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Integrated plasma proteomics identifies tuberculosis-specific diagnostic biomarkers

Integrated plasma proteomics identifies tuberculosis-specific diagnostic biomarkers
Integrated plasma proteomics identifies tuberculosis-specific diagnostic biomarkers
Background: novel biomarkers to identify infectious patients transmitting Mycobacterium tuberculosis are urgently needed to control the global tuberculosis (TB) pandemic. We hypothesized that proteins released into the plasma in active pulmonary TB are clinically useful biomarkers to distinguish TB cases from healthy individuals and patients with other respiratory infections.

Methods: we applied a highly sensitive non-depletion tandem mass spectrometry discovery approach to investigate plasma protein expression in pulmonary TB cases compared to healthy controls in South African and Peruvian cohorts. Bioinformatic analysis using linear modeling and network correlation analyses identified 118 differentially expressed proteins, significant through
3 complementary analytical pipelines. Candidate biomarkers were subsequently analyzed in 2 validation cohorts of differing ethnicity using antibody-based proximity extension assays.

Results: TB-specific host biomarkers were confirmed. A 6-protein diagnostic panel, comprising FETUB, FCGR3B, LRG1, SELL, CD14, and ADA2, differentiated patients with pulmonary TB from healthy controls and patients with other respiratory infections with high sensitivity and specificity in both cohorts.

Conclusion: this biomarker panel exceeds the World Health Organization Target Product Profile specificity criteria for a triage test for TB. The new biomarkers have potential for further development as near-patient TB screening assays, thereby helping to close the case-detection gap that fuels the global pandemic.
Tuberculosis, Proteomics, Diagostics, Biomarkers
2379-3708
Schiff, Hannah
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Walker, Naomi F.
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Ugarte-Gil, Cesar
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Tebruegge, Marc
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Garbis, Spiros D.
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Manousopoulou, Antigoni
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Mansour, Salah
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Wong, Pak Ho
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Rockett, Gabrielle
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Piazza, Paolo
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Niranjan, Mahesan
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Vallejo, Andres F.
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Woelk, Christopher H.
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Wilkinson, Robert J.
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Tezera, Liku B.
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Garay Baquero, Diana
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Elkington, Paul
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Schiff, Hannah
59bd19d1-4547-4807-941b-cc273f6ebf9b
Walker, Naomi F.
e586ffdf-ae4b-46fa-83a1-db72501d17c1
Ugarte-Gil, Cesar
705952c4-d412-4f77-9226-852f2973e117
Tebruegge, Marc
2c3dff22-0b5f-48a7-bb36-ce323705f74a
Garbis, Spiros D.
7067fd19-50c9-4d42-9611-f370289470bd
Manousopoulou, Antigoni
e8abef87-059e-4cd9-ac11-3968026a8421
Mansour, Salah
4aecba5a-8387-4f7b-b766-0a9c309ccb8b
Wong, Pak Ho
c4994dd0-47d1-450b-a9aa-f169d3ce5ae4
Rockett, Gabrielle
12f8648e-3380-4588-84a6-841ad7acdfc6
Piazza, Paolo
2658367e-6cb6-4067-ae48-5af5de6af3bd
Niranjan, Mahesan
5cbaeea8-7288-4b55-a89c-c43d212ddd4f
Vallejo, Andres F.
27bc0b94-0c40-4fd1-9533-7e267d588c0a
Woelk, Christopher H.
e15df2e6-9a33-4b61-ab72-92897caabe37
Wilkinson, Robert J.
efcf7079-ebfa-4270-b7a4-a578ffd91178
Tezera, Liku B.
c5598dbf-23a8-4934-96a4-7c783bf9e776
Garay Baquero, Diana
da9136fe-3d47-4d04-8ab3-96bfe17a773c
Elkington, Paul
60828c7c-3d32-47c9-9fcc-6c4c54c35a15

Schiff, Hannah, Walker, Naomi F., Ugarte-Gil, Cesar, Tebruegge, Marc, Garbis, Spiros D., Manousopoulou, Antigoni, Mansour, Salah, Wong, Pak Ho, Rockett, Gabrielle, Piazza, Paolo, Niranjan, Mahesan, Vallejo, Andres F., Woelk, Christopher H., Wilkinson, Robert J., Tezera, Liku B., Garay Baquero, Diana and Elkington, Paul (2024) Integrated plasma proteomics identifies tuberculosis-specific diagnostic biomarkers. JCI Insight. (doi:10.1172/jci.insight.173273).

Record type: Article

Abstract

Background: novel biomarkers to identify infectious patients transmitting Mycobacterium tuberculosis are urgently needed to control the global tuberculosis (TB) pandemic. We hypothesized that proteins released into the plasma in active pulmonary TB are clinically useful biomarkers to distinguish TB cases from healthy individuals and patients with other respiratory infections.

Methods: we applied a highly sensitive non-depletion tandem mass spectrometry discovery approach to investigate plasma protein expression in pulmonary TB cases compared to healthy controls in South African and Peruvian cohorts. Bioinformatic analysis using linear modeling and network correlation analyses identified 118 differentially expressed proteins, significant through
3 complementary analytical pipelines. Candidate biomarkers were subsequently analyzed in 2 validation cohorts of differing ethnicity using antibody-based proximity extension assays.

Results: TB-specific host biomarkers were confirmed. A 6-protein diagnostic panel, comprising FETUB, FCGR3B, LRG1, SELL, CD14, and ADA2, differentiated patients with pulmonary TB from healthy controls and patients with other respiratory infections with high sensitivity and specificity in both cohorts.

Conclusion: this biomarker panel exceeds the World Health Organization Target Product Profile specificity criteria for a triage test for TB. The new biomarkers have potential for further development as near-patient TB screening assays, thereby helping to close the case-detection gap that fuels the global pandemic.

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173273.1-20240326143808-covered-e0fd13ba177f913fd3156f593ead4cfd - Version of Record
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e-pub ahead of print date: 21 March 2024
Additional Information: For the purposes of open access, the authors have applied a CC-BY public copyright to any author-accepted manuscript arising from this submission.
Keywords: Tuberculosis, Proteomics, Diagostics, Biomarkers

Identifiers

Local EPrints ID: 488793
URI: http://eprints.soton.ac.uk/id/eprint/488793
ISSN: 2379-3708
PURE UUID: ba39856e-c42d-47aa-b59e-78f72b1a48af
ORCID for Hannah Schiff: ORCID iD orcid.org/0000-0002-0860-1818
ORCID for Spiros D. Garbis: ORCID iD orcid.org/0000-0002-1050-0805
ORCID for Salah Mansour: ORCID iD orcid.org/0000-0002-5982-734X
ORCID for Mahesan Niranjan: ORCID iD orcid.org/0000-0001-7021-140X
ORCID for Andres F. Vallejo: ORCID iD orcid.org/0000-0002-4688-0598
ORCID for Liku B. Tezera: ORCID iD orcid.org/0000-0002-7898-6709
ORCID for Diana Garay Baquero: ORCID iD orcid.org/0000-0002-9450-8504
ORCID for Paul Elkington: ORCID iD orcid.org/0000-0003-0390-0613

Catalogue record

Date deposited: 05 Apr 2024 16:43
Last modified: 10 Apr 2024 02:00

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Contributors

Author: Hannah Schiff ORCID iD
Author: Naomi F. Walker
Author: Cesar Ugarte-Gil
Author: Marc Tebruegge
Author: Spiros D. Garbis ORCID iD
Author: Antigoni Manousopoulou
Author: Salah Mansour ORCID iD
Author: Pak Ho Wong
Author: Gabrielle Rockett
Author: Paolo Piazza
Author: Mahesan Niranjan ORCID iD
Author: Andres F. Vallejo ORCID iD
Author: Christopher H. Woelk
Author: Robert J. Wilkinson
Author: Liku B. Tezera ORCID iD
Author: Diana Garay Baquero ORCID iD
Author: Paul Elkington ORCID iD

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