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Long read genome assembly, gene and tRNA annotation of the tropical legume Lablab purpureus.

Long read genome assembly, gene and tRNA annotation of the tropical legume Lablab purpureus.
Long read genome assembly, gene and tRNA annotation of the tropical legume Lablab purpureus.
The data includes the fasta file for the 11 assembled pseudomolecules, the fasta files for gene cds and peptide sequences as well as GFF annotation files for genes and tRNAs. In the case of more than one splice variant per gene locus the longest cds was used as representative gene model. The results described in the bioRxiv preprint "Chromosome-scale assembly of the lablab genome - A model for inclusive orphan crop genomics" (https://doi.org/10.1101/2022.05.08.491073) are based on this data set. Data management and annotation was supported by de.NBI (www.denbi.de, 031A536, German Ministry of Education and Research).
IPK Gatersleben
Waweru, Bernice
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Gundlach, Heidrun
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Maranga, Mary
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Maass, Brigitte
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Domelevo Entfellner, Jean-Baka
dc8dcc74-6277-4eac-908b-24c5cce3de91
Spannagl, Manuel
7abab4d0-0e19-4133-b8fb-af25c9bf5750
Shorinola, Oluwaseyi
38d2987d-925f-4c99-8a4c-16477dc8522c
Jones, Chris
7a00de74-7554-4b5c-b746-c995ace18af7
Muktar, Meki
b2266f27-4692-4301-bf94-16356aa34f16
Kaimenyi, Davies
fe13a233-35ec-4590-9076-a5679638224a
Muli, Collins Muthini
278126b5-f7b2-4c3c-8bbb-cfd47c078ed2
Emmrich, Peter
78956f59-d16d-4696-9a3b-24c49abfb270
Kamal, Nadia
39ee1d0a-cd88-42e3-82dd-6486bb8b51fe
Fisher, David
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Chapman, Mark
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Njaci, Isaac
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Muthui, Lucy
ffe1ba34-e803-4a01-8b7c-1d06850f4958
Waweru, Bernice
29508860-c435-40a3-9320-5dd649895f23
Gundlach, Heidrun
f314b805-6d58-449a-b3e3-6bd67cdfc49c
Maranga, Mary
60dcdd43-0a5b-44a3-b6a3-b91afcbb265a
Maass, Brigitte
ef9d4be9-6c21-4781-b8da-21b19639aea8
Domelevo Entfellner, Jean-Baka
dc8dcc74-6277-4eac-908b-24c5cce3de91
Spannagl, Manuel
7abab4d0-0e19-4133-b8fb-af25c9bf5750
Shorinola, Oluwaseyi
38d2987d-925f-4c99-8a4c-16477dc8522c
Jones, Chris
7a00de74-7554-4b5c-b746-c995ace18af7
Muktar, Meki
b2266f27-4692-4301-bf94-16356aa34f16
Kaimenyi, Davies
fe13a233-35ec-4590-9076-a5679638224a
Muli, Collins Muthini
278126b5-f7b2-4c3c-8bbb-cfd47c078ed2
Emmrich, Peter
78956f59-d16d-4696-9a3b-24c49abfb270
Kamal, Nadia
39ee1d0a-cd88-42e3-82dd-6486bb8b51fe
Fisher, David
3731734e-9dbd-48fc-b5c0-ec0f5c42d763
Chapman, Mark
8bac4a92-bfa7-4c3c-af29-9af852ef6383
Njaci, Isaac
4bc976d6-347d-475d-b704-f79338eacdd7
Muthui, Lucy
ffe1ba34-e803-4a01-8b7c-1d06850f4958

(2022) Long read genome assembly, gene and tRNA annotation of the tropical legume Lablab purpureus. IPK Gatersleben doi:10.5447/ipk/2022/26 [Dataset]

Record type: Dataset

Abstract

The data includes the fasta file for the 11 assembled pseudomolecules, the fasta files for gene cds and peptide sequences as well as GFF annotation files for genes and tRNAs. In the case of more than one splice variant per gene locus the longest cds was used as representative gene model. The results described in the bioRxiv preprint "Chromosome-scale assembly of the lablab genome - A model for inclusive orphan crop genomics" (https://doi.org/10.1101/2022.05.08.491073) are based on this data set. Data management and annotation was supported by de.NBI (www.denbi.de, 031A536, German Ministry of Education and Research).

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More information

Published date: 1 January 2022
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Identifiers

Local EPrints ID: 472229
URI: http://eprints.soton.ac.uk/id/eprint/472229
DOI: doi:10.5447/ipk/2022/26
PURE UUID: c4d8b3f8-ba61-4db1-ae43-8a099e2dd4f8
ORCID for David Fisher: ORCID iD orcid.org/0000-0002-7947-3366
ORCID for Mark Chapman: ORCID iD orcid.org/0000-0002-7151-723X

Catalogue record

Date deposited: 29 Nov 2022 17:56
Last modified: 06 May 2023 02:02

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Contributors

Contributor: Bernice Waweru
Contributor: Heidrun Gundlach
Contributor: Mary Maranga
Contributor: Brigitte Maass
Contributor: Jean-Baka Domelevo Entfellner
Contributor: Manuel Spannagl
Contributor: Oluwaseyi Shorinola
Contributor: Chris Jones
Contributor: Meki Muktar
Contributor: Davies Kaimenyi
Contributor: Collins Muthini Muli
Contributor: Peter Emmrich
Contributor: Nadia Kamal
Contributor: David Fisher ORCID iD
Contributor: Mark Chapman ORCID iD
Contributor: Isaac Njaci
Contributor: Lucy Muthui

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