#!/bin/bash
#
#SBATCH --nodes=1
#SBATCH --mem=24G
#SBATCH --time=10:00:00
#SBATCH --job-name=raw_fastqc_loop
#SBATCH --chdir=/mainfs/scratch/kah1g14/
#SBATCH --mail-type=all
#SBATCH --mail-user=kah1g14@soton.ac.uk

module load fastqc/0.11.9

for i in /mainfs/home/kah1g14/raw_reads/*.fastq

do fastqc $i -o /mainfs/home/kah1g14/raw_fastqc

done




