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Mining higher-order triadic interactions

Mining higher-order triadic interactions
Mining higher-order triadic interactions
Complex systems often involve higher-order interactions that go beyond pairwise networks. Triadic interactions, where one node regulates the interaction between two others, are a fundamental form of higher-order dynamics found in many biological systems, from neuron-glia communication to gene regulation and ecosystems. However, triadic interactions have so far been mostly neglected. In this article, we propose the Triadic Perceptron Model (TPM) which shows that triadic interactions can modulate the mutual information between the dynamical states of two connected nodes. Leveraging this result, we formulate the Triadic Interaction Mining (TRIM) algorithm to extract triadic interactions from node metadata, and we apply this framework to gene expression data, finding new candidates for triadic interactions relevant for Acute Myeloid Leukemia. Our findings highlight crucial aspects of triadic interactions that are often ignored, offering a framework that can deepen our understanding of complex systems across biology, ecology, and climate science.
2041-1723
Niedostatek, Marta
1ef56c30-24a7-4d4c-ba1f-ea73c218d66e
Baptista, Anthony
3ca93c8d-b361-4b16-ab36-2b08df637251
Yamamoto, Jun
b8600615-d27b-44e1-a70d-6908ad6e406d
Kurths, Jurgen
33f8609e-42c6-487e-8428-3dc234dcfb4b
Sanchez-Garcia, Ruben
8246cea2-ae1c-44f2-94e9-bacc9371c3ed
Macarthur, Ben D.
2c0476e7-5d3e-4064-81bb-104e8e88bb6b
Bianconi, Ginestra
7a0e94b4-1b00-44ec-ae1e-0130880d377a
Niedostatek, Marta
1ef56c30-24a7-4d4c-ba1f-ea73c218d66e
Baptista, Anthony
3ca93c8d-b361-4b16-ab36-2b08df637251
Yamamoto, Jun
b8600615-d27b-44e1-a70d-6908ad6e406d
Kurths, Jurgen
33f8609e-42c6-487e-8428-3dc234dcfb4b
Sanchez-Garcia, Ruben
8246cea2-ae1c-44f2-94e9-bacc9371c3ed
Macarthur, Ben D.
2c0476e7-5d3e-4064-81bb-104e8e88bb6b
Bianconi, Ginestra
7a0e94b4-1b00-44ec-ae1e-0130880d377a

Niedostatek, Marta, Baptista, Anthony, Yamamoto, Jun, Kurths, Jurgen, Sanchez-Garcia, Ruben, Macarthur, Ben D. and Bianconi, Ginestra (2025) Mining higher-order triadic interactions. Nature Communications. (doi:10.1038/s41467-025-66577-z).

Record type: Article

Abstract

Complex systems often involve higher-order interactions that go beyond pairwise networks. Triadic interactions, where one node regulates the interaction between two others, are a fundamental form of higher-order dynamics found in many biological systems, from neuron-glia communication to gene regulation and ecosystems. However, triadic interactions have so far been mostly neglected. In this article, we propose the Triadic Perceptron Model (TPM) which shows that triadic interactions can modulate the mutual information between the dynamical states of two connected nodes. Leveraging this result, we formulate the Triadic Interaction Mining (TRIM) algorithm to extract triadic interactions from node metadata, and we apply this framework to gene expression data, finding new candidates for triadic interactions relevant for Acute Myeloid Leukemia. Our findings highlight crucial aspects of triadic interactions that are often ignored, offering a framework that can deepen our understanding of complex systems across biology, ecology, and climate science.

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More information

Accepted/In Press date: 10 January 2025
e-pub ahead of print date: 25 November 2025

Identifiers

Local EPrints ID: 507212
URI: http://eprints.soton.ac.uk/id/eprint/507212
ISSN: 2041-1723
PURE UUID: ea7e8e3e-c3d8-44ef-a819-cd933a4b80a8
ORCID for Ruben Sanchez-Garcia: ORCID iD orcid.org/0000-0001-6479-3028
ORCID for Ben D. Macarthur: ORCID iD orcid.org/0000-0002-5396-9750

Catalogue record

Date deposited: 01 Dec 2025 17:50
Last modified: 06 Dec 2025 02:43

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Contributors

Author: Marta Niedostatek
Author: Anthony Baptista
Author: Jun Yamamoto
Author: Jurgen Kurths
Author: Ginestra Bianconi

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