#Prior to variant calling
#Download and unpack freebayes

wget https://github.com/freebayes/freebayes/releases/download/v1.3.6/freebayes-1.3.6-linux-amd64-static.gz

#Either
##gzip -d freebayes-1.3.6-linux-amd64-static.gz

#Or
gunzip freebayes-1.3.6-linux-amd64-static.gz

#Make the freebayes file executable
chmod +x /mainfs/scratch/kah1g14/variantcalling_packages/freebayes-1.3.6-linux-amd64-static


#Download and unpack seqkit

wget https://github.com/shenwei356/seqkit/releases/download/v2.4.0/seqkit_linux_amd64.tar.gz

tar -xvf seqkit_linux_amd64.tar.gz

