The University of Southampton
University of Southampton Institutional Repository

Factors influencing the three-dimensional structure of urinary biofilms

Factors influencing the three-dimensional structure of urinary biofilms
Factors influencing the three-dimensional structure of urinary biofilms
Catheter-associated urinary tract infection is the most common type of urinary tract infection among healthcare-associated infections that are caused by biofilms developing on the catheter. The study aims to investigate the urinary biofilm characteristics and the genes associated with the biofilm formation on the urinary catheter. Rapid cell attachment occurred as early as 1 h showed that the artificial urine medium supports biofilm growth of uropathogens. AUBK is the most physicochemically similar artificial urine media to urine that promoted better biofilm development on the urinary catheter compared to other laboratory media. Pseudomonas aeruginosa PAO1 is studied as a model organism for urinary biofilm to describe the biofilm development common traits, including the initial attachment, aggregation of cells, and the build-up of microcolonies surrounded by the extracellular polymeric substances. Screening of urease, quorum-sensing, polysaccharide and attachment/motility gene mutants showed that the involvement of the genes differs at different stages of biofilm development. Mutants of rhlB, pelA, pslD, fliC, fliM, pilA biofilm were affected at 1 h during essential initial cell adherence that prevents cells from returning to the planktonic state. Mutants with lasI, rhlI, pqsA, pqsE and fliC produced flat biofilms instead of the characteristic three-dimensional mature biofilm at 24 h, showing that biofilm was unable to differentiate into mature biofilms without cell signalling and flagella-mediated motility. Biofilms of urease and alginate gene-deficient mutants were not affected and had no significant role in urinary biofilm. We also discovered a new, unreported unique feature in the P. aeruginosa PAO1 urinary biofilm formation that mediates cell translocation to the nearest microcolony, observed at 1 h and 3 h timepoints. This study highlights the roles of essential genes in biofilm formation as well as the need to use appropriate artificial urine medium in the urinary biofilm studies as nutrient availability impacts profoundly on urinary biofilm growth and development.
University of Southampton
Rahimi, Nany Malissa Binti
8008dba1-fd99-4071-9528-325a77f9d0ba
Rahimi, Nany Malissa Binti
8008dba1-fd99-4071-9528-325a77f9d0ba
Keevil, Charles
cb7de0a7-ce33-4cfa-af52-07f99e5650eb
Wilks, Sandra
86c1f41a-12b3-451c-9245-b1a21775e993

Rahimi, Nany Malissa Binti (2022) Factors influencing the three-dimensional structure of urinary biofilms. University of Southampton, Doctoral Thesis, 265pp.

Record type: Thesis (Doctoral)

Abstract

Catheter-associated urinary tract infection is the most common type of urinary tract infection among healthcare-associated infections that are caused by biofilms developing on the catheter. The study aims to investigate the urinary biofilm characteristics and the genes associated with the biofilm formation on the urinary catheter. Rapid cell attachment occurred as early as 1 h showed that the artificial urine medium supports biofilm growth of uropathogens. AUBK is the most physicochemically similar artificial urine media to urine that promoted better biofilm development on the urinary catheter compared to other laboratory media. Pseudomonas aeruginosa PAO1 is studied as a model organism for urinary biofilm to describe the biofilm development common traits, including the initial attachment, aggregation of cells, and the build-up of microcolonies surrounded by the extracellular polymeric substances. Screening of urease, quorum-sensing, polysaccharide and attachment/motility gene mutants showed that the involvement of the genes differs at different stages of biofilm development. Mutants of rhlB, pelA, pslD, fliC, fliM, pilA biofilm were affected at 1 h during essential initial cell adherence that prevents cells from returning to the planktonic state. Mutants with lasI, rhlI, pqsA, pqsE and fliC produced flat biofilms instead of the characteristic three-dimensional mature biofilm at 24 h, showing that biofilm was unable to differentiate into mature biofilms without cell signalling and flagella-mediated motility. Biofilms of urease and alginate gene-deficient mutants were not affected and had no significant role in urinary biofilm. We also discovered a new, unreported unique feature in the P. aeruginosa PAO1 urinary biofilm formation that mediates cell translocation to the nearest microcolony, observed at 1 h and 3 h timepoints. This study highlights the roles of essential genes in biofilm formation as well as the need to use appropriate artificial urine medium in the urinary biofilm studies as nutrient availability impacts profoundly on urinary biofilm growth and development.

Text
N Malissa_Rahimi_FINAL thesis PhD - Version of Record
Available under License University of Southampton Thesis Licence.
Download (48MB)
Text
Permission to deposit thesis - form_NMR_CWK
Restricted to Repository staff only
Available under License University of Southampton Thesis Licence.

More information

Submitted date: 20 April 2020
Published date: September 2022

Identifiers

Local EPrints ID: 469098
URI: http://eprints.soton.ac.uk/id/eprint/469098
PURE UUID: ffe63d0e-7472-49fe-b4d8-9b6ee325fb3f
ORCID for Charles Keevil: ORCID iD orcid.org/0000-0003-1917-7706
ORCID for Sandra Wilks: ORCID iD orcid.org/0000-0002-4134-9415

Catalogue record

Date deposited: 06 Sep 2022 18:47
Last modified: 17 Mar 2024 07:28

Export record

Contributors

Author: Nany Malissa Binti Rahimi
Thesis advisor: Charles Keevil ORCID iD
Thesis advisor: Sandra Wilks ORCID iD

Download statistics

Downloads from ePrints over the past year. Other digital versions may also be available to download e.g. from the publisher's website.

View more statistics

Atom RSS 1.0 RSS 2.0

Contact ePrints Soton: eprints@soton.ac.uk

ePrints Soton supports OAI 2.0 with a base URL of http://eprints.soton.ac.uk/cgi/oai2

This repository has been built using EPrints software, developed at the University of Southampton, but available to everyone to use.

We use cookies to ensure that we give you the best experience on our website. If you continue without changing your settings, we will assume that you are happy to receive cookies on the University of Southampton website.

×