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Associations between cuprotosis-related genes and the spectrum of metabolic dysfunction-associated fatty liver disease: an exploratory study

Associations between cuprotosis-related genes and the spectrum of metabolic dysfunction-associated fatty liver disease: an exploratory study
Associations between cuprotosis-related genes and the spectrum of metabolic dysfunction-associated fatty liver disease: an exploratory study

Aims: To explore the associations between cuprotosis-related genes (CRGs) across different stages of liver disease in metabolic dysfunction-associated fatty liver disease (MAFLD), including hepatocellular carcinoma (HCC). Materials and Methods: We analysed several bulk RNA sequencing datasets from patients with MAFLD (n = 331) and MAFLD-related HCC (n = 271) and two MAFLD single-cell RNA sequencing datasets. To investigate the associations between CRGs and MAFLD, we performed differential correlation, logistic regression and functional enrichment analyses. We also validated the findings in an independent Wenzhou PERSONS cohort of MAFLD patients (n = 656) used for a genome-wide association study (GWAS). Results: GLS, GCSH and ATP7B genes showed significant differences across the MAFLD spectrum and were significantly associated with liver fibrosis stages. GLS was closely associated with fibrosis stages in patients with MAFLD and those with MAFLD-related HCC. GLS is predominantly expressed in monocytes and T cells in MAFLD. During the progression of metabolic dysfunction-associated fatty liver to metabolic-associated steatohepatitis, GLS expression in T cells decreased. GWAS revealed that multiple single nucleotide polymorphisms in GLS were associated with clinical indicators of MAFLD. Conclusions: GLS may contribute to liver inflammation and fibrosis in MAFLD mainly through cuprotosis and T-cell activation, promoting the progression of MAFLD to HCC. These findings suggest that cuprotosis may play a role in MAFLD progression, potentially providing new insights into MAFLD pathogenesis.

bulk RNA-seq, cuprotosis, genome-wide association study, hepatocellular carcinoma, metabolic dysfunction-associated fatty liver disease, sing-cell RNA-seq
1462-8902
5757-5775
Yuan, Hai-Yang
602a757a-4e33-43cd-8513-bc4d57d1d38a
Liu, Wen-Yue
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Feng, Gong
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Chen, Sui-Dan
ecfaadc5-e18c-42ce-b37a-443eb4178605
Jin, Xin-Zhe
03447776-fe2a-4f8e-911a-d3278d7e1de5
Chen, Li-Li
c8c50ea1-7272-4ae8-bfc7-b30c4470333f
Song, Zi-Jun
fa117699-64d7-4ff8-906c-00cb318d69ae
Li, Ke
4e87f63b-7be6-44ab-a00e-a156264a15a0
Byrne, Chrisopher D.
1370b997-cead-4229-83a7-53301ed2a43c
Targher, Giovanni
e4aacc2c-a1dc-41b5-b247-7f2e0cec03e3
Tian, Na
7b44eb6a-cd42-4a8d-81a9-1536cf39d7c8
Li, Gang
e46a9598-411f-45c4-ba93-06a6a44db968
Zhang, Xin-Lei
a9d1fbcf-6acc-4b53-8d76-774535f82059
George, Jacob
5c175c9c-42e4-437c-9ecd-43926d4c4063
Zhou, Meng
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Wang, Fudi
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Zheng, Ming-Hua
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Yuan, Hai-Yang
602a757a-4e33-43cd-8513-bc4d57d1d38a
Liu, Wen-Yue
f11c9862-2cc9-4a41-a430-f0978d6c45cc
Feng, Gong
1c3aa65d-9a69-48b1-8c4b-c445a209fcd7
Chen, Sui-Dan
ecfaadc5-e18c-42ce-b37a-443eb4178605
Jin, Xin-Zhe
03447776-fe2a-4f8e-911a-d3278d7e1de5
Chen, Li-Li
c8c50ea1-7272-4ae8-bfc7-b30c4470333f
Song, Zi-Jun
fa117699-64d7-4ff8-906c-00cb318d69ae
Li, Ke
4e87f63b-7be6-44ab-a00e-a156264a15a0
Byrne, Chrisopher D.
1370b997-cead-4229-83a7-53301ed2a43c
Targher, Giovanni
e4aacc2c-a1dc-41b5-b247-7f2e0cec03e3
Tian, Na
7b44eb6a-cd42-4a8d-81a9-1536cf39d7c8
Li, Gang
e46a9598-411f-45c4-ba93-06a6a44db968
Zhang, Xin-Lei
a9d1fbcf-6acc-4b53-8d76-774535f82059
George, Jacob
5c175c9c-42e4-437c-9ecd-43926d4c4063
Zhou, Meng
b5f73e80-df4a-4426-a13c-e5af7be9aba3
Wang, Fudi
2efaece1-0ae5-4984-a47b-5efb03d99813
Zheng, Ming-Hua
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Yuan, Hai-Yang, Liu, Wen-Yue, Feng, Gong, Chen, Sui-Dan, Jin, Xin-Zhe, Chen, Li-Li, Song, Zi-Jun, Li, Ke, Byrne, Chrisopher D., Targher, Giovanni, Tian, Na, Li, Gang, Zhang, Xin-Lei, George, Jacob, Zhou, Meng, Wang, Fudi and Zheng, Ming-Hua (2024) Associations between cuprotosis-related genes and the spectrum of metabolic dysfunction-associated fatty liver disease: an exploratory study. Diabetes, Obesity and Metabolism, 26 (12), 5757-5775. (doi:10.1111/dom.15946).

Record type: Article

Abstract

Aims: To explore the associations between cuprotosis-related genes (CRGs) across different stages of liver disease in metabolic dysfunction-associated fatty liver disease (MAFLD), including hepatocellular carcinoma (HCC). Materials and Methods: We analysed several bulk RNA sequencing datasets from patients with MAFLD (n = 331) and MAFLD-related HCC (n = 271) and two MAFLD single-cell RNA sequencing datasets. To investigate the associations between CRGs and MAFLD, we performed differential correlation, logistic regression and functional enrichment analyses. We also validated the findings in an independent Wenzhou PERSONS cohort of MAFLD patients (n = 656) used for a genome-wide association study (GWAS). Results: GLS, GCSH and ATP7B genes showed significant differences across the MAFLD spectrum and were significantly associated with liver fibrosis stages. GLS was closely associated with fibrosis stages in patients with MAFLD and those with MAFLD-related HCC. GLS is predominantly expressed in monocytes and T cells in MAFLD. During the progression of metabolic dysfunction-associated fatty liver to metabolic-associated steatohepatitis, GLS expression in T cells decreased. GWAS revealed that multiple single nucleotide polymorphisms in GLS were associated with clinical indicators of MAFLD. Conclusions: GLS may contribute to liver inflammation and fibrosis in MAFLD mainly through cuprotosis and T-cell activation, promoting the progression of MAFLD to HCC. These findings suggest that cuprotosis may play a role in MAFLD progression, potentially providing new insights into MAFLD pathogenesis.

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Accepted/In Press date: 30 August 2024
e-pub ahead of print date: 16 September 2024
Published date: 16 September 2024
Additional Information: Publisher Copyright: © 2024 John Wiley & Sons Ltd.
Keywords: bulk RNA-seq, cuprotosis, genome-wide association study, hepatocellular carcinoma, metabolic dysfunction-associated fatty liver disease, sing-cell RNA-seq

Identifiers

Local EPrints ID: 493902
URI: http://eprints.soton.ac.uk/id/eprint/493902
ISSN: 1462-8902
PURE UUID: 896930f7-27df-4c8d-a740-d83bc2f79245
ORCID for Chrisopher D. Byrne: ORCID iD orcid.org/0000-0001-6322-7753

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Date deposited: 17 Sep 2024 16:39
Last modified: 12 Nov 2024 02:37

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Contributors

Author: Hai-Yang Yuan
Author: Wen-Yue Liu
Author: Gong Feng
Author: Sui-Dan Chen
Author: Xin-Zhe Jin
Author: Li-Li Chen
Author: Zi-Jun Song
Author: Ke Li
Author: Giovanni Targher
Author: Na Tian
Author: Gang Li
Author: Xin-Lei Zhang
Author: Jacob George
Author: Meng Zhou
Author: Fudi Wang
Author: Ming-Hua Zheng

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