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Genome-wide generation and systematic phenotyping of knockout mice reveals new roles for many genes

Genome-wide generation and systematic phenotyping of knockout mice reveals new roles for many genes
Genome-wide generation and systematic phenotyping of knockout mice reveals new roles for many genes

Mutations in whole organisms are powerful ways of interrogating gene function in a realistic context. We describe a program, the Sanger Institute Mouse Genetics Project, that provides a step toward the aim of knocking out all genes and screening each line for a broad range of traits. We found that hitherto unpublished genes were as likely to reveal phenotypes as known genes, suggesting that novel genes represent a rich resource for investigating the molecular basis of disease. We found many unexpected phenotypes detected only because we screened for them, emphasizing the value of screening all mutants for a wide range of traits. Haploinsufficiency and pleiotropy were both surprisingly common. Forty-two percent of genes were essential for viability, and these were less likely to have a paralog and more likely to contribute to a protein complex than other genes. Phenotypic data and more than 900 mutants are openly available for further analysis. PAPERCLIP:

Animals, Disease/genetics, Disease Models, Animal, Female, Genes, Essential, Genetic Techniques, Genome-Wide Association Study, Male, Mice, Mice, Knockout, Phenotype
0092-8674
452-64
White, Jacqueline K.
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Gerdin, Anna-Karin
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Karp, Natasha A.
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Ryder, Ed
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Buljan, Marija
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Bussell, James N.
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Salisbury, Jennifer
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Clare, Simon
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Ingham, Neil J.
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Podrini, Christine
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Houghton, Richard
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Estabel, Jeanne
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Bottomley, Joanna R.
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Melvin, David G.
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Sunter, David
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Adams, Niels C.
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Tannahill, David
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Logan, Darren W.
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Macarthur, Daniel G.
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Flint, Jonathan
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Mahajan, Vinit B.
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Tsang, Stephen H.
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Smyth, Ian
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Watt, Fiona M.
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Skarnes, William C.
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Dougan, Gordon
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Adams, David J.
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Ramirez-Solis, Ramiro
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Bradley, Allan
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Steel, Karen P.
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Sanger Institute Mouse Genetics Project
White, Jacqueline K.
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Gerdin, Anna-Karin
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Karp, Natasha A.
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Ryder, Ed
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Buljan, Marija
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Bussell, James N.
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Salisbury, Jennifer
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Clare, Simon
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Ingham, Neil J.
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Podrini, Christine
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Houghton, Richard
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Estabel, Jeanne
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Bottomley, Joanna R.
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Melvin, David G.
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Sunter, David
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Adams, Niels C.
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Tannahill, David
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Logan, Darren W.
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Macarthur, Daniel G.
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Flint, Jonathan
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Mahajan, Vinit B.
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Tsang, Stephen H.
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Smyth, Ian
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Watt, Fiona M.
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Skarnes, William C.
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Dougan, Gordon
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Adams, David J.
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Ramirez-Solis, Ramiro
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Bradley, Allan
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Steel, Karen P.
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White, Jacqueline K., Gerdin, Anna-Karin, Karp, Natasha A., Ryder, Ed, Buljan, Marija, Bussell, James N., Salisbury, Jennifer, Clare, Simon, Ingham, Neil J., Podrini, Christine, Houghton, Richard, Estabel, Jeanne, Bottomley, Joanna R., Melvin, David G., Sunter, David and Adams, Niels C. , Sanger Institute Mouse Genetics Project (2013) Genome-wide generation and systematic phenotyping of knockout mice reveals new roles for many genes. Cell, 154 (2), 452-64. (doi:10.1016/j.cell.2013.06.022).

Record type: Article

Abstract

Mutations in whole organisms are powerful ways of interrogating gene function in a realistic context. We describe a program, the Sanger Institute Mouse Genetics Project, that provides a step toward the aim of knocking out all genes and screening each line for a broad range of traits. We found that hitherto unpublished genes were as likely to reveal phenotypes as known genes, suggesting that novel genes represent a rich resource for investigating the molecular basis of disease. We found many unexpected phenotypes detected only because we screened for them, emphasizing the value of screening all mutants for a wide range of traits. Haploinsufficiency and pleiotropy were both surprisingly common. Forty-two percent of genes were essential for viability, and these were less likely to have a paralog and more likely to contribute to a protein complex than other genes. Phenotypic data and more than 900 mutants are openly available for further analysis. PAPERCLIP:

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More information

Accepted/In Press date: 17 June 2013
e-pub ahead of print date: 18 July 2013
Keywords: Animals, Disease/genetics, Disease Models, Animal, Female, Genes, Essential, Genetic Techniques, Genome-Wide Association Study, Male, Mice, Mice, Knockout, Phenotype

Identifiers

Local EPrints ID: 490953
URI: http://eprints.soton.ac.uk/id/eprint/490953
ISSN: 0092-8674
PURE UUID: 807edf3a-30ac-43fc-b020-c409784974f6

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Date deposited: 10 Jun 2024 16:42
Last modified: 10 Jun 2024 16:46

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Contributors

Author: Jacqueline K. White
Author: Anna-Karin Gerdin
Author: Natasha A. Karp
Author: Ed Ryder
Author: Marija Buljan
Author: James N. Bussell
Author: Jennifer Salisbury
Author: Simon Clare
Author: Neil J. Ingham
Author: Christine Podrini
Author: Richard Houghton
Author: Jeanne Estabel
Author: Joanna R. Bottomley
Author: David G. Melvin
Author: David Sunter
Author: Niels C. Adams
Author: David Tannahill
Author: Darren W. Logan
Author: Daniel G. Macarthur
Author: Jonathan Flint
Author: Vinit B. Mahajan
Author: Stephen H. Tsang
Author: Ian Smyth
Author: Fiona M. Watt
Author: William C. Skarnes
Author: Gordon Dougan
Author: David J. Adams
Author: Ramiro Ramirez-Solis
Author: Allan Bradley
Author: Karen P. Steel
Corporate Author: Sanger Institute Mouse Genetics Project

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