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Imaging three-dimensional molecular structure and dynamics with multiparticle covariance and cumulant coulomb explosion analysis

Imaging three-dimensional molecular structure and dynamics with multiparticle covariance and cumulant coulomb explosion analysis
Imaging three-dimensional molecular structure and dynamics with multiparticle covariance and cumulant coulomb explosion analysis
Coulomb explosion imaging (CEI) provides a direct means of imaging molecular geometry by correlating fragment ion momenta following the fragmentation of a molecular polycation. Here, we demonstrate the use of three-body covariance and four-body cumulant analysis to extract three-dimensional (3D) structural information from the X-ray-induced Coulomb explosion of tert-butyl iodide (C4H9I). Site-selective ionization at the iodine 4d edge with intense femtosecond soft X-ray pulses from an X-ray free-electron laser (XFEL) enables rapid charge buildup and molecular breakup. By correlating ionic fragments in the molecular frame, we isolate complete dissociation channels and reveal subtle structural changes, such as umbrella-type motion of the branched alkyl chain, during the ionization process. Comparison with point-charge simulations of the Coulomb explosion shows close agreement, validating the approach. These results establish covariance/cumulant mapping as a powerful strategy for imaging complex three-dimensional molecular structures and point the way toward time-resolved CEI using both XFEL and tabletop sources for capturing ultrafast structural dynamics.
Ionization, X-Rays, imaging, molecular imaging
1948-7185
3605-3616
Cheng, Chuan
447be97d-ef68-46ee-ba48-4e730ea290eb
Kumagai, Yoshiaki
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Nagaya, Kiyonobu
31bc880d-3561-4fdb-83a2-f42d314b484a
Gejo, Tatsuo
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Harries, James R.
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Burt, Michael
54a7c4cb-faad-4b04-b6c1-37c9416b640d
Brouard, Mark
7df53aa4-2140-4161-8ed6-22858db91a8b
Duley, Avijit
7e318b93-d340-4fcd-a0c7-461704fe5117
Hockett, Paul
abd295d6-f771-4980-859c-3e2290ce35de
Mcmanus, Joseph W.
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Minns, Russell
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Mondal, Subhendu
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Owada, Shigeki
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Razmus, Weronika Olimpia
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Rolles, Daniel
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Sato, Takahiro
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Thompson, Henry James
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Venkatachalam, Anbu S.
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Warne, Emily M.
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Walmsley, Tiffany
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Yagi, Mana
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Bucksbaum, Philip H
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Allum, Felix
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Forbes, Ruaridh
46a98728-df5f-47b3-95c5-be831d865429
et al.
Cheng, Chuan
447be97d-ef68-46ee-ba48-4e730ea290eb
Kumagai, Yoshiaki
1e190886-c13e-4a1f-9088-250a4c6f6a28
Nagaya, Kiyonobu
31bc880d-3561-4fdb-83a2-f42d314b484a
Gejo, Tatsuo
46284244-4bc4-41b7-8a6a-49db9f8a6ddc
Harries, James R.
3ce5f114-2f72-43c1-9482-4326378ce76f
Burt, Michael
54a7c4cb-faad-4b04-b6c1-37c9416b640d
Brouard, Mark
7df53aa4-2140-4161-8ed6-22858db91a8b
Duley, Avijit
7e318b93-d340-4fcd-a0c7-461704fe5117
Hockett, Paul
abd295d6-f771-4980-859c-3e2290ce35de
Mcmanus, Joseph W.
4a894a6e-aa36-4ddf-b3df-a5f603298254
Minns, Russell
85280db4-c5a6-4a4c-82fe-75693c6a6045
Mondal, Subhendu
cf171186-3e79-4203-ab1d-414300cd3760
Owada, Shigeki
516f9da6-9f0b-40d7-af17-dfca12e8cd3d
Razmus, Weronika Olimpia
33898418-324e-4351-b5f3-c2fe2b6eff96
Rolles, Daniel
433bfa88-6d92-4933-a6b7-c0a504c528c4
Sato, Takahiro
c7aca033-149a-4554-b898-82775ba75e5c
Thompson, Henry James
2656b8de-fb3f-4702-bb49-a60a3f837d1d
Venkatachalam, Anbu S.
6cf16e5c-3fe1-4a0a-b18a-c44e28a69c22
Warne, Emily M.
86188650-7618-4599-836a-da000a56d8a9
Walmsley, Tiffany
948ea779-cf4a-4901-8b6d-b289fc8329b2
Yagi, Mana
434baa4d-efc8-477d-a9f3-3cfde651ceb9
Bucksbaum, Philip H
f91affb1-2ff7-4989-95a6-8ca1933e43d0
Allum, Felix
8946af5f-251f-47fb-b336-6eb3a68f2b3c
Forbes, Ruaridh
46a98728-df5f-47b3-95c5-be831d865429

Cheng, Chuan, Kumagai, Yoshiaki and Nagaya, Kiyonobu , et al. (2026) Imaging three-dimensional molecular structure and dynamics with multiparticle covariance and cumulant coulomb explosion analysis. The Journal of Physical Chemistry Letters, 17 (12), 3605-3616. (doi:10.1021/acs.jpclett.6c00162).

Record type: Article

Abstract

Coulomb explosion imaging (CEI) provides a direct means of imaging molecular geometry by correlating fragment ion momenta following the fragmentation of a molecular polycation. Here, we demonstrate the use of three-body covariance and four-body cumulant analysis to extract three-dimensional (3D) structural information from the X-ray-induced Coulomb explosion of tert-butyl iodide (C4H9I). Site-selective ionization at the iodine 4d edge with intense femtosecond soft X-ray pulses from an X-ray free-electron laser (XFEL) enables rapid charge buildup and molecular breakup. By correlating ionic fragments in the molecular frame, we isolate complete dissociation channels and reveal subtle structural changes, such as umbrella-type motion of the branched alkyl chain, during the ionization process. Comparison with point-charge simulations of the Coulomb explosion shows close agreement, validating the approach. These results establish covariance/cumulant mapping as a powerful strategy for imaging complex three-dimensional molecular structures and point the way toward time-resolved CEI using both XFEL and tabletop sources for capturing ultrafast structural dynamics.

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Cheng_et_al_2026_Imaging_three_dimensional - Accepted Manuscript
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Accepted/In Press date: 19 February 2026
e-pub ahead of print date: 10 March 2026
Published date: 26 March 2026
Keywords: Ionization, X-Rays, imaging, molecular imaging

Identifiers

Local EPrints ID: 510947
URI: http://eprints.soton.ac.uk/id/eprint/510947
ISSN: 1948-7185
PURE UUID: 8b32f3c0-0779-48b2-a834-7ac4d762782d
ORCID for Russell Minns: ORCID iD orcid.org/0000-0001-6775-2977

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Date deposited: 27 Apr 2026 16:49
Last modified: 28 Apr 2026 01:51

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Contributors

Author: Chuan Cheng
Author: Yoshiaki Kumagai
Author: Kiyonobu Nagaya
Author: Tatsuo Gejo
Author: James R. Harries
Author: Michael Burt
Author: Mark Brouard
Author: Avijit Duley
Author: Paul Hockett
Author: Joseph W. Mcmanus
Author: Russell Minns ORCID iD
Author: Subhendu Mondal
Author: Shigeki Owada
Author: Weronika Olimpia Razmus
Author: Daniel Rolles
Author: Takahiro Sato
Author: Henry James Thompson
Author: Anbu S. Venkatachalam
Author: Emily M. Warne
Author: Tiffany Walmsley
Author: Mana Yagi
Author: Philip H Bucksbaum
Author: Felix Allum
Author: Ruaridh Forbes
Corporate Author: et al.

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