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AttU-NET: attention U-net for brain tumor segmentation

AttU-NET: attention U-net for brain tumor segmentation
AttU-NET: attention U-net for brain tumor segmentation

Tumor delineation is critical for the precise diagnosis and treatment of glioma patients. Since manual segmentation is time-consuming and tedious, automatic segmentation is desired. With the advent of convolution neural network (CNN), tremendous CNN models have been proposed for medical image segmentation. However, the small size of kernel limits the shape of the receptive view, omitting the global information. To utilize the intrinsic features of brain anatomical structure, we propose a modified U-Net with an attention block (AttU-Net) to tract the complementary information from the whole image. The proposed attention block can be easily added to any segmentation backbones, which improved the Dice score by 5%. We evaluated our approach on the dataset of BraTS 2021 challenge and achieved promising performance on this dataset. The Dice scores of enhancing tumor, tumor core, and whole tumor segmentation are 0.793, 0.819, and 0.879, respectively.

Attention map, Brain tumor, Multi-scale supervision
0302-9743
302-311
Springer Cham
Wang, Sihan
fd4f700b-a400-40c0-b34a-00d275fdd84d
Li, Lei
2da88502-0bd8-4e6b-8f7d-0c01a48b399e
Zhuang, Xiahai
c58e977b-e70e-4b37-9acd-b7f8070d98a8
Crimi, Alessandro
Bakas, Spyridon
Wang, Sihan
fd4f700b-a400-40c0-b34a-00d275fdd84d
Li, Lei
2da88502-0bd8-4e6b-8f7d-0c01a48b399e
Zhuang, Xiahai
c58e977b-e70e-4b37-9acd-b7f8070d98a8
Crimi, Alessandro
Bakas, Spyridon

Wang, Sihan, Li, Lei and Zhuang, Xiahai (2022) AttU-NET: attention U-net for brain tumor segmentation. Crimi, Alessandro and Bakas, Spyridon (eds.) In Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries: 7th International Workshop, BrainLes 2021, Held in Conjunction with MICCAI 2021, Virtual Event, September 27, 2021, Revised Selected Papers, Part II. vol. 12963, Springer Cham. pp. 302-311 . (doi:10.1007/978-3-031-09002-8_27).

Record type: Conference or Workshop Item (Paper)

Abstract

Tumor delineation is critical for the precise diagnosis and treatment of glioma patients. Since manual segmentation is time-consuming and tedious, automatic segmentation is desired. With the advent of convolution neural network (CNN), tremendous CNN models have been proposed for medical image segmentation. However, the small size of kernel limits the shape of the receptive view, omitting the global information. To utilize the intrinsic features of brain anatomical structure, we propose a modified U-Net with an attention block (AttU-Net) to tract the complementary information from the whole image. The proposed attention block can be easily added to any segmentation backbones, which improved the Dice score by 5%. We evaluated our approach on the dataset of BraTS 2021 challenge and achieved promising performance on this dataset. The Dice scores of enhancing tumor, tumor core, and whole tumor segmentation are 0.793, 0.819, and 0.879, respectively.

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More information

e-pub ahead of print date: 14 July 2022
Published date: 15 July 2022
Venue - Dates: 7th International Brain Lesion Workshop, BrainLes 2021, held in conjunction with the Medical Image Computing and Computer Assisted Intervention, MICCAI 2021, , Virtual, Online, 2021-09-27 - 2021-09-27
Keywords: Attention map, Brain tumor, Multi-scale supervision

Identifiers

Local EPrints ID: 488815
URI: http://eprints.soton.ac.uk/id/eprint/488815
ISSN: 0302-9743
PURE UUID: 6eda3428-e9c3-4618-8e4b-959913e7239f
ORCID for Lei Li: ORCID iD orcid.org/0000-0003-1281-6472

Catalogue record

Date deposited: 05 Apr 2024 16:45
Last modified: 10 Apr 2024 02:14

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Contributors

Author: Sihan Wang
Author: Lei Li ORCID iD
Author: Xiahai Zhuang
Editor: Alessandro Crimi
Editor: Spyridon Bakas

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