Post-processing and weighted combination of infectious disease nowcasts
Post-processing and weighted combination of infectious disease nowcasts
In infectious disease surveillance, incidence data are frequently subject to reporting delays and retrospective corrections, making it hard to assess current trends in real time. A variety of probabilistic nowcasting methods have been suggested to correct for the resulting biases. Building upon a recent comparison of eight of these methods in an application to COVID-19 hospitalization data from Germany, the objective of this paper is twofold. Firstly, we investigate how nowcasts from different models can be improved using statistical post-processing methods as employed, e.g., in weather forecasting. Secondly, we assess the potential of weighted ensemble nowcasts, i.e., weighted combinations of different probabilistic nowcasts. These are a natural extension of unweighted nowcast ensembles, which have previously been found to outperform most individual models. Both in post-processing and ensemble building, specific challenges arise from the fact that data are constantly revised, hindering the use of standard approaches. We find that post-processing can improve the individual performance of almost all considered models both in terms of evaluation scores and forecast interval coverage. Improving upon the performance of unweighted ensemble nowcasts via weighting schemes, on the other hand, poses a substantial challenge. Across an array of approaches, we find modest improvement in scores for some and decreased performance for most, with overall more favorable results for simple methods. In terms of forecast interval coverage, however, our methods lead to rather consistent improvements over the unweighted ensembles.
Amaral, André Victor Ribeiro
1b28446c-3de4-4f0f-b2da-05639736293c
Wolffram, Daniel
923c5c2b-eaba-4bd0-9919-5324cf8dc761
Moraga, Paula
97c36287-dd21-421a-ab2b-61a75f925cf6
Bracher, Johannes
e50e70b2-eb3c-4413-af8e-819aa2ed03ae
3 March 2025
Amaral, André Victor Ribeiro
1b28446c-3de4-4f0f-b2da-05639736293c
Wolffram, Daniel
923c5c2b-eaba-4bd0-9919-5324cf8dc761
Moraga, Paula
97c36287-dd21-421a-ab2b-61a75f925cf6
Bracher, Johannes
e50e70b2-eb3c-4413-af8e-819aa2ed03ae
Amaral, André Victor Ribeiro, Wolffram, Daniel, Moraga, Paula and Bracher, Johannes
(2025)
Post-processing and weighted combination of infectious disease nowcasts.
PLoS Computational Biology, 21 (3), [e1012836].
(doi:10.1371/journal.pcbi.1012836).
Abstract
In infectious disease surveillance, incidence data are frequently subject to reporting delays and retrospective corrections, making it hard to assess current trends in real time. A variety of probabilistic nowcasting methods have been suggested to correct for the resulting biases. Building upon a recent comparison of eight of these methods in an application to COVID-19 hospitalization data from Germany, the objective of this paper is twofold. Firstly, we investigate how nowcasts from different models can be improved using statistical post-processing methods as employed, e.g., in weather forecasting. Secondly, we assess the potential of weighted ensemble nowcasts, i.e., weighted combinations of different probabilistic nowcasts. These are a natural extension of unweighted nowcast ensembles, which have previously been found to outperform most individual models. Both in post-processing and ensemble building, specific challenges arise from the fact that data are constantly revised, hindering the use of standard approaches. We find that post-processing can improve the individual performance of almost all considered models both in terms of evaluation scores and forecast interval coverage. Improving upon the performance of unweighted ensemble nowcasts via weighting schemes, on the other hand, poses a substantial challenge. Across an array of approaches, we find modest improvement in scores for some and decreased performance for most, with overall more favorable results for simple methods. In terms of forecast interval coverage, however, our methods lead to rather consistent improvements over the unweighted ensembles.
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journal.pcbi.1012836
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Accepted/In Press date: 30 January 2025
Published date: 3 March 2025
Identifiers
Local EPrints ID: 500051
URI: http://eprints.soton.ac.uk/id/eprint/500051
ISSN: 1553-734X
PURE UUID: 3cd9cf1a-55f7-4735-b28e-dd5f695ca290
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Date deposited: 14 Apr 2025 16:36
Last modified: 22 Aug 2025 02:47
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Author:
André Victor Ribeiro Amaral
Author:
Daniel Wolffram
Author:
Paula Moraga
Author:
Johannes Bracher
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