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Human CD1c-autoreactive T cells recognise Mycobacterium tuberculosis–infected antigen-presenting cells and display cytotoxic effector programmes

Human CD1c-autoreactive T cells recognise Mycobacterium tuberculosis–infected antigen-presenting cells and display cytotoxic effector programmes
Human CD1c-autoreactive T cells recognise Mycobacterium tuberculosis–infected antigen-presenting cells and display cytotoxic effector programmes
Tuberculosis (TB), caused by Mycobacterium tuberculosis (Mtb), remains the leading cause of death from infection globally, yet the contribution of non-classical T-cell pathways to human immunity remains poorly defined. CD1c-autoreactive T-cells, which recognise self-lipids presented by the antigen-presenting molecule CD1c, are frequent in human blood, but their role during infection is unclear. Here, we investigate how CD1c-expressing antigen-presenting cells (APCs) and Mtb infection shape CD1c-autoreactive T-cell responses using engineered human APC systems, complemented by single-cell transcriptomic profiling to define the ex vivo phenotypic landscape of these T-cells. CD1c is present within human TB granulomas, whereas Mtb down-modulates CD1c expression on infected APCs, consistent with an immune evasion strategy. CD1c-autoreactive T-cells respond more strongly to Mtb-infected CD1c+ APCs than to uninfected cells, exhibiting enhanced activation, cytotoxicity, and diverse cytokine secretion via CD1c-dependent recognition. Under in vitro conditions, these T-cells reduce relative Mtb burden in infected phagocytes. Single-cell RNA-sequencing reveals cytotoxic effector-memory programmes and expression of antimicrobial molecules, providing a mechanistic basis for these responses. Together, these findings define a human CD1c-restricted T-cell response to Mtb-infected APCs and identify autoreactive CD1c-restricted T-cells as a candidate cellular axis for lipid-directed immunity in TB.
bioRxiv
Milton, Matthew
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Farag, Sahar
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Garay Baquero, Diana
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Gullick, Jennie
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Burns, Daniel Mark
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Szoke-Kovacs, Rita
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Trimby - Smith, Patrick
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Look, Alex
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Stopforth, Richard J
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Lepore, Marco
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Cole, David K.
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Denney, Laura
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White, Andrew
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Sharpe, Sally
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Leslie, Alasdair
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Vallejo Pulido, Andres
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Tezera, Liku
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Elkington, Paul
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Mansour, Salah
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Milton, Matthew
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Farag, Sahar
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Garay Baquero, Diana
da9136fe-3d47-4d04-8ab3-96bfe17a773c
Gullick, Jennie
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Burns, Daniel Mark
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Szoke-Kovacs, Rita
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Trimby - Smith, Patrick
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Look, Alex
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Stopforth, Richard J
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Lepore, Marco
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Cole, David K.
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Denney, Laura
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White, Andrew
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Sharpe, Sally
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Leslie, Alasdair
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Vallejo Pulido, Andres
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Tezera, Liku
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Elkington, Paul
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Mansour, Salah
4aecba5a-8387-4f7b-b766-0a9c309ccb8b

[Unknown type: UNSPECIFIED]

Record type: UNSPECIFIED

Abstract

Tuberculosis (TB), caused by Mycobacterium tuberculosis (Mtb), remains the leading cause of death from infection globally, yet the contribution of non-classical T-cell pathways to human immunity remains poorly defined. CD1c-autoreactive T-cells, which recognise self-lipids presented by the antigen-presenting molecule CD1c, are frequent in human blood, but their role during infection is unclear. Here, we investigate how CD1c-expressing antigen-presenting cells (APCs) and Mtb infection shape CD1c-autoreactive T-cell responses using engineered human APC systems, complemented by single-cell transcriptomic profiling to define the ex vivo phenotypic landscape of these T-cells. CD1c is present within human TB granulomas, whereas Mtb down-modulates CD1c expression on infected APCs, consistent with an immune evasion strategy. CD1c-autoreactive T-cells respond more strongly to Mtb-infected CD1c+ APCs than to uninfected cells, exhibiting enhanced activation, cytotoxicity, and diverse cytokine secretion via CD1c-dependent recognition. Under in vitro conditions, these T-cells reduce relative Mtb burden in infected phagocytes. Single-cell RNA-sequencing reveals cytotoxic effector-memory programmes and expression of antimicrobial molecules, providing a mechanistic basis for these responses. Together, these findings define a human CD1c-restricted T-cell response to Mtb-infected APCs and identify autoreactive CD1c-restricted T-cells as a candidate cellular axis for lipid-directed immunity in TB.

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Accepted/In Press date: 20 January 2026

Identifiers

Local EPrints ID: 510372
URI: http://eprints.soton.ac.uk/id/eprint/510372
PURE UUID: e4adc5be-10c6-40db-b5a7-129a05b554a5
ORCID for Matthew Milton: ORCID iD orcid.org/0000-0003-2509-7171
ORCID for Sahar Farag: ORCID iD orcid.org/0000-0003-2360-7094
ORCID for Diana Garay Baquero: ORCID iD orcid.org/0000-0002-9450-8504
ORCID for Jennie Gullick: ORCID iD orcid.org/0000-0002-3612-1926
ORCID for Richard J Stopforth: ORCID iD orcid.org/0000-0002-0054-7503
ORCID for Andres Vallejo Pulido: ORCID iD orcid.org/0000-0002-4688-0598
ORCID for Liku Tezera: ORCID iD orcid.org/0000-0002-7898-6709
ORCID for Paul Elkington: ORCID iD orcid.org/0000-0003-0390-0613
ORCID for Salah Mansour: ORCID iD orcid.org/0000-0002-5982-734X

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Date deposited: 27 Mar 2026 17:50
Last modified: 28 Mar 2026 03:00

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Contributors

Author: Matthew Milton ORCID iD
Author: Sahar Farag ORCID iD
Author: Diana Garay Baquero ORCID iD
Author: Jennie Gullick ORCID iD
Author: Daniel Mark Burns
Author: Rita Szoke-Kovacs
Author: Patrick Trimby - Smith
Author: Alex Look
Author: Richard J Stopforth ORCID iD
Author: Marco Lepore
Author: David K. Cole
Author: Laura Denney
Author: Andrew White
Author: Sally Sharpe
Author: Alasdair Leslie
Author: Andres Vallejo Pulido ORCID iD
Author: Liku Tezera ORCID iD
Author: Paul Elkington ORCID iD
Author: Salah Mansour ORCID iD

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