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A multi-task approach using positional information for ultrasound placenta segmentation

A multi-task approach using positional information for ultrasound placenta segmentation
A multi-task approach using positional information for ultrasound placenta segmentation

Automatic segmentation of the placenta in fetal ultrasound (US) is challenging due to its high variations in shape, position and appearance. Convolutional neural networks (CNN) are the state-of-the-art in medical image segmentation and have already been applied successfully to extract the placenta in US. However, the performance of CNNs depends highly on the availability of large training sets which also need to be representative for new unseen data. In this work, we propose to inform the network about the variability in the data distribution via an auxiliary task to improve performances for under representative training sets. The auxiliary task has two objectives: (i) enlarging of the training set with easily obtainable labels, and (ii) including more information about the variability of the data in the training process. In particular, we use transfer learning and multi-task learning to incorporate the placental position in a U-Net architecture. We test different models for the segmentation of anterior and posterior placentas in fetal US. Our results suggest that these placenta types represent different distributions. By including the position of the placenta as an auxiliary task, the segmentation accuracy for both anterior and posterior placentas is improved when the specific type of placenta is not included in the training set.

0302-9743
264-273
Springer Cham
Zimmer, Veronika A.
6191ba19-27ee-40f8-8d4a-bc80beca661e
Gomez, Alberto
53d1627b-986d-4926-8bb4-7491ff90b114
Skelton, Emily
25a81e7e-4d87-448e-bfb7-cc0abddfe8d4
Ghavami, Nooshin
ee3267b0-6e2d-433b-8925-b70d7933b7d1
Wright, Robert
8ceeb19f-432b-4b26-87a2-53837b9ed980
Li, Lei
2da88502-0bd8-4e6b-8f7d-0c01a48b399e
Matthew, Jacqueline
1426e4af-f74f-47e8-a0ea-e028271f86b2
Hajnal, Joseph V.
52425d1f-ac76-436e-906b-3590f9c03804
Schnabel, Julia A.
da581009-2173-416f-8d41-2b513288ee00
Hu, Yipeng
Licandro, Roxane
Noble, J. Alison
Hutter, Jana
Melbourne, Andrew
Aylward, Stephen
Abaci Turk, Esra
Torrents Barrena, Jordina
Torrents Barrena, Jordina
et al.
Zimmer, Veronika A.
6191ba19-27ee-40f8-8d4a-bc80beca661e
Gomez, Alberto
53d1627b-986d-4926-8bb4-7491ff90b114
Skelton, Emily
25a81e7e-4d87-448e-bfb7-cc0abddfe8d4
Ghavami, Nooshin
ee3267b0-6e2d-433b-8925-b70d7933b7d1
Wright, Robert
8ceeb19f-432b-4b26-87a2-53837b9ed980
Li, Lei
2da88502-0bd8-4e6b-8f7d-0c01a48b399e
Matthew, Jacqueline
1426e4af-f74f-47e8-a0ea-e028271f86b2
Hajnal, Joseph V.
52425d1f-ac76-436e-906b-3590f9c03804
Schnabel, Julia A.
da581009-2173-416f-8d41-2b513288ee00
Hu, Yipeng
Licandro, Roxane
Noble, J. Alison
Hutter, Jana
Melbourne, Andrew
Aylward, Stephen
Abaci Turk, Esra
Torrents Barrena, Jordina
Torrents Barrena, Jordina

Zimmer, Veronika A., Gomez, Alberto and Skelton, Emily , et al. (2020) A multi-task approach using positional information for ultrasound placenta segmentation. Hu, Yipeng, Licandro, Roxane, Noble, J. Alison, Hutter, Jana, Melbourne, Andrew, Aylward, Stephen, Abaci Turk, Esra, Torrents Barrena, Jordina and Torrents Barrena, Jordina (eds.) In Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis: First International Workshop, ASMUS 2020, and 5th International Workshop, PIPPI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4-8, 2020, Proceedings. vol. 12437, Springer Cham. pp. 264-273 . (doi:10.1007/978-3-030-60334-2_26).

Record type: Conference or Workshop Item (Paper)

Abstract

Automatic segmentation of the placenta in fetal ultrasound (US) is challenging due to its high variations in shape, position and appearance. Convolutional neural networks (CNN) are the state-of-the-art in medical image segmentation and have already been applied successfully to extract the placenta in US. However, the performance of CNNs depends highly on the availability of large training sets which also need to be representative for new unseen data. In this work, we propose to inform the network about the variability in the data distribution via an auxiliary task to improve performances for under representative training sets. The auxiliary task has two objectives: (i) enlarging of the training set with easily obtainable labels, and (ii) including more information about the variability of the data in the training process. In particular, we use transfer learning and multi-task learning to incorporate the placental position in a U-Net architecture. We test different models for the segmentation of anterior and posterior placentas in fetal US. Our results suggest that these placenta types represent different distributions. By including the position of the placenta as an auxiliary task, the segmentation accuracy for both anterior and posterior placentas is improved when the specific type of placenta is not included in the training set.

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More information

e-pub ahead of print date: 1 October 2020
Published date: 1 October 2020
Venue - Dates: 1st International Workshop on Advances in Simplifying Medical UltraSound, ASMUS 2020, and the 5th International Workshop on Perinatal, Preterm and Paediatric Image Analysis, PIPPI 2020, held in conjunction with the 23rd International Conference on Medical, , Lima, Peru, 2020-10-04 - 2020-10-08

Identifiers

Local EPrints ID: 488981
URI: http://eprints.soton.ac.uk/id/eprint/488981
ISSN: 0302-9743
PURE UUID: 9e4df3d6-4114-4898-81cd-a3c470833a94
ORCID for Lei Li: ORCID iD orcid.org/0000-0003-1281-6472

Catalogue record

Date deposited: 10 Apr 2024 16:37
Last modified: 06 Jun 2024 02:20

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Contributors

Author: Veronika A. Zimmer
Author: Alberto Gomez
Author: Emily Skelton
Author: Nooshin Ghavami
Author: Robert Wright
Author: Lei Li ORCID iD
Author: Jacqueline Matthew
Author: Joseph V. Hajnal
Author: Julia A. Schnabel
Editor: Yipeng Hu
Editor: Roxane Licandro
Editor: J. Alison Noble
Editor: Jana Hutter
Editor: Andrew Melbourne
Editor: Stephen Aylward
Editor: Esra Abaci Turk
Editor: Jordina Torrents Barrena
Editor: Jordina Torrents Barrena
Corporate Author: et al.

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