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Does a machine-learned potential perform better than an optimally tuned traditional force field?: a case study on fluorohydrins

Does a machine-learned potential perform better than an optimally tuned traditional force field?: a case study on fluorohydrins
Does a machine-learned potential perform better than an optimally tuned traditional force field?: a case study on fluorohydrins
We present a comparative study that evaluates the performance of a machine learning potential (ANI-2x), a conventional force field (GAFF), and an optimally tuned GAFF-like force field in the modeling of a set of 10 γ-fluorohydrins that exhibit a complex interplay between intra- and intermolecular interactions in determining conformer stability. To benchmark the performance of each molecular model, we evaluated their energetic, geometric, and sampling accuracies relative to quantum-mechanical data. This benchmark involved conformational analysis both in the gas phase and chloroform solution. We also assessed the performance of the aforementioned molecular models in estimating nuclear spin–spin coupling constants by comparing their predictions to experimental data available in chloroform. The results and discussion presented in this study demonstrate that ANI-2x tends to predict stronger-than-expected hydrogen bonding and overstabilize global minima and shows problems related to inadequate description of dispersion interactions. Furthermore, while ANI-2x is a viable model for modeling in the gas phase, conventional force fields still play an important role, especially for condensed-phase simulations. Overall, this study highlights the strengths and weaknesses of each model, providing guidelines for the use and future development of force fields and machine learning potentials.
1549-9596
2810-2827
Morado, João
f83f0c26-bbe3-420c-9999-e22ab439c9c6
Mortenson, Paul N.
765f1d79-fcd6-4104-b033-b534d8d31f65
Nissink, J. Willem M.
54572021-91eb-4562-a80b-1b633bb94db5
Essex, Jonathan W.
1f409cfe-6ba4-42e2-a0ab-a931826314b5
Skylaris, Chris-kriton
8f593d13-3ace-4558-ba08-04e48211af61
Morado, João
f83f0c26-bbe3-420c-9999-e22ab439c9c6
Mortenson, Paul N.
765f1d79-fcd6-4104-b033-b534d8d31f65
Nissink, J. Willem M.
54572021-91eb-4562-a80b-1b633bb94db5
Essex, Jonathan W.
1f409cfe-6ba4-42e2-a0ab-a931826314b5
Skylaris, Chris-kriton
8f593d13-3ace-4558-ba08-04e48211af61

Morado, João, Mortenson, Paul N., Nissink, J. Willem M., Essex, Jonathan W. and Skylaris, Chris-kriton (2023) Does a machine-learned potential perform better than an optimally tuned traditional force field?: a case study on fluorohydrins. Journal of Chemical Information and Modeling, 63 (9), 2810-2827. (doi:10.1021/acs.jcim.2c01510).

Record type: Article

Abstract

We present a comparative study that evaluates the performance of a machine learning potential (ANI-2x), a conventional force field (GAFF), and an optimally tuned GAFF-like force field in the modeling of a set of 10 γ-fluorohydrins that exhibit a complex interplay between intra- and intermolecular interactions in determining conformer stability. To benchmark the performance of each molecular model, we evaluated their energetic, geometric, and sampling accuracies relative to quantum-mechanical data. This benchmark involved conformational analysis both in the gas phase and chloroform solution. We also assessed the performance of the aforementioned molecular models in estimating nuclear spin–spin coupling constants by comparing their predictions to experimental data available in chloroform. The results and discussion presented in this study demonstrate that ANI-2x tends to predict stronger-than-expected hydrogen bonding and overstabilize global minima and shows problems related to inadequate description of dispersion interactions. Furthermore, while ANI-2x is a viable model for modeling in the gas phase, conventional force fields still play an important role, especially for condensed-phase simulations. Overall, this study highlights the strengths and weaknesses of each model, providing guidelines for the use and future development of force fields and machine learning potentials.

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More information

e-pub ahead of print date: 18 April 2023
Published date: 8 May 2023
Additional Information: Funding Information: The authors thank Prof. Dr. Bruno Linclau for the very helpful comments and suggestions regarding the NMR analysis presented in this study. The authors acknowledge the use of the IRIDIS High Performance Computing Facility and associated support services at the University of Southampton as well as the Tier 2 HPC facility JADE2, funded by the HECBioSim Consortium through EPSRC (EP/P020275/1) for providing the computational resources used in the completion of this work. The authors also thank AstraZeneca for funding this study and are grateful for the support from the EPSRC Centre for Doctoral Training, Theory and Modelling in Chemical Sciences under Grant EP/L015722/1. Funding Information: The authors declare the following competing financial interest(s): This research was partially funded by AstraZeneca. Acknowledgments Publisher Copyright: © 2023 The Authors. Published by American Chemical Society.

Identifiers

Local EPrints ID: 476757
URI: http://eprints.soton.ac.uk/id/eprint/476757
ISSN: 1549-9596
PURE UUID: f32c7524-6b2e-4cc4-9bba-ebcca634d486
ORCID for Jonathan W. Essex: ORCID iD orcid.org/0000-0003-2639-2746
ORCID for Chris-kriton Skylaris: ORCID iD orcid.org/0000-0003-0258-3433

Catalogue record

Date deposited: 15 May 2023 16:31
Last modified: 18 Mar 2024 03:04

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Contributors

Author: João Morado
Author: Paul N. Mortenson
Author: J. Willem M. Nissink

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