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A diatom extension to the cGEnIE Earth system model – EcoGEnIE 1.1

A diatom extension to the cGEnIE Earth system model – EcoGEnIE 1.1
A diatom extension to the cGEnIE Earth system model – EcoGEnIE 1.1
We extend the ecological component (ECOGEM) of the carbon-centric Grid-Enabled Integrated Earth system model (cGEnIE) to include a diatom functional group. ECOGEM represents plankton community dynamics via a spectrum of ecophysiological traits originally based on size and plankton food web (phyto- and zooplankton; EcoGEnIE 1.0), which we developed here to account for a diatom functional group (EcoGEnIE 1.1). We tuned EcoGEnIE 1.1, exploring a range of ecophysiological parameter values specific to phytoplankton, including diatom growth and survival (18 parameters over 550 runs) to achieve best fits to observations of diatom biogeography and size class distribution as well as to global ocean nutrient and dissolved oxygen distributions. This, in conjunction with a previously developed representation of opal dissolution and an updated representation of the ocean iron cycle in the water column, resulted in an improved distribution of dissolved oxygen in the water column relative to the previous EcoGEnIE 1.0, with global export production (7.4 Gt C yr−1) now closer to previous estimates. Simulated diatom biogeography is characterised by larger size classes dominating at high latitudes, notably in the Southern Ocean, and smaller size classes dominating at lower latitudes. Overall, diatom biological productivity accounts for ∼20 % of global carbon biomass in the model, with diatoms outcompeting other phytoplankton functional groups when dissolved silica is available due to their faster maximum photosynthetic rates and reduced palatability to grazers. Adding a diatom functional group provides the cGEnIE Earth system model with an extended capability to explore ecological dynamics and their influence on ocean biogeochemistry.
1991-9603
1729-1748
Naidoo-Bagwell, Aaron A.
99ea1515-9789-4c4e-b1e1-1064753b4c17
Monteiro, Fanny M.
26ef54a5-2273-484d-88f9-f710e4f147a3
Hendry, Katharine R.
886d0da8-ae2d-4fa7-8e83-e850a6623392
Burgan, Scott
dac9cb3f-89c6-44e1-bb7f-80d79f8fbfb3
Wilson, Jamie D.
f20a1f4b-d3c5-405b-9174-49f3b7894744
Ward, Ben A.
9063af30-e344-4626-9470-8db7c1543d05
Ridgwell, Andy
769cea5c-e033-456a-8b53-51dfa307dc35
Conley, Daniel J.
6db4e591-fe41-4198-8e85-e9d81c7c18b6
Naidoo-Bagwell, Aaron A.
99ea1515-9789-4c4e-b1e1-1064753b4c17
Monteiro, Fanny M.
26ef54a5-2273-484d-88f9-f710e4f147a3
Hendry, Katharine R.
886d0da8-ae2d-4fa7-8e83-e850a6623392
Burgan, Scott
dac9cb3f-89c6-44e1-bb7f-80d79f8fbfb3
Wilson, Jamie D.
f20a1f4b-d3c5-405b-9174-49f3b7894744
Ward, Ben A.
9063af30-e344-4626-9470-8db7c1543d05
Ridgwell, Andy
769cea5c-e033-456a-8b53-51dfa307dc35
Conley, Daniel J.
6db4e591-fe41-4198-8e85-e9d81c7c18b6

Naidoo-Bagwell, Aaron A., Monteiro, Fanny M., Hendry, Katharine R., Burgan, Scott, Wilson, Jamie D., Ward, Ben A., Ridgwell, Andy and Conley, Daniel J. (2024) A diatom extension to the cGEnIE Earth system model – EcoGEnIE 1.1. Geoscientific Model Development, 17 (4), 1729-1748. (doi:10.5194/gmd-17-1729-2024).

Record type: Article

Abstract

We extend the ecological component (ECOGEM) of the carbon-centric Grid-Enabled Integrated Earth system model (cGEnIE) to include a diatom functional group. ECOGEM represents plankton community dynamics via a spectrum of ecophysiological traits originally based on size and plankton food web (phyto- and zooplankton; EcoGEnIE 1.0), which we developed here to account for a diatom functional group (EcoGEnIE 1.1). We tuned EcoGEnIE 1.1, exploring a range of ecophysiological parameter values specific to phytoplankton, including diatom growth and survival (18 parameters over 550 runs) to achieve best fits to observations of diatom biogeography and size class distribution as well as to global ocean nutrient and dissolved oxygen distributions. This, in conjunction with a previously developed representation of opal dissolution and an updated representation of the ocean iron cycle in the water column, resulted in an improved distribution of dissolved oxygen in the water column relative to the previous EcoGEnIE 1.0, with global export production (7.4 Gt C yr−1) now closer to previous estimates. Simulated diatom biogeography is characterised by larger size classes dominating at high latitudes, notably in the Southern Ocean, and smaller size classes dominating at lower latitudes. Overall, diatom biological productivity accounts for ∼20 % of global carbon biomass in the model, with diatoms outcompeting other phytoplankton functional groups when dissolved silica is available due to their faster maximum photosynthetic rates and reduced palatability to grazers. Adding a diatom functional group provides the cGEnIE Earth system model with an extended capability to explore ecological dynamics and their influence on ocean biogeochemistry.

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Accepted/In Press date: 11 January 2024
Published date: 27 February 2024

Identifiers

Local EPrints ID: 498422
URI: http://eprints.soton.ac.uk/id/eprint/498422
ISSN: 1991-9603
PURE UUID: 28357746-8fda-4777-8544-47e3a78dc9d0
ORCID for Ben A. Ward: ORCID iD orcid.org/0000-0003-1290-8270

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Date deposited: 18 Feb 2025 17:37
Last modified: 22 Aug 2025 02:24

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Contributors

Author: Aaron A. Naidoo-Bagwell
Author: Fanny M. Monteiro
Author: Katharine R. Hendry
Author: Scott Burgan
Author: Jamie D. Wilson
Author: Ben A. Ward ORCID iD
Author: Andy Ridgwell
Author: Daniel J. Conley

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