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Understanding the role of KDM5B loss-of-function mutations in childhood disorders

Understanding the role of KDM5B loss-of-function mutations in childhood disorders
Understanding the role of KDM5B loss-of-function mutations in childhood disorders
Developmental disorders (DDs) are a diverse group of chronic conditions that affect the physical, cognitive or behavioural development of a child. The heterogeneous nature of these disorders, and their diverse aetiology poses signifcant diagnostic and therapeutic challenges, where patients are often left with limited treatment options. Increasing evidence highlights the importance of genetic mutations in these disorders. Loss-of-function (LoF) of KDM5B leads to a recognisable disorder characterised by intellectual disability and physical deformities. KDM5B is predominately expressed during early development where it has a crucial role in neurodevelopment. However, despite its association with this disorder, its underlying mechanisms remain under-explored.
This thesis aimed to elucidate the role of KDM5B in early neuronal differentiation, hypothesizing that KDM5B loss-of-function disrupts neuronal differentiation and contributes to pathogenesis of the neurodevelopmental disorder. CRISPR-Cas9 mediated KDM5B knockout models were generated in human neuroblastoma SH-SY5Y cells and induced pluripotent stem cells (iPSCs) to simulate key stages of neuronal development. It was observed that KDM5B LoF delayed the transition from pluripotent stem cell to neural progenitor cell. Conversely, at later stages of differentiation, KDM5B-KO cells exhibited enhanced neurite outgrowth and branching, suggesting a stage-dependent role of KDM5B. Transcriptomic and proteomic analyses further highlighted KDM5B’s involvement in proliferation, RNA splicing regulation, mitochondrial function and cell adhesion.
These fndings increase our understanding of KDM5B’s essential functions in neurodevelopment and have implications for both KDM5B-associated developmental disorders and cancer biology. Future research into these pathways may uncover novel therapeutic targets and further elucidate the diverse roles of KDM5B in human development.
KDM5B, retinoic acid, neuronal differentiation, iPSCs, developmental disorders, transcriptomics
University of Southampton
Harrington, Jack
1637c289-2191-454a-a600-464b829850b1
Harrington, Jack
1637c289-2191-454a-a600-464b829850b1
Walters, Zoë
e1ccd35d-63a9-4951-a5da-59122193740d
Willaime-Morawek, Sandrine
24a2981f-aa9e-4bf6-ad12-2ccf6b49f1c0
Gibson, Jane
855033a6-38f3-4853-8f60-d7d4561226ae
Wheway, Gabrielle
2e547e5d-b921-4243-a071-2208fd4cc090

Harrington, Jack (2025) Understanding the role of KDM5B loss-of-function mutations in childhood disorders. University of Southampton, Doctoral Thesis, 240pp.

Record type: Thesis (Doctoral)

Abstract

Developmental disorders (DDs) are a diverse group of chronic conditions that affect the physical, cognitive or behavioural development of a child. The heterogeneous nature of these disorders, and their diverse aetiology poses signifcant diagnostic and therapeutic challenges, where patients are often left with limited treatment options. Increasing evidence highlights the importance of genetic mutations in these disorders. Loss-of-function (LoF) of KDM5B leads to a recognisable disorder characterised by intellectual disability and physical deformities. KDM5B is predominately expressed during early development where it has a crucial role in neurodevelopment. However, despite its association with this disorder, its underlying mechanisms remain under-explored.
This thesis aimed to elucidate the role of KDM5B in early neuronal differentiation, hypothesizing that KDM5B loss-of-function disrupts neuronal differentiation and contributes to pathogenesis of the neurodevelopmental disorder. CRISPR-Cas9 mediated KDM5B knockout models were generated in human neuroblastoma SH-SY5Y cells and induced pluripotent stem cells (iPSCs) to simulate key stages of neuronal development. It was observed that KDM5B LoF delayed the transition from pluripotent stem cell to neural progenitor cell. Conversely, at later stages of differentiation, KDM5B-KO cells exhibited enhanced neurite outgrowth and branching, suggesting a stage-dependent role of KDM5B. Transcriptomic and proteomic analyses further highlighted KDM5B’s involvement in proliferation, RNA splicing regulation, mitochondrial function and cell adhesion.
These fndings increase our understanding of KDM5B’s essential functions in neurodevelopment and have implications for both KDM5B-associated developmental disorders and cancer biology. Future research into these pathways may uncover novel therapeutic targets and further elucidate the diverse roles of KDM5B in human development.

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More information

Published date: 29 April 2025
Keywords: KDM5B, retinoic acid, neuronal differentiation, iPSCs, developmental disorders, transcriptomics

Identifiers

Local EPrints ID: 500395
URI: http://eprints.soton.ac.uk/id/eprint/500395
PURE UUID: df65c282-204f-432c-97ad-eb31f3a7bb34
ORCID for Zoë Walters: ORCID iD orcid.org/0000-0002-1835-5868
ORCID for Sandrine Willaime-Morawek: ORCID iD orcid.org/0000-0002-1121-6419
ORCID for Jane Gibson: ORCID iD orcid.org/0000-0002-0973-8285
ORCID for Gabrielle Wheway: ORCID iD orcid.org/0000-0002-0494-0783

Catalogue record

Date deposited: 29 Apr 2025 16:33
Last modified: 11 Sep 2025 03:04

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Contributors

Author: Jack Harrington
Thesis advisor: Zoë Walters ORCID iD
Thesis advisor: Sandrine Willaime-Morawek ORCID iD
Thesis advisor: Jane Gibson ORCID iD
Thesis advisor: Gabrielle Wheway ORCID iD

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