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Rule-based deep learning method for prognosis of neonatal hypoxic-ischaemic encephalopathy by using susceptibility weighted image analysis

Rule-based deep learning method for prognosis of neonatal hypoxic-ischaemic encephalopathy by using susceptibility weighted image analysis
Rule-based deep learning method for prognosis of neonatal hypoxic-ischaemic encephalopathy by using susceptibility weighted image analysis
Susceptibility weighted imaging (SWI) of neonatal hypoxic-ischaemic brain injury can provide assistance in the prognosis of neonatal hypoxic-ischaemic encephalopathy (HIE). We propose a convolutional neural network model to classify SWI images with HIE. Due to the lack of a large dataset, transfer learning method with fine-tuning a pre-trained ResNet 50 is introduced. We randomly select 11 datasets from patients with normal neurology outcomes (n = 31) and patients with abnormal neurology outcomes (n = 11) at 24 months of age to avoid bias in classification due to any imbalance in the data. Then we develop a rule-based system to improve the classification performance, with an accuracy of 0.93 ± 0.09. We also compute heatmaps produced by the Grad-CAM technique to analyze which areas of SWI images contributed more to the classification patients with abnormal neurology outcome, such regions can interpret the relationship between the brain regions affected by hypoxic-ischaemic and neurodevelopmental outcomes of infants with HIE at the age of 2 years.
Hypoxic-ischaemic,, SWI image, heatmap, transfer learning, Transfer learning, Hypoxic-ischemic, Heatmap
1352-8661
227-239
Tang, Zhen
a8a50743-212f-4fb2-84f1-805f0758a83e
Mahmoodi, Sasan
91ca8da4-95dc-4c1e-ac0e-f2c08d6ac7cf
Darekar, Angela
327a5432-d7d2-4ce6-ab2b-0d5db86298c3
Vollmer, Brigitte
0a22038a-35cb-49b9-b343-4ec16e162be5
Tang, Zhen
a8a50743-212f-4fb2-84f1-805f0758a83e
Mahmoodi, Sasan
91ca8da4-95dc-4c1e-ac0e-f2c08d6ac7cf
Darekar, Angela
327a5432-d7d2-4ce6-ab2b-0d5db86298c3
Vollmer, Brigitte
0a22038a-35cb-49b9-b343-4ec16e162be5

Tang, Zhen, Mahmoodi, Sasan, Darekar, Angela and Vollmer, Brigitte (2024) Rule-based deep learning method for prognosis of neonatal hypoxic-ischaemic encephalopathy by using susceptibility weighted image analysis. Magnetic Resonance Materials in Physics, Biology and Medicine, 37 (2), 227-239. (doi:10.1007/s10334-023-01139-2).

Record type: Article

Abstract

Susceptibility weighted imaging (SWI) of neonatal hypoxic-ischaemic brain injury can provide assistance in the prognosis of neonatal hypoxic-ischaemic encephalopathy (HIE). We propose a convolutional neural network model to classify SWI images with HIE. Due to the lack of a large dataset, transfer learning method with fine-tuning a pre-trained ResNet 50 is introduced. We randomly select 11 datasets from patients with normal neurology outcomes (n = 31) and patients with abnormal neurology outcomes (n = 11) at 24 months of age to avoid bias in classification due to any imbalance in the data. Then we develop a rule-based system to improve the classification performance, with an accuracy of 0.93 ± 0.09. We also compute heatmaps produced by the Grad-CAM technique to analyze which areas of SWI images contributed more to the classification patients with abnormal neurology outcome, such regions can interpret the relationship between the brain regions affected by hypoxic-ischaemic and neurodevelopmental outcomes of infants with HIE at the age of 2 years.

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manuscript_Zhen_Sasan_2 - Accepted Manuscript
Restricted to Repository staff only until 11 December 2024.
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More information

Accepted/In Press date: 11 December 2023
Published date: April 2024
Additional Information: Publisher Copyright: © The Author(s), under exclusive licence to European Society for Magnetic Resonance in Medicine and Biology (ESMRMB) 2024.
Keywords: Hypoxic-ischaemic,, SWI image, heatmap, transfer learning, Transfer learning, Hypoxic-ischemic, Heatmap

Identifiers

Local EPrints ID: 485650
URI: http://eprints.soton.ac.uk/id/eprint/485650
ISSN: 1352-8661
PURE UUID: 4fb3473c-78fe-40bd-9e10-b6cc15842813

Catalogue record

Date deposited: 13 Dec 2023 17:37
Last modified: 03 May 2024 16:31

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Contributors

Author: Zhen Tang
Author: Sasan Mahmoodi
Author: Angela Darekar
Author: Brigitte Vollmer

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