Toward a common standard for data and specimen provenance in life sciences

Accepted/In Press date: 24 March 2023

e-pub ahead of print date: 18 April 2023

Published date: 18 April 2023

Additional Information: Funding Information: This work has been co‐funded by EOSC‐Life supported by EU Horizon 2020, grant agreement no. 824087; EJP‐RD supported by EU Horizon 2020, grant agreement no. 825575; BioExcel‐2 supported by EU Horizon 2020, grant agreement no. 823830; the PAM and the XDATA Projects, funded by the Sardinian Regional Authority. VC and MCh are supported by the National Institute for Health Research (NIHR) Biomedical Research Centre based at Guy's and St Thomas’ National Health Service (NHS) Foundation Trust and King's College London (RJ112/N027) and by NIHR Application Research Collaboration South London (ARC SL). TB, MCo acknowledges funding from EMBL‐EBI Core Funds and the FAIRplus project (H2020 No 802750). MCo was supported by Wellcome Trust GA4GH award number 201535/Z/16/Z and the CINECA project (H2020 No 825775). AC was supported by EPSRC (EP/S028366/1). JS was supported by the US National Institute of Health (U24 EB028887, R01 GM122424, and OT2OD026671), the US National Science Foundation (NSF 2054061), and the US EPA (RD840027). ME was supported by the Alan Turing Institute (ProvAnon). KZ was supported by the Bundesministerium für Bildung, Wissenschaft und Forschung (Federal Ministry of Education, Science and Research of Austria) (BMBWF‐10.470/0010‐V/3c/2018). CS was supported by NIH grant #U01CA200059 and by grant #2019‐198155 (5022) awarded by the Chan Zuckerberg Initiative DAF, an advised fund of Silicon Valley Community Foundation, as part of their Imaging Scientist Program. The opinions in this paper are those of the authors and do not necessarily reflect the opinions of the funders. Representation of communities: The co‐author's team represents a wide coverage of life‐sciences communities. PH, RW, CM, FF, HM, MP, and JG come from human biobanking and biomolecular resources communities, BBMRI‐ERIC Research Infrastructure, and are directly involved as experts in the ISO standardization process. KZ and JE come from cancer research, biobanking, and medical informatics and are long‐term contributors to data quality standardization efforts. TB, MCo is a director of Ontario Institute for Cancer Research. IC and KE come from marine biology and EMBRC Research Infrastructure. CG and SSR have worked with bioinformatics, CWL, and RO‐Crate. JRS and JM come from bio‐imaging communities and EUBioImaging Research Infrastructure. VC and MCh come from health informatics. HN participates in the provenance standardization process as an expert from Japan, MS and JS as experts from the United States, and AK as an expert from Luxembourg. ME contributes to privacy protection and provenance aspects. FB is a biobanking expert and director of the microbiological resource center CRBIP, Institut Pasteur. AS is a biobanking expert and ESBB councilor. SL‐G and CA are from NIST and convenor and secretary of ISO/TC 276/WG 3 “Analytical Methods.” AM belongs to the tissue engineering and biomedical research community. MM is a standard expert in the digital media, genomic sequencing, and annotation data fields, and convenor of ISO/IEC SC29/WG 8 “MPEG Genomic Coding.” AC contributes to the capture and handling of provenance within large organizations. CS is a Cell Biologists actively engaged in the development of quality control and reproducibility specifications and tools for light microscopy as a member of the Data Coordination and Integration Center of the NIH‐funded 4D Nucleome initiative, Chair of the Quality Control and Data Management WG of BioImaging North America, and Co‐Chair of the WG on Metadata (WG7) of the QUality Assessment and REProducibility for Instruments and Images in Light‐Microscopy (QUAREP‐LiMI) initiative. SLe is a member of the RO‐Crate community and co‐chair of a working group for the development of an RO‐Crate profile for capturing the provenance of scientific workflow executions. Publisher Copyright: © 2023 The Authors. Learning Health Systems published by Wiley Periodicals LLC on behalf of University of Michigan.

Keywords: International Organization for Standardization, biotechnology, provenance information, standardization

Local EPrints ID: 477634

URI: http://eprints.soton.ac.uk/id/eprint/477634

DOI: doi:10.1002/lrh2.10365

ISSN: 2379-6146

PURE UUID: 8a06e7e4-01c8-4d29-9acf-7f0e4a42ba99

ORCID for Adriane Chapman: orcid.org/0000-0002-3814-2587

Date deposited: 12 Jun 2023 16:30

Last modified: 17 Mar 2024 03:46