Simon J., Blanco Kelly, Fiona, Boudry-Labis, Elise, Dieux-Coeslier, Anne, Harrison, Rachel, Johnson, Diana, Lachlan, Katherine, Morton, Jenny E.V., Stewart, Helen, Vasudevan, Pradeep, Twigg, Stephen R.F. and Wilkie, Andrew O.M. , Genomics England Research Consortium (2021) Dissection of contiguous gene effects for deletions around ERF on chromosome 19. Human Mutation, 42 (7), 811-817. (doi:10.1002/humu.24213).

Record type: Article

Abstract

Heterozygous intragenic loss-of-function mutations of ERF, encoding an ETS transcription factor, were previously reported to cause a novel craniosynostosis syndrome, suggesting that ERF is haploinsufficient. We describe six families harboring heterozygous deletions including, or near to, ERF, of which four were characterized by whole-genome sequencing and two by chromosomal microarray. Based on the severity of associated intellectual disability (ID), we identify three categories of ERF-associated deletions. The smallest (32 kb) and only inherited deletion included two additional centromeric genes and was not associated with ID. Three larger deletions (264–314 kb) that included at least five further centromeric genes were associated with moderate ID, suggesting that deletion of one or more of these five genes causes ID. The individual with the most severe ID had a more telomerically extending deletion, including CIC, a known ID gene. Children found to harbor ERF deletions should be referred for craniofacial assessment, to exclude occult raised intracranial pressure.

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Accepted/In Press date: 16 May 2021
e-pub ahead of print date: 16 May 2021
Keywords: CNV, craniosynostosis, ERF, haploinsufficiency, intellectual disability, mosaicism

Identifiers

Local EPrints ID: 452162
URI: http://eprints.soton.ac.uk/id/eprint/452162
ISSN: 1059-7794
PURE UUID: 6765ed47-b818-43bc-a721-696d9adf49bc

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Date deposited: 26 Nov 2021 17:32
Last modified: 17 Mar 2024 12:48

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Contributors

Author: Eduardo Calpena
Author: Simon J. McGowan
Author: Fiona Blanco Kelly
Author: Elise Boudry-Labis
Author: Anne Dieux-Coeslier
Author: Rachel Harrison
Author: Diana Johnson
Author: Katherine Lachlan
Author: Jenny E.V. Morton
Author: Helen Stewart
Author: Pradeep Vasudevan
Author: Stephen R.F. Twigg
Author: Andrew O.M. Wilkie
Corporate Author: Genomics England Research Consortium

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