Biologically driven neural platform invoking parallel electrophoretic separation and urinary metabolite screening

Page, Tessa, Nguyen, Huong Thi Huynh, Hilts, Lindsey, Ramos, Lorena and Hanrahan, Grady (2012) Biologically driven neural platform invoking parallel electrophoretic separation and urinary metabolite screening. Analytical and Bioanalytical Chemistry, 403 (8), 2367–2375. (doi:10.1007/s00216-012-5719-y).

Abstract

This work reveals a computational framework for parallel electrophoretic separation of complex biological macromolecules and model urinary metabolites. More specifically, the implementation of a particle swarm optimization (PSO) algorithm on a neural network platform for multiparameter optimization of multiplexed 24-capillary electrophoresis technology with UV detection is highlighted. Two experimental systems were examined: (1) separation of purified rabbit metallothioneins and (2) separation of model toluene urinary metabolites and selected organic acids. Results proved superior to the use of neural networks employing standard back propagation when examining training error, fitting response, and predictive abilities. Simulation runs were obtained as a result of metaheuristic examination of the global search space with experimental responses in good agreement with predicted values. Full separation of selected analytes was realized after employing optimal model conditions. This framework provides guidance for the application of metaheuristic computational tools to aid in future studies involving parallel chemical separation and screening. Adaptable pseudo-code is provided to enable users of varied software packages and modeling framework to implement the PSO algorithm for their desired use.

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Contributors

Author: Tessa Page

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