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Forecasting disease progression with parallel hyperplanes in longitudinal retinal OCT

Forecasting disease progression with parallel hyperplanes in longitudinal retinal OCT
Forecasting disease progression with parallel hyperplanes in longitudinal retinal OCT
Predicting future disease progression risk from medical images is challenging due to patient heterogeneity, and subtle or unknown imaging biomarkers. Moreover, deep learning (DL) methods for survival analysis are susceptible to image domain shifts across scanners. We tackle these issues in the task of predicting late dry Age-related Macular Degeneration (dAMD) onset from retinal OCT scans. We propose a novel DL method for survival prediction to jointly predict from the current scan a risk score, inversely related to time-to-conversion, and the probability of conversion within a time interval t. It uses a family of parallel hyperplanes generated by parameterizing the bias term as a function of t. In addition, we develop unsupervised losses based on intra-subject image pairs to ensure that risk scores increase over time and that future conversion predictions are consistent with AMD stage prediction using actual scans of future visits. Such losses enable data-efficient fine-tuning of the trained model on new unlabeled datasets acquired with a different scanner. Extensive evaluation on two large datasets acquired with different scanners resulted in a mean AUROCs of 0.82 for Dataset-1 and 0.83 for Dataset-2, across prediction intervals of 6,12 and 24 months.
273-283
Springer Cham
Chakravarty, Arunava
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Emre, Taha
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Lachinov, Dmitrii
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Rivail, Antoine
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Scholl, Hendrik
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Fritsche, Lars
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Sivaprasad, Sobha
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Rueckert, Daniel
3c5b51eb-7e44-4a00-ba79-cafb7ab3d970
Lotery, Andrew
5ecc2d2d-d0b4-468f-ad2c-df7156f8e514
Schmidt-Erfurth, Ursula
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Bogunovic, Hrvoje
d94f0d97-5a27-44d7-912d-9e043c2d449b
Linguraru, M.G.
Dou, Q.
Feragen, A.
Giannarou, S.
Glocker, B.
Lekadir, K.
Schnabel, Julia A.
Chakravarty, Arunava
ac32f2a7-7966-49ba-8aeb-e7c9d7a3e8db
Emre, Taha
9467dac7-00e8-411c-8a6c-4e1a06f6cd89
Lachinov, Dmitrii
519aaf70-58fc-4d0d-b55c-39aa41371ee4
Rivail, Antoine
c9b54ca2-02dc-40aa-8b8e-144f21fdf7a3
Scholl, Hendrik
50054998-4ce6-4bbb-9ff5-508566921522
Fritsche, Lars
1546fa08-b16a-4e41-aab3-df1858f36911
Sivaprasad, Sobha
7cd590d6-18f0-4ae1-8ace-4b35833c2f03
Rueckert, Daniel
3c5b51eb-7e44-4a00-ba79-cafb7ab3d970
Lotery, Andrew
5ecc2d2d-d0b4-468f-ad2c-df7156f8e514
Schmidt-Erfurth, Ursula
af993078-6680-4d2a-bc50-ebf6abc3857f
Bogunovic, Hrvoje
d94f0d97-5a27-44d7-912d-9e043c2d449b
Linguraru, M.G.
Dou, Q.
Feragen, A.
Giannarou, S.
Glocker, B.
Lekadir, K.
Schnabel, Julia A.

Chakravarty, Arunava, Emre, Taha, Lachinov, Dmitrii, Rivail, Antoine, Scholl, Hendrik, Fritsche, Lars, Sivaprasad, Sobha, Rueckert, Daniel, Lotery, Andrew, Schmidt-Erfurth, Ursula and Bogunovic, Hrvoje (2024) Forecasting disease progression with parallel hyperplanes in longitudinal retinal OCT. Linguraru, M.G., Dou, Q., Feragen, A., Giannarou, S., Glocker, B., Lekadir, K. and Schnabel, Julia A. (eds.) In Medical Image Computing and Computer Assisted Intervention – MICCAI 2024. vol. 15005, Springer Cham. pp. 273-283 . (doi:10.1007/978-3-031-72086-4_26).

Record type: Conference or Workshop Item (Paper)

Abstract

Predicting future disease progression risk from medical images is challenging due to patient heterogeneity, and subtle or unknown imaging biomarkers. Moreover, deep learning (DL) methods for survival analysis are susceptible to image domain shifts across scanners. We tackle these issues in the task of predicting late dry Age-related Macular Degeneration (dAMD) onset from retinal OCT scans. We propose a novel DL method for survival prediction to jointly predict from the current scan a risk score, inversely related to time-to-conversion, and the probability of conversion within a time interval t. It uses a family of parallel hyperplanes generated by parameterizing the bias term as a function of t. In addition, we develop unsupervised losses based on intra-subject image pairs to ensure that risk scores increase over time and that future conversion predictions are consistent with AMD stage prediction using actual scans of future visits. Such losses enable data-efficient fine-tuning of the trained model on new unlabeled datasets acquired with a different scanner. Extensive evaluation on two large datasets acquired with different scanners resulted in a mean AUROCs of 0.82 for Dataset-1 and 0.83 for Dataset-2, across prediction intervals of 6,12 and 24 months.

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FORECASTING DISEASE PROGRESSION WITH PARALLEL - Accepted Manuscript
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More information

e-pub ahead of print date: 4 October 2024
Published date: 4 October 2024
Venue - Dates: 27th Medical Image Computing and Computer Assisted Intervention 2024 MICCAI, Morocco, 2024-10-06 - 2024-10-10

Identifiers

Local EPrints ID: 496320
URI: http://eprints.soton.ac.uk/id/eprint/496320
PURE UUID: d7b1a60b-05f9-4ebc-8937-9825dcd41419
ORCID for Andrew Lotery: ORCID iD orcid.org/0000-0001-5541-4305

Catalogue record

Date deposited: 11 Dec 2024 18:04
Last modified: 08 Apr 2025 01:38

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Contributors

Author: Arunava Chakravarty
Author: Taha Emre
Author: Dmitrii Lachinov
Author: Antoine Rivail
Author: Hendrik Scholl
Author: Lars Fritsche
Author: Sobha Sivaprasad
Author: Daniel Rueckert
Author: Andrew Lotery ORCID iD
Author: Ursula Schmidt-Erfurth
Author: Hrvoje Bogunovic
Editor: M.G. Linguraru
Editor: Q. Dou
Editor: A. Feragen
Editor: S. Giannarou
Editor: B. Glocker
Editor: K. Lekadir
Editor: Julia A. Schnabel

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