#! /bin/bash
#SBATCH --time=20:00:00
#SBATCH --nodes=1
#SBATCH --ntasks=40
#SBATCH --ntasks-per-node=40
#SBATCH --mem=20000
#multiqc.sh script

#Make MULTIQC directory
mkdir ./MULTIQC/

#Load conda
module load conda

#Activate virtual enviroment
source activate py3venv

#Run multiqc
multiqc ./FASTQC/ -o ./MULTIQC/

#Deactivate virtual enviroment
conda deactivate
