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Investigating macroevolutionary diversification of feeding structures in sea urchins using deep learning

Investigating macroevolutionary diversification of feeding structures in sea urchins using deep learning
Investigating macroevolutionary diversification of feeding structures in sea urchins using deep learning
Sea urchins (Echinoidea) have one of the most complete fossil records of any animal, presenting an ideal model system to answer a fundamental question in evolutionary biology: how does functional performance influence macroevolution across deep time? Crown group echinoids are characterized by a distinct structure – the perignathic girdle (PG) – which serves as the attachment site for the muscles that move their feeding apparatus. A wide diversity of PG morphologies exists, ranging from small, gracile pegs to robust wing-like ridges. While the PG has been recognised as a crucial feature underlying echinoid systematics, the functional roles of the different morphologies are unknown, making its role in echinoid diversification unclear. Combining deep learning approaches to microCT segmentation with 3D geometric morphometrics, we have quantified PG shape for 100 taxa, forming the largest growing databases of 3D echinoid morphology to date. Preliminary results reveal convergent evolution of PG shapes across evolutionarily distinct lineages, suggesting that there may be strong responses to selective pressures related to performance, with adaptive optima driving the evolution of different PG morphologies. This work provides insight into how changes in the functional performance of feeding morphology have influenced morphological and ecological diversification over the last 300 million years.
Leavey, Alice
2abe23e1-f3c9-47e3-83b7-c3a9fc60a5e9
Madappuli Arachchige, Gayashan
fd4a1f59-7c16-4e4b-9e8e-923d55acd577
Felice, Ryan
87807260-3b9d-44ab-aa60-fa4290c6357c
Hebdon, Nicholas
3cd21bce-f30a-4ebb-aaca-d344de76e191
Petsios, Elizabeth
a5cdbcb2-f8b8-4ee4-8e75-8fa9271a08d6
Thompson, Jeffrey R.
d2c9b7bb-3e33-4918-97c8-0c36e7af30a4
Leavey, Alice
2abe23e1-f3c9-47e3-83b7-c3a9fc60a5e9
Madappuli Arachchige, Gayashan
fd4a1f59-7c16-4e4b-9e8e-923d55acd577
Felice, Ryan
87807260-3b9d-44ab-aa60-fa4290c6357c
Hebdon, Nicholas
3cd21bce-f30a-4ebb-aaca-d344de76e191
Petsios, Elizabeth
a5cdbcb2-f8b8-4ee4-8e75-8fa9271a08d6
Thompson, Jeffrey R.
d2c9b7bb-3e33-4918-97c8-0c36e7af30a4

Leavey, Alice, Madappuli Arachchige, Gayashan, Felice, Ryan, Hebdon, Nicholas, Petsios, Elizabeth and Thompson, Jeffrey R. (2025) Investigating macroevolutionary diversification of feeding structures in sea urchins using deep learning. Palaeontological Association Annual Meeting, , Portsmouth, United Kingdom. 11 - 15 Dec 2025. 1 pp .

Record type: Conference or Workshop Item (Poster)

Abstract

Sea urchins (Echinoidea) have one of the most complete fossil records of any animal, presenting an ideal model system to answer a fundamental question in evolutionary biology: how does functional performance influence macroevolution across deep time? Crown group echinoids are characterized by a distinct structure – the perignathic girdle (PG) – which serves as the attachment site for the muscles that move their feeding apparatus. A wide diversity of PG morphologies exists, ranging from small, gracile pegs to robust wing-like ridges. While the PG has been recognised as a crucial feature underlying echinoid systematics, the functional roles of the different morphologies are unknown, making its role in echinoid diversification unclear. Combining deep learning approaches to microCT segmentation with 3D geometric morphometrics, we have quantified PG shape for 100 taxa, forming the largest growing databases of 3D echinoid morphology to date. Preliminary results reveal convergent evolution of PG shapes across evolutionarily distinct lineages, suggesting that there may be strong responses to selective pressures related to performance, with adaptive optima driving the evolution of different PG morphologies. This work provides insight into how changes in the functional performance of feeding morphology have influenced morphological and ecological diversification over the last 300 million years.

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Published date: 11 December 2025
Venue - Dates: Palaeontological Association Annual Meeting, , Portsmouth, United Kingdom, 2025-12-11 - 2025-12-15

Identifiers

Local EPrints ID: 510603
URI: http://eprints.soton.ac.uk/id/eprint/510603
PURE UUID: 5cc975df-340d-46d7-a5a6-1aac509a5b01
ORCID for Alice Leavey: ORCID iD orcid.org/0000-0003-4062-8399
ORCID for Jeffrey R. Thompson: ORCID iD orcid.org/0000-0003-3485-172X

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Date deposited: 14 Apr 2026 16:32
Last modified: 16 Apr 2026 02:19

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Contributors

Author: Alice Leavey ORCID iD
Author: Gayashan Madappuli Arachchige
Author: Ryan Felice
Author: Nicholas Hebdon
Author: Elizabeth Petsios
Author: Jeffrey R. Thompson ORCID iD

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