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Analysis of the gene expression profile of Schistosoma mansoni cercariae using the expressed sequence tag approach

Analysis of the gene expression profile of Schistosoma mansoni cercariae using the expressed sequence tag approach
Analysis of the gene expression profile of Schistosoma mansoni cercariae using the expressed sequence tag approach
ESTs constitute rapid and informative tools with which to study gene-expression profiles of the diverse stages of the schistosome life cycle. Following a comprehensive EST study of adult worms, analysis has now targeted the cercaria, the parasite larval form responsible for infection of the vertebrate host. Two Schistosoma mansoni cercarial cDNA libraries were examined and partial sequence obtained from 957 randomly selected clones. On the basis of database searches, 551 (57.6%) ESTs generated had no homologs in the public databases whilst 308 (32.2%) were putatively identified, totaling 859 informative ESTs. The remaining 98 (10.2%) were uninformative ESTs (ribosomal RNA and non-coding mitochondrial sequences). By clustering analysis we have identified 453 different genes. The most common sequences in both libraries represented Sm8 calcium binding protein (8% of ESTs), fructose-1,6-bisphosphate aldolase, glyceraldehyde-3-phosphate dehydrogenase, cytochrome oxidase subunit 1, ATP guanidine kinase and triose phosphate isomerase. One hundred and nineteen identified genes were sorted into 11 functional categories, with genes associated with energy metabolism being the most abundant (13%) and diverse. The diversity and abundance of genes associated with the transcription/translation machinery and with regulatory/signaling functions were also marked. A paramyosin transcript was identified, indicating that this gene is not exclusively expressed in adult worms and sporocysts (as had been suggested previously). The possible physiological relevance to cercariae of the presence of transcripts with homology to calcium binding proteins of the EF-hand superfamily, Gq-coupled rhodopsin photoreceptor, rod phosphodiesterase 8 subunit and peripheral-type benzodiazepine receptor is discussed.
Animals, DNA, Complementary/genetics, DNA, Helminth/genetics, Expressed Sequence Tags, Gene Expression, Gene Library, Genes, Helminth, Molecular Sequence Data, Schistosoma mansoni/genetics
0166-6851
79-97
Santos, T M
04817dfd-fc86-4801-88f4-e3d54319fe39
Johnston, D A
b41163c9-b9d2-425c-af99-2a357204014e
Azevedo, V
8711505a-fe8b-4e8e-ac10-0336439dd72b
Ridgers, I L
512acf1b-fcbe-4fd3-936c-b6e89db21f3c
Martinez, M F
be1c4ec5-3912-4b0f-a82b-f7776e78929e
Marotta, G B
25825550-8586-4839-8027-0cc9ae3c827b
Santos, R L
912172c3-0bc3-484e-8f4c-369ab8c42a1e
Fonseca, S J
e2f45111-d8dd-4aba-911d-e7424e964fff
Ortega, J M
be0b8e1b-992d-435b-bb17-5d0047ca6f2e
Rabelo, E M
e6219748-bcdf-4671-b841-94f04e7b105e
Saber, M
d7acaa0f-82df-4752-bb65-663ce0171cad
Ahmed, H M
0c5389a5-2ff9-4077-9238-3ca180940685
Romeih, M H
fa3326ea-7189-4064-86de-d05dfff4df6f
Franco, G R
0cd1cb8b-8b1a-4e02-9628-bf3aa8868a29
Rollinson, D
917d0e09-176f-4058-89ff-ec2ad3a496ad
Pena, S. D.
a24e6d9a-ee82-4959-a345-70472c52fec4
Santos, T M
04817dfd-fc86-4801-88f4-e3d54319fe39
Johnston, D A
b41163c9-b9d2-425c-af99-2a357204014e
Azevedo, V
8711505a-fe8b-4e8e-ac10-0336439dd72b
Ridgers, I L
512acf1b-fcbe-4fd3-936c-b6e89db21f3c
Martinez, M F
be1c4ec5-3912-4b0f-a82b-f7776e78929e
Marotta, G B
25825550-8586-4839-8027-0cc9ae3c827b
Santos, R L
912172c3-0bc3-484e-8f4c-369ab8c42a1e
Fonseca, S J
e2f45111-d8dd-4aba-911d-e7424e964fff
Ortega, J M
be0b8e1b-992d-435b-bb17-5d0047ca6f2e
Rabelo, E M
e6219748-bcdf-4671-b841-94f04e7b105e
Saber, M
d7acaa0f-82df-4752-bb65-663ce0171cad
Ahmed, H M
0c5389a5-2ff9-4077-9238-3ca180940685
Romeih, M H
fa3326ea-7189-4064-86de-d05dfff4df6f
Franco, G R
0cd1cb8b-8b1a-4e02-9628-bf3aa8868a29
Rollinson, D
917d0e09-176f-4058-89ff-ec2ad3a496ad
Pena, S. D.
a24e6d9a-ee82-4959-a345-70472c52fec4

Santos, T M, Johnston, D A, Azevedo, V, Ridgers, I L, Martinez, M F, Marotta, G B, Santos, R L, Fonseca, S J, Ortega, J M, Rabelo, E M, Saber, M, Ahmed, H M, Romeih, M H, Franco, G R, Rollinson, D and Pena, S. D. (1999) Analysis of the gene expression profile of Schistosoma mansoni cercariae using the expressed sequence tag approach. Molecular and Biochemical Parasitology, 103 (1), 79-97. (doi:10.1016/s0166-6851(99)00100-0).

Record type: Article

Abstract

ESTs constitute rapid and informative tools with which to study gene-expression profiles of the diverse stages of the schistosome life cycle. Following a comprehensive EST study of adult worms, analysis has now targeted the cercaria, the parasite larval form responsible for infection of the vertebrate host. Two Schistosoma mansoni cercarial cDNA libraries were examined and partial sequence obtained from 957 randomly selected clones. On the basis of database searches, 551 (57.6%) ESTs generated had no homologs in the public databases whilst 308 (32.2%) were putatively identified, totaling 859 informative ESTs. The remaining 98 (10.2%) were uninformative ESTs (ribosomal RNA and non-coding mitochondrial sequences). By clustering analysis we have identified 453 different genes. The most common sequences in both libraries represented Sm8 calcium binding protein (8% of ESTs), fructose-1,6-bisphosphate aldolase, glyceraldehyde-3-phosphate dehydrogenase, cytochrome oxidase subunit 1, ATP guanidine kinase and triose phosphate isomerase. One hundred and nineteen identified genes were sorted into 11 functional categories, with genes associated with energy metabolism being the most abundant (13%) and diverse. The diversity and abundance of genes associated with the transcription/translation machinery and with regulatory/signaling functions were also marked. A paramyosin transcript was identified, indicating that this gene is not exclusively expressed in adult worms and sporocysts (as had been suggested previously). The possible physiological relevance to cercariae of the presence of transcripts with homology to calcium binding proteins of the EF-hand superfamily, Gq-coupled rhodopsin photoreceptor, rod phosphodiesterase 8 subunit and peripheral-type benzodiazepine receptor is discussed.

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More information

Published date: 20 September 1999
Keywords: Animals, DNA, Complementary/genetics, DNA, Helminth/genetics, Expressed Sequence Tags, Gene Expression, Gene Library, Genes, Helminth, Molecular Sequence Data, Schistosoma mansoni/genetics

Identifiers

Local EPrints ID: 468937
URI: http://eprints.soton.ac.uk/id/eprint/468937
ISSN: 0166-6851
PURE UUID: a6613a3c-ad95-4e90-92d6-4b64dee98f9f
ORCID for D A Johnston: ORCID iD orcid.org/0000-0001-6703-6014

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Date deposited: 01 Sep 2022 17:00
Last modified: 17 Mar 2024 03:11

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Contributors

Author: T M Santos
Author: D A Johnston ORCID iD
Author: V Azevedo
Author: I L Ridgers
Author: M F Martinez
Author: G B Marotta
Author: R L Santos
Author: S J Fonseca
Author: J M Ortega
Author: E M Rabelo
Author: M Saber
Author: H M Ahmed
Author: M H Romeih
Author: G R Franco
Author: D Rollinson
Author: S. D. Pena

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