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Call detail record aggregation methodology impacts infectious disease models informed by human mobility

Call detail record aggregation methodology impacts infectious disease models informed by human mobility
Call detail record aggregation methodology impacts infectious disease models informed by human mobility

This paper demonstrates how two different methods used to calculate population-level mobility from Call Detail Records (CDR) produce varying predictions of the spread of epidemics informed by these data. Our findings are based on one CDR dataset describing inter-district movement in Ghana in 2021, produced using two different aggregation methodologies. One methodology, "all pairs," is designed to retain long distance network connections while the other, "sequential" methodology is designed to accurately reflect the volume of travel between locations. We show how the choice of methodology feeds through models of human mobility to the predictions of a metapopulation SEIR model of disease transmission. We also show that this impact varies depending on the location of pathogen introduction and the transmissibility of infections. For central locations or highly transmissible diseases, we do not observe significant differences between aggregation methodologies on the predicted spread of disease. For less transmissible diseases or those introduced into remote locations, we find that the choice of aggregation methodology influences the speed of spatial spread as well as the size of the peak number of infections in individual districts. Our findings can help researchers and users of epidemiological models to understand how methodological choices at the level of model inputs may influence the results of models of infectious disease transmission, as well as the circumstances in which these choices do not alter model predictions.

1553-734X
e1011368
Gibbs, Hamish
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Musah, Anwar
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Seidu, Omar
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Ampofo, William
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Asiedu-Bekoe, Franklin
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Gray, Jonathan
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Adewole, Wole A
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Cheshire, James
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Marks, Michael
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Eggo, Rosalind M
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Gibbs, Hamish
40e3596b-3313-42ac-970a-b7f8bff7c63c
Musah, Anwar
46864a00-d9bc-4aed-8ae0-157762d43d26
Seidu, Omar
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Ampofo, William
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Asiedu-Bekoe, Franklin
fcaf4c51-8ea0-4a70-abe5-fff19e19e9a0
Gray, Jonathan
93c44ff0-29b8-48a1-be30-09be7d129ed1
Adewole, Wole A
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Cheshire, James
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Marks, Michael
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Eggo, Rosalind M
150c61b4-762d-4356-9924-1cdb75126db6

Gibbs, Hamish, Musah, Anwar, Seidu, Omar, Ampofo, William, Asiedu-Bekoe, Franklin, Gray, Jonathan, Adewole, Wole A, Cheshire, James, Marks, Michael and Eggo, Rosalind M (2023) Call detail record aggregation methodology impacts infectious disease models informed by human mobility. PLoS Computational Biology, 19 (8 August), e1011368, [e1011368]. (doi:10.1371/journal.pcbi.1011368).

Record type: Article

Abstract

This paper demonstrates how two different methods used to calculate population-level mobility from Call Detail Records (CDR) produce varying predictions of the spread of epidemics informed by these data. Our findings are based on one CDR dataset describing inter-district movement in Ghana in 2021, produced using two different aggregation methodologies. One methodology, "all pairs," is designed to retain long distance network connections while the other, "sequential" methodology is designed to accurately reflect the volume of travel between locations. We show how the choice of methodology feeds through models of human mobility to the predictions of a metapopulation SEIR model of disease transmission. We also show that this impact varies depending on the location of pathogen introduction and the transmissibility of infections. For central locations or highly transmissible diseases, we do not observe significant differences between aggregation methodologies on the predicted spread of disease. For less transmissible diseases or those introduced into remote locations, we find that the choice of aggregation methodology influences the speed of spatial spread as well as the size of the peak number of infections in individual districts. Our findings can help researchers and users of epidemiological models to understand how methodological choices at the level of model inputs may influence the results of models of infectious disease transmission, as well as the circumstances in which these choices do not alter model predictions.

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More information

Accepted/In Press date: 17 July 2023
e-pub ahead of print date: 10 August 2023
Published date: 10 August 2023
Additional Information: Copyright: © 2023 Gibbs et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Identifiers

Local EPrints ID: 481077
URI: http://eprints.soton.ac.uk/id/eprint/481077
ISSN: 1553-734X
PURE UUID: 9b3738a5-85eb-450b-8794-ab4010c2503d
ORCID for Wole A Adewole: ORCID iD orcid.org/0000-0002-7538-9781

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Date deposited: 15 Aug 2023 16:44
Last modified: 17 Mar 2024 04:08

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Contributors

Author: Hamish Gibbs
Author: Anwar Musah
Author: Omar Seidu
Author: William Ampofo
Author: Franklin Asiedu-Bekoe
Author: Jonathan Gray
Author: Wole A Adewole ORCID iD
Author: James Cheshire
Author: Michael Marks
Author: Rosalind M Eggo

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