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Gut microbiology of UK care home residents: cross-sectional analysis from a randomised controlled trial

Gut microbiology of UK care home residents: cross-sectional analysis from a randomised controlled trial
Gut microbiology of UK care home residents: cross-sectional analysis from a randomised controlled trial
Objective: to describe prevalence of potentially clinically relevant gut pathogens and associations with carriage of resistant organisms in UK care home residents.

Methods: stool samples were collected pre-randomisation from care home residents participating in a randomised placebo-controlled trial. Cultivable clinically relevant bacteria were analysed. Antimicrobial susceptibility testing was performed by agar dilution (amoxicillin, co-amoxiclav, gentamicin, trimethoprim, nitrofurantoin, and ciprofloxacin). We also aimed to detect resistance to third-generation cephalosporins, carbapenems, and vancomycin.

Results: stool samples were available for 159/310 residents participating in the trial (51%) from 23 care homes between 2016 and 2018. In total, 402 bacterial isolates were cultured from 158 stool samples and 29 different species were cultured. The five most common species were Escherichia coli (155/158, 98%), Pseudomonas aeruginosa (40/158, 25%), Enterococcus faecalis (35/158, 22%), Enterococcus faecium (30/158, 19%), and Proteus mirabilis (25/158, 16%). Enterobacterales isolates were cultured from 157 samples (99%), and resistance to at least one of the tested antimicrobials was found in 119 of these (76%). There were high levels of variation in outcomes by care home.

Conclusions: we demonstrated that care home residents harbour significant levels of antimicrobial-resistant organisms in their stool. This work emphasises the importance of both enhanced infection control practices and antimicrobial stewardship programmes to support appropriate use of antimicrobials in this setting.
1198-743X
Gillespie, David
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Wootton, Mandy
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Ray, Ruby
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Calder, Philip
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Lau, Tin Man Mandy
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Owen-Jones, Eleri
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Lowe, Rachel
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Davies, Leanne
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Richards, Jennifer
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Hood, Kerenza
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Castro-Herrera, Vivian
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Davies, Jane
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Francis, Nick A.
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Hobbs, Richard
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Lown, Mark
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Moore, Michael
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Shepherd, Victoria
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Butler, Christopher C.
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Gillespie, David
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Wootton, Mandy
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Ray, Ruby
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Calder, Philip
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Lau, Tin Man Mandy
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Owen-Jones, Eleri
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Lowe, Rachel
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Davies, Leanne
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Richards, Jennifer
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Hood, Kerenza
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Castro-Herrera, Vivian
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Davies, Jane
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Francis, Nick A.
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Hobbs, Richard
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Lown, Mark
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Moore, Michael
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Shepherd, Victoria
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Butler, Christopher C.
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Gillespie, David, Wootton, Mandy, Ray, Ruby, Calder, Philip, Lau, Tin Man Mandy, Owen-Jones, Eleri, Lowe, Rachel, Davies, Leanne, Richards, Jennifer, Hood, Kerenza, Castro-Herrera, Vivian, Davies, Jane, Francis, Nick A., Hobbs, Richard, Lown, Mark, Moore, Michael, Shepherd, Victoria and Butler, Christopher C. (2023) Gut microbiology of UK care home residents: cross-sectional analysis from a randomised controlled trial. Clinical Microbiology and Infection. (In Press)

Record type: Article

Abstract

Objective: to describe prevalence of potentially clinically relevant gut pathogens and associations with carriage of resistant organisms in UK care home residents.

Methods: stool samples were collected pre-randomisation from care home residents participating in a randomised placebo-controlled trial. Cultivable clinically relevant bacteria were analysed. Antimicrobial susceptibility testing was performed by agar dilution (amoxicillin, co-amoxiclav, gentamicin, trimethoprim, nitrofurantoin, and ciprofloxacin). We also aimed to detect resistance to third-generation cephalosporins, carbapenems, and vancomycin.

Results: stool samples were available for 159/310 residents participating in the trial (51%) from 23 care homes between 2016 and 2018. In total, 402 bacterial isolates were cultured from 158 stool samples and 29 different species were cultured. The five most common species were Escherichia coli (155/158, 98%), Pseudomonas aeruginosa (40/158, 25%), Enterococcus faecalis (35/158, 22%), Enterococcus faecium (30/158, 19%), and Proteus mirabilis (25/158, 16%). Enterobacterales isolates were cultured from 157 samples (99%), and resistance to at least one of the tested antimicrobials was found in 119 of these (76%). There were high levels of variation in outcomes by care home.

Conclusions: we demonstrated that care home residents harbour significant levels of antimicrobial-resistant organisms in their stool. This work emphasises the importance of both enhanced infection control practices and antimicrobial stewardship programmes to support appropriate use of antimicrobials in this setting.

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Gut microbiology of UK care home residents R2 28072023 CLEAN - Accepted Manuscript
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Accepted/In Press date: 1 August 2023

Identifiers

Local EPrints ID: 480618
URI: http://eprints.soton.ac.uk/id/eprint/480618
ISSN: 1198-743X
PURE UUID: a1204c82-1607-4c68-a801-de23326d16f3
ORCID for Philip Calder: ORCID iD orcid.org/0000-0002-6038-710X

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Date deposited: 08 Aug 2023 16:30
Last modified: 01 Aug 2024 04:01

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Contributors

Author: David Gillespie
Author: Mandy Wootton
Author: Ruby Ray
Author: Philip Calder ORCID iD
Author: Tin Man Mandy Lau
Author: Eleri Owen-Jones
Author: Rachel Lowe
Author: Leanne Davies
Author: Jennifer Richards
Author: Kerenza Hood
Author: Vivian Castro-Herrera
Author: Jane Davies
Author: Nick A. Francis
Author: Richard Hobbs
Author: Mark Lown
Author: Michael Moore
Author: Victoria Shepherd
Author: Christopher C. Butler

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