The University of Southampton
University of Southampton Institutional Repository

Genome-wide association analysis in humans links nucleotide metabolism to leukocyte telomere length

Genome-wide association analysis in humans links nucleotide metabolism to leukocyte telomere length
Genome-wide association analysis in humans links nucleotide metabolism to leukocyte telomere length
Leukocyte telomere length (LTL) is a heritable biomarker of genomic aging. In this study, we perform a genome-wide meta-analysis of LTL by pooling densely genotyped and imputed association results across large-scale European-descent studies including up to 78,592 individuals. We identify 49 genomic regions at a false dicovery rate (FDR) < 0.05 threshold and prioritize genes at 31, with five highlighting nucleotide metabolism as an important regulator of LTL. We report six genome-wide significant loci in or near SENP7, MOB1B, CARMIL1, PRRC2A, TERF2, and RFWD3, and our results support recently identified PARP1, POT1, ATM, and MPHOSPH6 loci. Phenome-wide analyses in >350,000 UK Biobank participants suggest that genetically shorter telomere length increases the risk of hypothyroidism and decreases the risk of thyroid cancer, lymphoma, and a range of proliferative conditions. Our results replicate previously reported associations with increased risk of coronary artery disease and lower risk for multiple cancer types. Our findings substantially expand current knowledge on genes that regulate LTL and their impact on human health and disease.
0002-9297
389 - 404
Li, C.
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Stoma, S.
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Warner, S.
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Butterworth, A.S.
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Li, C., Stoma, S., Lotta, L.A., Warner, S., Albrecht, E., Allione, A., Arp, P.P., Broer, L., Buxton, J.L., Couto Alves, Alexessander, Deelen, J., Fedko, I.O., Gordon, S.D., Jiang, T., Karlsson, R., Kerrison, N., Loe, T.K., Mangino, M., Milaneschi, Y., Miraglio, B., Pervjakova, N., Russo, A., Surakka, I., van der Spek, A., Verhoeven, J.E., Amin, N., Beekman, M., Blakemore, A.I., Canzian, F., Hamby, S.E., Hottenga, J.-J., Jones, P.D., Jousilahti, P., Mägi, R., Medland, S.E., Montgomery, G.W., Nyholt, D.R., Perola, M., Pietiläinen, K.H., Salomaa, V., Sillanpää, E., Suchiman, H.E., van Heemst, D., Willemsen, G., Agudo, A., Boeing, H., Boomsma, D.I., Chirlaque, M.-D., Fagherazzi, G., Ferrari, P., Franks, P., Gieger, C., Eriksson, J.G., Gunter, M., Hägg, S., Hovatta, I., Imaz, L., Kaprio, J., Kaaks, R., Key, T., Krogh, V., Martin, N.G., Melander, O., Metspalu, A., Moreno, C., Onland-Moret, N.C., Nilsson, P., Ong, K.K., Overvad, K., Palli, D., Panico, S., Pedersen, N.L., Penninx, B.W.J.H., Quirós, J.R., Jarvelin, M.R., Rodríguez-Barranco, M., Scott, R.A., Severi, G., Slagboom, P.E., Spector, T.D., Tjonneland, A., Trichopoulou, A., Tumino, R., Uitterlinden, A.G., van der Schouw, Y.T., van Duijn, C.M., Weiderpass, E., Denchi, E.L., Matullo, G., Butterworth, A.S., Danesh, J., Samani, N.J., Wareham, N.J., Nelson, C.P., Langenberg, C. and Codd, V. (2020) Genome-wide association analysis in humans links nucleotide metabolism to leukocyte telomere length. American Journal of Human Genetics, 106 (3), 389 - 404. (doi:10.1016/j.ajhg.2020.02.006).

Record type: Article

Abstract

Leukocyte telomere length (LTL) is a heritable biomarker of genomic aging. In this study, we perform a genome-wide meta-analysis of LTL by pooling densely genotyped and imputed association results across large-scale European-descent studies including up to 78,592 individuals. We identify 49 genomic regions at a false dicovery rate (FDR) < 0.05 threshold and prioritize genes at 31, with five highlighting nucleotide metabolism as an important regulator of LTL. We report six genome-wide significant loci in or near SENP7, MOB1B, CARMIL1, PRRC2A, TERF2, and RFWD3, and our results support recently identified PARP1, POT1, ATM, and MPHOSPH6 loci. Phenome-wide analyses in >350,000 UK Biobank participants suggest that genetically shorter telomere length increases the risk of hypothyroidism and decreases the risk of thyroid cancer, lymphoma, and a range of proliferative conditions. Our results replicate previously reported associations with increased risk of coronary artery disease and lower risk for multiple cancer types. Our findings substantially expand current knowledge on genes that regulate LTL and their impact on human health and disease.

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e-pub ahead of print date: 5 March 2020

Identifiers

Local EPrints ID: 494834
URI: http://eprints.soton.ac.uk/id/eprint/494834
ISSN: 0002-9297
PURE UUID: 5995177f-3a54-4f2b-af0f-11a013b4edf1
ORCID for Alexessander Couto Alves: ORCID iD orcid.org/0000-0001-8519-7356

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Date deposited: 16 Oct 2024 16:45
Last modified: 19 Oct 2024 02:14

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Contributors

Author: C. Li
Author: S. Stoma
Author: L.A. Lotta
Author: S. Warner
Author: E. Albrecht
Author: A. Allione
Author: P.P. Arp
Author: L. Broer
Author: J.L. Buxton
Author: Alexessander Couto Alves ORCID iD
Author: J. Deelen
Author: I.O. Fedko
Author: S.D. Gordon
Author: T. Jiang
Author: R. Karlsson
Author: N. Kerrison
Author: T.K. Loe
Author: M. Mangino
Author: Y. Milaneschi
Author: B. Miraglio
Author: N. Pervjakova
Author: A. Russo
Author: I. Surakka
Author: A. van der Spek
Author: J.E. Verhoeven
Author: N. Amin
Author: M. Beekman
Author: A.I. Blakemore
Author: F. Canzian
Author: S.E. Hamby
Author: J.-J. Hottenga
Author: P.D. Jones
Author: P. Jousilahti
Author: R. Mägi
Author: S.E. Medland
Author: G.W. Montgomery
Author: D.R. Nyholt
Author: M. Perola
Author: K.H. Pietiläinen
Author: V. Salomaa
Author: E. Sillanpää
Author: H.E. Suchiman
Author: D. van Heemst
Author: G. Willemsen
Author: A. Agudo
Author: H. Boeing
Author: D.I. Boomsma
Author: M.-D. Chirlaque
Author: G. Fagherazzi
Author: P. Ferrari
Author: P. Franks
Author: C. Gieger
Author: J.G. Eriksson
Author: M. Gunter
Author: S. Hägg
Author: I. Hovatta
Author: L. Imaz
Author: J. Kaprio
Author: R. Kaaks
Author: T. Key
Author: V. Krogh
Author: N.G. Martin
Author: O. Melander
Author: A. Metspalu
Author: C. Moreno
Author: N.C. Onland-Moret
Author: P. Nilsson
Author: K.K. Ong
Author: K. Overvad
Author: D. Palli
Author: S. Panico
Author: N.L. Pedersen
Author: B.W.J.H. Penninx
Author: J.R. Quirós
Author: M.R. Jarvelin
Author: M. Rodríguez-Barranco
Author: R.A. Scott
Author: G. Severi
Author: P.E. Slagboom
Author: T.D. Spector
Author: A. Tjonneland
Author: A. Trichopoulou
Author: R. Tumino
Author: A.G. Uitterlinden
Author: Y.T. van der Schouw
Author: C.M. van Duijn
Author: E. Weiderpass
Author: E.L. Denchi
Author: G. Matullo
Author: A.S. Butterworth
Author: J. Danesh
Author: N.J. Samani
Author: N.J. Wareham
Author: C.P. Nelson
Author: C. Langenberg
Author: V. Codd

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