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Native-like soluble E1E2 glycoprotein heterodimers on self-assembling protein nanoparticles for hepatitis C virus vaccine design

Native-like soluble E1E2 glycoprotein heterodimers on self-assembling protein nanoparticles for hepatitis C virus vaccine design
Native-like soluble E1E2 glycoprotein heterodimers on self-assembling protein nanoparticles for hepatitis C virus vaccine design

Hepatitis C virus (HCV) is a leading cause of chronic liver disease, cirrhosis, and hepatocellular carcinoma worldwide. Development of an E1E2-based HCV vaccine has been hindered by the difficulty of producing a soluble E1E2 (sE1E2) antigen that faithfully recapitulates the native virion-associated heterodimer. Guided by cryo-electron microscopy (cryo-EM) structures, we engineer genotype 1a H77 sE1E2 by truncating the E1 and E2 stems (Cut 1), deleting a putative fusion peptide-containing region in E1 (Cut 2), and stabilizing the heterodimer using diverse scaffolds. All H77 sE1E2.Cut 1+2 scaffolds exhibit native-like E1-E2 association and strong binding to the broadly neutralizing antibody (bNAb) AR4A. A genotype 1a HCV-1 sE1E2.Cut 1+2 variant scaffolded by a modified SpyTag/SpyCatcher (SPYΔN) is selected for in vitro and in vivo characterization, as well as further construct refinement. The structure of this HCV-1 sE1E2 construct in complex with bNAbs is determined by cryo-EM and negative-stain EM (nsEM), with an nsEM-based strategy established for antibody epitope mapping. HCV-1 sE1E2.Cut 1+2.SPYΔN is displayed on self-assembling protein nanoparticles (SApNPs) to enhance immunogenicity. The HCV-1 sE1E2.Cut 1+2.SPYΔN heterodimer and SApNPs bearing wildtype or modified glycans are evaluated in mice, alongside E2 core-based immunogens for comparison. Together, these results establish a framework for advancing E1E2-based HCV vaccines toward clinical development.

2041-1723
He, Linling
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Lee, Yi-Zong
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Zhang, Yi-Nan
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Newby, Maddy L
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Janus, Benjamin M
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Gonzalez, Fabrizio G
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Ward, Garrett
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DesRoberts, Connor
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Hung, Shr-Hau
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Giang, Erick
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Allen, Joel D
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Kulakova, Liudmila
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Toth, Eric A
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Fuerst, Thomas R
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Law, Mansun
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Ofek, Gilad
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Crispin, Max
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Zhu, Jiang
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He, Linling
c873e7ef-37de-4629-b646-19e06d13e38f
Lee, Yi-Zong
ee30e3f7-d434-4c23-b7ae-ad5d2bc33c75
Zhang, Yi-Nan
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Newby, Maddy L
417cba47-6a6f-42b9-8b9c-640f0518c621
Janus, Benjamin M
83388355-686a-4717-92fe-a5802afd6029
Gonzalez, Fabrizio G
42360419-2699-4624-8c1d-092957ae5432
Ward, Garrett
6f4eb40f-b4fa-4669-b5f9-47fda599e1e5
DesRoberts, Connor
f994fac3-dcf3-4638-afde-195976c9cf03
Hung, Shr-Hau
160c2539-0538-46a7-a2a8-3c650dfdf580
Giang, Erick
12bf79c9-4b1c-4d11-868b-756464f2647f
Allen, Joel D
c89d5569-7659-4835-b535-c9586e956b3a
Kulakova, Liudmila
ab15eb9e-087d-4bba-9f10-0a67b8df001e
Toth, Eric A
636f6bd3-8a16-4e06-89d2-7676c6cbf4e4
Fuerst, Thomas R
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Law, Mansun
d3c17045-8c22-4e26-a390-6773f70303d1
Ofek, Gilad
e73e9c40-61d2-4326-9c2e-bcefbbd9a1d8
Crispin, Max
cd980957-0943-4b89-b2b2-710f01f33bc9
Zhu, Jiang
65e84bc5-4a0e-4318-b7ce-86b9332a8a85

He, Linling, Lee, Yi-Zong, Zhang, Yi-Nan, Newby, Maddy L, Janus, Benjamin M, Gonzalez, Fabrizio G, Ward, Garrett, DesRoberts, Connor, Hung, Shr-Hau, Giang, Erick, Allen, Joel D, Kulakova, Liudmila, Toth, Eric A, Fuerst, Thomas R, Law, Mansun, Ofek, Gilad, Crispin, Max and Zhu, Jiang (2026) Native-like soluble E1E2 glycoprotein heterodimers on self-assembling protein nanoparticles for hepatitis C virus vaccine design. Nature Communications, 17, [2633]. (doi:10.1038/s41467-026-69418-9).

Record type: Article

Abstract

Hepatitis C virus (HCV) is a leading cause of chronic liver disease, cirrhosis, and hepatocellular carcinoma worldwide. Development of an E1E2-based HCV vaccine has been hindered by the difficulty of producing a soluble E1E2 (sE1E2) antigen that faithfully recapitulates the native virion-associated heterodimer. Guided by cryo-electron microscopy (cryo-EM) structures, we engineer genotype 1a H77 sE1E2 by truncating the E1 and E2 stems (Cut 1), deleting a putative fusion peptide-containing region in E1 (Cut 2), and stabilizing the heterodimer using diverse scaffolds. All H77 sE1E2.Cut 1+2 scaffolds exhibit native-like E1-E2 association and strong binding to the broadly neutralizing antibody (bNAb) AR4A. A genotype 1a HCV-1 sE1E2.Cut 1+2 variant scaffolded by a modified SpyTag/SpyCatcher (SPYΔN) is selected for in vitro and in vivo characterization, as well as further construct refinement. The structure of this HCV-1 sE1E2 construct in complex with bNAbs is determined by cryo-EM and negative-stain EM (nsEM), with an nsEM-based strategy established for antibody epitope mapping. HCV-1 sE1E2.Cut 1+2.SPYΔN is displayed on self-assembling protein nanoparticles (SApNPs) to enhance immunogenicity. The HCV-1 sE1E2.Cut 1+2.SPYΔN heterodimer and SApNPs bearing wildtype or modified glycans are evaluated in mice, alongside E2 core-based immunogens for comparison. Together, these results establish a framework for advancing E1E2-based HCV vaccines toward clinical development.

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Accepted/In Press date: 30 January 2026
e-pub ahead of print date: 11 February 2026
Published date: 11 February 2026
Additional Information: © 2026. The Author(s).

Identifiers

Local EPrints ID: 510459
URI: http://eprints.soton.ac.uk/id/eprint/510459
ISSN: 2041-1723
PURE UUID: fac506f3-87b8-43ce-bcad-81ca5c8e6452
ORCID for Joel D Allen: ORCID iD orcid.org/0000-0003-2547-968X
ORCID for Max Crispin: ORCID iD orcid.org/0000-0002-1072-2694

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Date deposited: 31 Mar 2026 17:07
Last modified: 01 Apr 2026 02:03

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Contributors

Author: Linling He
Author: Yi-Zong Lee
Author: Yi-Nan Zhang
Author: Maddy L Newby
Author: Benjamin M Janus
Author: Fabrizio G Gonzalez
Author: Garrett Ward
Author: Connor DesRoberts
Author: Shr-Hau Hung
Author: Erick Giang
Author: Joel D Allen ORCID iD
Author: Liudmila Kulakova
Author: Eric A Toth
Author: Thomas R Fuerst
Author: Mansun Law
Author: Gilad Ofek
Author: Max Crispin ORCID iD
Author: Jiang Zhu

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