chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	820400	906542	2	neutral	AA	2.92606	germline	1	0.127699652469476	0.412577328942571
1	5668964	5673066	4	gain	AABB	1.02175	germline	1	0.0143148744585334	0.0366517282066527
1	16613100	16635661	8	gain	AAAAABBB	6.54855	germline	1	0.000107579927221867	9.08388849185648e-05
1	16719752	16725905	4	gain	AAAB	3.489	germline	1	0.00270116896070241	0.00495940980831
1	16900240	16943311	3	gain	AAB	0.742554	germline	1	4.29595004272303e-10	1.08488773520321e-11
1	31431575	31433626	7	gain	AAAABBB	2.59161	germline	1	0.0832765175128096	0.270057836944422
1	33617941	33708185	2	neutral	AA	36.3786	somatic	0	0.00246822787591556	0.00219863707681778
1	36124263	36319108	2	neutral	AA	66.185	somatic	0	1.96822742906455e-05	2.27583433568546e-05
1	36319108	36356026	2	neutral	AA	100	somatic	0	0.522340530655665	0.811490854635388
1	55662089	55668242	1	loss	A	-1	germline	1	0.00308882633022747	0.00624734400298765
1	61646907	61655111	1	loss	A	-1	somatic	0	0.00144987317552416	0.00208217629165941
1	103561143	103616520	3	gain	AAB	5.40568	germline	1	1.98884762294164e-11	1.89737114908439e-13
1	125080235	125082286	10	gain	-	-1	germline	1	0.0832745172198849	0.27005436294542
1	125162275	125166377	5	gain	-	-1	germline	1	0.014310533599705	0.0366391315722869
1	152789245	152797449	1	loss	A	-1	somatic	0	0.00133674045545479	0.00151601280798297
1	158897123	158901225	1	loss	A	-1	somatic	0	0.0165883185796758	0.0435699747630908
1	169258775	169273132	1	loss	A	-1	germline	1	1.31969894097881e-05	6.53876314615776e-06
1	207368406	207372508	0	loss	-	-1	germline	1	0.0143069039549695	0.0366334286820563
1	209903442	209913697	1	loss	A	-1	somatic	0	0.00028746887673517	0.000308107991377371
1	224012271	224014322	8	gain	AAAAAAAA	1.90914	germline	1	0.0832765175128096	0.270057836944422
1	228067098	228073251	1	loss	A	-1	somatic	0	0.00391226785017881	0.00966196659600782
1	234775919	234782072	6	gain	AAAABB	3.70973	germline	1	0.00270088138424659	0.00495873435360561
1	236096763	236098814	7	gain	AAAAABB	11.5549	germline	1	0.0832765175128096	0.270057836944422
1	241862124	241903144	2	neutral	AA	18.1895	somatic	0	0.151532870997406	0.0540956778130739
1	246068725	246232805	2	neutral	AA	100	somatic	0	0.130080641056959	0.383232443633252
1	248585302	248632475	1	loss	A	-1	germline	1	7.65567552016902e-15	0
2	3179050	3181101	7	gain	-	-1	germline	1	0.0832765175128096	0.270057836944422
2	16131115	16135217	1	loss	A	-1	somatic	0	0.020386137203401	0.0554302824824211
2	32914448	32916499	4	gain	AABB	100	germline	1	0.0832895203655557	0.27008041873309
2	34473208	34506024	1	loss	A	-1	germline	1	1.52622779535099e-10	2.88147283811213e-12
2	35750981	35767389	1	loss	A	-1	germline	1	5.4731075782239e-06	1.1105119371857e-06
2	39260242	39471495	2	neutral	AA	100	somatic	0	0.1583466184334	0.127587959324491
2	44008307	44045225	2	neutral	AA	55.8958	somatic	0	0.141511055747717	0.325612942116679
2	51508814	51517018	2	neutral	AA	100	somatic	0	0.52410195688049	0.790798097948324
2	54337143	54341245	1	loss	A	-1	somatic	0	0.0186783458530868	0.0465390375595943
2	55282654	55399561	2	neutral	AA	48.3752	somatic	0	0.118251092960397	0.247838711946782
2	57592080	57649508	2	neutral	AA	54.5679	somatic	0	0.757951476662451	0.342100910768117
2	68681837	68712602	2	neutral	AA	28.7298	somatic	0	0.570644992306745	0.965085770390124
2	80799145	80836063	2	neutral	AA	32.7554	somatic	0	0.396272071443847	0.771207082288466
2	89772270	89784576	4	gain	-	-1	germline	1	2.21127489309192e-05	1.23001466439954e-05
2	89784576	89796882	3	gain	-	-1	germline	1	0.0994264824642372	0.0546864812248283
2	89796882	89805086	4	gain	AABB	8.35308	germline	1	0.000532490352164908	0.000671447653936341
2	89805086	89825596	4	gain	AAAA	3.33602	germline	1	9.65191457282278e-07	2.2586586134743e-07
2	89825596	89839953	26	gain	AAAAAAAAAAAAAAAAABBBBBBBBB	4.80418	germline	1	4.59529482632692e-06	1.66402043288993e-06
2	89839953	89846106	4	gain	AABB	15.5102	germline	1	0.00270122647935097	0.00495965106257157
2	89846106	89848157	4	gain	AAAB	100	germline	1	0.083284519073729	0.270071733266648
2	100617958	100681539	2	neutral	AA	100	somatic	0	0.380807561406314	0.766562911603123
2	101403491	101438358	2	neutral	AA	49.2229	somatic	0	0.156117572696558	0.477997174864052
2	102394124	102416685	2	neutral	AA	100	somatic	0	0.176407767859965	0.309594009558794
2	105806988	105845957	2	neutral	AA	27.3617	somatic	0	0.739411597818601	0.709776100928398
2	107252943	107271402	2	neutral	AA	100	somatic	0	0.0532837519695036	0.0965916418517081
2	113775123	113793582	2	neutral	AA	36.5126	somatic	0	0.179229561276922	0.453918264225584
2	124618760	124700800	2	neutral	AA	100	somatic	0	0.835463224409577	0.904850923451723
2	125246366	125256621	2	neutral	AA	41.2052	somatic	0	0.368910027145071	0.580842057298356
2	125683229	125693484	1	loss	A	-1	germline	1	0.00864283293108558	0.00592836801339391
2	129331958	129738056	2	neutral	AA	7.67765	somatic	0	0.0295624128555748	0.00291373138802953
2	132238225	132279245	2	neutral	AA	1.29962	somatic	0	0.00539151041131832	0.0170027320697802
2	144244779	144281697	2	neutral	AA	36.3786	somatic	0	0.588373182868127	0.668553931818644
2	151273556	151339188	2	neutral	AA	100	somatic	0	0.0768718437310162	0.090829424208613
2	158064417	158189528	2	neutral	AA	21.6978	somatic	0	0.159721047157035	0.250513790862413
2	159323731	159340139	2	neutral	AA	100	somatic	0	0.595001117557638	0.694673841325451
2	172039931	172046084	1	loss	A	-1	germline	1	0.00389620664930135	0.00948017598511608
2	176400357	176408561	1	loss	A	-1	germline	1	0.0205406816537745	0.055913042367038
2	182602581	182705131	2	neutral	AA	52.1627	somatic	0	0.236282468299146	0.339275612126544
2	186179525	186515889	2	neutral	AA	83.6614	somatic	0	0.00162015910382376	0.00961747434443727
2	195173160	195193670	2	neutral	AA	100	somatic	0	0.967491745561946	0.868186538672296
2	195431586	195542340	2	neutral	AA	100	somatic	0	0.203713249729155	0.320359787224961
2	201740462	201933256	2	neutral	AA	67.0529	somatic	0	0.88999235885466	0.675435581944329
2	205313304	205342018	2	neutral	AA	100	somatic	0	0.629788538749997	0.70402730483587
2	207485313	207495568	1	loss	A	-1	germline	1	0.000409013176176427	0.000298124876918493
2	209819351	209846014	2	neutral	AA	54.5686	somatic	0	0.266606460742626	0.305962776655677
2	212290806	212331826	2	neutral	AA	100	somatic	0	0.869114925398473	0.841120952841104
2	222997026	223005230	1	loss	A	-1	somatic	0	0.00162795791584429	0.00210772170814733
2	228399360	228401411	0	loss	-	-1	germline	1	0.083267016468054	0.270041335739683
2	237862674	237897541	2	neutral	AA	54.5678	somatic	0	0.391020945662809	0.376751746127519
2	241271436	241289895	2	neutral	AA	54.5678	somatic	0	0.865208695225	0.948498436933852
3	186641	192794	1	loss	A	-1	germline	1	0.00553503924196765	0.00896533869881599
3	4046623	4058929	1	loss	A	-1	germline	1	7.31281415226911e-05	4.41194080467167e-05
3	30631685	30648093	2	neutral	AA	100	somatic	0	0.568331210175822	0.578777934066608
3	31573094	31591553	2	neutral	AA	100	somatic	0	0.0710995860255716	0.168944196485573
3	32059181	32067385	1	loss	A	-1	somatic	0	0.00124826909326624	0.00171683228929842
3	34604472	34629084	2	neutral	AA	100	somatic	0	0.462880664697298	0.628205987424258
3	49982870	50107981	2	neutral	AA	100	somatic	0	0.00024411665025534	0.000451972170394055
3	51738526	51744679	2	neutral	AA	36.3786	somatic	0	0.0673006129388946	0.228359222109143
3	72482340	72488493	2	neutral	AA	100	somatic	0	0.716711109414292	0.986933820896532
3	75669594	76102355	2	neutral	AA	0.269743	germline	1	0.0219781727593678	0.150982675295053
3	77558565	77603687	2	neutral	AA	100	germline	1	0.00638816724016743	0.0195276390948838
3	79470097	79599310	2	neutral	AA	44.4998	somatic	0	0.00452381187643315	0.000406761336014472
3	86902921	86933686	2	neutral	AA	93.3669	germline	1	0.00690457596206275	0.0172728198911152
3	90166062	90444998	2	neutral	AA	0.684	somatic	0	0.132637892084147	0.448783529964147
3	90672659	90711628	0	loss	-	-1	germline	1	2.66082974564965e-11	3.26072502332408e-12
3	96618508	96622610	1	loss	A	-1	somatic	0	0.0203845226268482	0.0554044185696435
3	98076769	98084973	2	neutral	AA	100	somatic	0	0.335126601725819	0.730632500286618
3	98687967	98696171	1	loss	A	-1	germline	1	0.00417995423837936	0.00953598735867778
3	104186698	104227718	2	neutral	AA	70.3236	somatic	0	0.363833728361017	0.11543589693927
3	104256432	104301554	2	neutral	AA	54.5873	somatic	0	0.996572555670941	0.800402297208451
3	110842193	110971406	2	neutral	AA	93.3849	somatic	0	0.0698475443657138	0.0410781824959411
3	123357395	123382007	2	neutral	AA	100	somatic	0	0.355283367920964	0.226263922477254
3	131079410	131108124	2	neutral	AA	100	somatic	0	0.0854657004887846	0.242725143645329
3	136301256	136307409	1	loss	A	-1	somatic	0	0.00482158190245979	0.00958391173925111
3	141771273	141808191	2	neutral	AA	54.8601	somatic	0	0.713186722324253	0.769237633329985
3	146020945	146156311	2	neutral	AA	100	somatic	0	0.0552454197133557	0.167860580564266
3	146667010	146673163	0	loss	-	-1	germline	1	0.0143093499306577	0.0366388939363507
3	149458421	149491237	2	neutral	AA	100	germline	1	0.959914227038552	0.80402838886713
3	151774000	151823224	2	neutral	AA	54.5679	somatic	0	0.389481612589508	0.610026231132682
3	157754716	157760869	2	neutral	AA	100	somatic	0	0.995016306460449	0.928942278730742
3	158025448	158105437	2	neutral	AA	100	somatic	0	0.210485899384281	0.0906542439048329
3	161864920	161877226	2	neutral	AA	100	somatic	0	0.164672133351294	0.173938803610738
3	162412537	162424843	1	loss	A	-1	germline	1	7.52139425270982e-05	4.3461152044566e-05
3	162808380	162826839	1	loss	A	-1	germline	1	9.39870156881272e-07	1.72257496711126e-07
3	163628780	163710820	2	neutral	AA	31.2712	somatic	0	0.902938743204335	0.970747422803071
3	165702341	165788483	2	neutral	AA	93.3849	germline	1	0.763323861482502	0.373319085137833
3	169098797	169172633	2	neutral	AA	51.5771	somatic	0	0.277951728002143	0.128240383761093
3	172050186	172068645	2	neutral	AA	54.5678	somatic	0	0.871929189661604	0.984167859991623
3	175415877	175491764	2	neutral	AA	71.4209	somatic	0	0.062614718408173	0.236971836817447
3	182865109	182879466	2	neutral	AA	100	somatic	0	0.144580404751105	0.323726181074627
3	185299646	185309901	2	neutral	AA	36.3786	somatic	0	0.718254364707375	0.532644799836025
3	186115944	186126199	2	neutral	AA	100	somatic	0	0.797678652148519	0.639775297571985
3	188689949	188696102	2	neutral	AA	100	somatic	0	0.128367053819056	0.225157182126054
3	190018997	190023099	0	loss	-	-1	germline	1	0.0143117962752219	0.0366410327083
3	196746277	196764736	2	neutral	AA	62.1112	somatic	0	0.24965733501477	0.307594018187871
3	197693839	197779981	2	neutral	AA	100	somatic	0	0.0456017434617904	0.0178582170415093
4	127162	133315	1	loss	A	-1	germline	1	0.00568693628405164	0.00932978506356197
4	553770	555821	4	gain	-	-1	germline	1	0.0832835188445566	0.270069996197826
4	7863534	7865585	5	gain	-	-1	germline	1	0.0832780177580453	0.270060442465082
4	40293946	40295997	5	gain	-	-1	germline	1	0.0832775176738675	0.270059573956157
4	42761299	42767452	1	loss	A	-1	germline	1	0.00324738246218468	0.00583390650859039
4	61072627	61076729	0	loss	-	-1	germline	1	0.0143103757721752	0.0366434092496912
4	70620032	70624134	1	loss	A	-1	germline	1	0.0186551233550632	0.0499794060594131
4	74560003	74564105	1	loss	A	-1	somatic	0	0.0164060487701486	0.0429399154682152
4	91152593	91160797	1	loss	A	-1	somatic	0	0.00154725457024923	0.00162281731795899
4	106135148	106143352	1	loss	A	-1	germline	1	0.00171470183009493	0.00194538259066102
4	107142189	107154495	1	loss	A	-1	germline	1	4.92963936084731e-05	3.0919580798372e-05
4	114253006	114261210	1	loss	A	-1	germline	1	0.00161771485475436	0.00166253658552606
4	166664260	166668362	1	loss	A	-1	somatic	0	0.0214338506089254	0.0587479298087183
4	172066594	172072747	1	loss	A	-1	somatic	0	0.00551126144243237	0.00965833370275504
4	173481784	173485886	1	loss	A	-1	somatic	0	0.0168902412677502	0.0440783412749858
4	185519103	185523205	1	loss	A	-1	germline	1	0.020023272242837	0.054284328922137
4	189270382	189278586	1	loss	A	-1	germline	1	0.00126330878948237	0.00161045158980955
5	192794	198947	2	neutral	AA	21.9036	somatic	0	0.364566426375211	0.455425678841785
5	414302	416353	5	gain	AAABB	24.7365	germline	1	0.0832775176738675	0.270059573956157
5	756819	777329	4	gain	AABB	8.77243	somatic	0	0.000107624305554936	9.08668751994357e-05
5	818349	859369	2	neutral	AA	13.6426	somatic	0	0.837857711440151	0.924405333591889
5	3802554	3823064	2	neutral	AA	100	somatic	0	0.646906566382571	0.345258199921682
5	10316530	10349346	2	neutral	AA	57.0417	somatic	0	0.84528901696214	0.887633623503047
5	13333551	13362265	2	neutral	AA	44.3791	somatic	0	0.656791505217661	0.709712096557195
5	26808621	26812723	2	neutral	AA	100	somatic	0	0.215698108404366	0.366047551045279
5	28476084	28480186	2	neutral	AA	100	somatic	0	0.863238256328306	0.836958990069394
5	29784622	30061507	2	neutral	AA	19.9298	somatic	0	0.168182479030896	0.0685450598092278
5	46270560	46276713	1	loss	A	-1	germline	1	0.00482100958090609	0.011558007126805
5	51890300	51929269	2	neutral	AA	15.6988	somatic	0	0.000665005571789863	0.000879339557950609
5	52909647	52913749	1	loss	A	-1	germline	1	0.0208265035649018	0.0533005119272056
5	74039049	74043151	2	neutral	AA	100	somatic	0	0.855980451403896	0.993330982784172
5	74886112	74945591	2	neutral	AA	36.4341	somatic	0	0.0307510128928788	0.0278810765148254
5	75665492	75683951	2	neutral	AA	36.4741	somatic	0	0.476722589300853	0.573545586055742
5	85838452	85844605	2	neutral	AA	100	somatic	0	0.377093824906939	0.473609840628579
5	91400764	91439733	2	neutral	AA	31.0846	somatic	0	0.324089828893107	0.302979946066876
5	106545348	106551501	2	neutral	AA	100	somatic	0	0.669725218095639	0.917744844329012
5	109371626	109388034	2	neutral	AA	100	somatic	0	0.063906579145658	0.304490307197149
5	109716194	109818744	2	neutral	AA	32.0653	somatic	0	0.107036381804431	0.0365084883438727
5	118537545	118545749	1	loss	A	-1	somatic	0	0.00556691933614336	0.00962763655920773
5	120791594	120904399	2	neutral	AA	20.4351	somatic	0	0.228188101748721	0.0397565363251233
5	126140602	126157010	2	neutral	AA	100	somatic	0	0.0541479121453341	0.1008464502416
5	128759729	128767933	2	neutral	AA	36.5075	somatic	0	0.332537541753346	0.323297549125814
5	137515448	137521601	1	loss	A	-1	somatic	0	0.00473482395380826	0.0095393157086221
5	143481807	143485909	1	loss	A	-1	germline	1	0.0175931017479039	0.0425352078718184
5	156050335	156060590	1	loss	A	-1	germline	1	0.000323902890404891	0.000245791578899257
5	158304384	158433597	2	neutral	AA	100	somatic	0	0.484247047231435	0.255623594222319
5	160195406	160215916	2	neutral	AA	55.0713	somatic	0	0.327726145748195	0.463516270768087
5	160238477	160242579	2	neutral	AA	100	germline	1	0.613132423190117	0.656218468704654
5	167240591	167246744	2	neutral	AA	54.5678	somatic	0	0.13804980885133	0.332641692634597
5	169588986	169599241	2	neutral	AA	54.9881	somatic	0	0.616941401614368	0.591391499616644
5	178584672	178586723	6	gain	AAAABB	7.19491	germline	1	0.0832770175921222	0.27005870544927
5	178820537	178830792	2	neutral	AA	100	germline	1	0.213840573991976	0.262480227222928
5	180949475	181002801	1	loss	A	-1	germline	1	6.65300266075251e-17	0
6	256375	381486	4	gain	-	-1	germline	1	1.0051379663543e-39	0
6	19041484	19049688	1	loss	A	-1	germline	1	0.00127028083348773	0.00140318744753753
6	23742376	23746478	1	loss	A	-1	germline	1	0.0146887651882642	0.0377724907683475
6	27661837	27692602	3	gain	-	-1	germline	1	2.00473121754557e-11	1.94955163124177e-13
6	32489891	32666277	1	loss	A	-1	germline	1	1.7030232642554e-20	0
6	35785848	35798154	3	gain	-	-1	germline	1	2.22028795320473e-05	1.23553113292596e-05
6	51201164	51203215	0	loss	-	-1	germline	1	0.0832760174359295	0.270056968441604
6	54062309	54070513	1	loss	A	-1	germline	1	0.00161879293529047	0.00167902010025878
6	60231717	60239921	3	gain	-	-1	germline	1	0.000533104999218292	0.000672144778021577
6	73883173	73893428	1	loss	A	-1	germline	1	0.000292500530870451	0.000270599485018397
6	76387444	76389495	0	loss	-	-1	germline	1	0.083267016468054	0.270041335739683
6	93872219	93880423	1	loss	A	-1	germline	1	0.00106026549242937	0.00121463346255657
6	95876046	95894505	2	neutral	AA	100	somatic	0	0.609828833838679	0.651666981788663
6	102392073	102443348	2	neutral	AA	63.0692	somatic	0	0.514262351649642	0.780600702182217
6	103288360	103315023	1	loss	A	-1	germline	1	2.28685859426814e-08	9.65871715941091e-10
6	103760090	103766243	2	neutral	AA	100	somatic	0	0.136077531814858	0.193727935844295
6	108883488	108893743	2	neutral	AA	100	somatic	0	0.446741394215651	0.592089429645401
6	114773960	114845745	2	neutral	AA	100	somatic	0	0.602435043549757	0.65848895841562
6	118570361	118715982	2	neutral	AA	9.92148	germline	1	0.568888148670253	0.234705576157665
6	118732390	118742645	2	neutral	AA	54.5678	somatic	0	0.116228739129346	0.116309781821895
6	119101570	119105672	2	neutral	AA	100	somatic	0	0.404005196875875	0.741771388696592
6	120896195	120965929	2	neutral	AA	29.9202	somatic	0	0.205044976076335	0.271820611339667
6	123599413	123615821	2	neutral	AA	100	somatic	0	0.72079495889184	0.980196391794153
6	129740107	130172868	2	neutral	AA	10.2226	germline	1	0.237529430322611	0.156452081169545
6	131663945	131762393	2	neutral	AA	27.4176	somatic	0	0.597910418924735	0.467466044523021
6	134268715	134274868	1	loss	A	-1	somatic	0	0.00440485242085358	0.0102203880794639
6	136065391	136073595	2	neutral	AA	100	somatic	0	0.366240441015504	0.4293453371921
6	143971996	143976098	2	neutral	AA	100	somatic	0	0.0306700225083836	0.0640322602010936
6	153420953	153431208	3	gain	AAB	0.833173	germline	1	0.000107889270114311	9.11620072143737e-05
6	155763195	155771399	2	neutral	AA	100	somatic	0	0.896027774274039	0.987807845001904
6	156175446	156179548	2	neutral	AA	100	somatic	0	0.466752444164667	0.547399443009231
6	157313751	157315802	6	gain	AAAABB	7.55633	germline	1	0.0832770175921222	0.27005870544927
6	159202722	159342190	2	neutral	AA	9.7049	somatic	0	0.00207123034376623	0.00418936941749914
6	160816859	160857879	2	neutral	AA	5.06005	somatic	0	0.015972059120043	0.00340721721905823
6	165310600	165318804	1	loss	A	-1	germline	1	0.00108473473519658	0.0015563693739461
6	167074460	167078562	1	loss	A	-1	somatic	0	0.0214677207049336	0.0588542834008549
7	9760709	9766862	1	loss	A	-1	somatic	0	0.00526828429732304	0.00951271836853984
7	56367633	56369684	0	loss	-	-1	germline	1	0.083267016468054	0.270041335739683
7	61045964	61056219	3	gain	-	-1	germline	1	0.000107845344609544	9.1204876875306e-05
7	61097239	61962761	2	neutral	AA	2.30478	germline	1	0.403035352475028	0.327477009695243
7	62295023	62381165	3	gain	AAB	0.736522	germline	1	4.32146899925048e-09	2.48332254759731e-09
7	62401675	62405777	4	gain	-	-1	germline	1	0.0143102179461808	0.0366377057769131
7	62438593	62455001	2	neutral	AA	3.13541	somatic	0	0.000188461835048447	0.000395403925921634
7	67966038	67998854	2	neutral	AA	39.5607	somatic	0	0.0019421107905434	0.000291423751939024
7	70855897	70898968	4	gain	AAAB	1.56662	germline	1	2.35074739212095e-15	0
7	70898968	70901019	3	gain	AAB	31.2116	germline	1	0.0833385459010763	0.270165547094044
7	71034334	71106119	2	neutral	AA	21.8309	germline	1	0.0559314618981656	0.179087635542685
7	79689554	79779798	3	gain	AAB	54.8361	germline	1	3.15559607044601e-29	0
7	85559516	85606689	2	neutral	AA	100	germline	1	0.788474960276217	0.896748883630121
7	86265060	86301978	2	neutral	AA	54.5678	somatic	0	0.50261444041886	0.607274015951082
7	87309019	87319274	1	loss	A	-1	germline	1	0.000195365320561356	0.000207400289774728
7	100948169	100956373	3	gain	AAB	0.809294	germline	1	0.000533230234579219	0.000672415095968826
7	100956373	100960475	9	gain	AAAAAABBB	23.6669	germline	1	0.0143093499306577	0.036636517651185
7	100960475	100976883	3	gain	AAB	0.751492	germline	1	1.12002896604964e-06	4.76682946892737e-07
7	101645509	101688580	2	neutral	AA	100	somatic	0	0.21244294788154	0.413441882886773
7	105279881	105357819	2	neutral	AA	100	somatic	0	3.22199576055088e-05	6.85170318370787e-07
7	127328131	127362998	2	neutral	AA	72.2286	somatic	0	0.0481584437763209	0.0931572324139961
7	143846885	143850987	4	gain	AAAB	58.4335	germline	1	0.0143110070915074	0.0366391315722869
7	152188302	152401606	2	neutral	AA	51.8938	somatic	0	0.110489140861504	0.183256165615561
7	152401606	152407759	8	gain	AAAAAABB	1.11945	germline	1	0.00270080949450406	0.004958686110068
7	152407759	152418014	2	neutral	AA	3.86294	germline	1	0.73440995657807	0.905015004349419
8	644014	650167	1	loss	A	-1	germline	1	0.0150821027275793	0.0389729749652977
8	4264029	4268131	1	loss	A	-1	somatic	0	0.0205490263525451	0.0558712181893314
8	6111980	6116082	0	loss	-	-1	germline	1	0.014881001183793	0.0383673949545206
8	11251786	11270245	2	neutral	AA	100	germline	1	0.940858342567011	0.993119213308057
8	11387152	11391254	1	loss	A	-1	somatic	0	0.021518274723861	0.0584088481716212
8	16235716	16264430	2	neutral	AA	54.5678	somatic	0	0.865140726723968	0.964502256561907
8	25114495	25132954	1	loss	A	-1	germline	1	4.50797800016236e-07	1.16966268337571e-07
8	25208841	25210892	0	loss	-	-1	germline	1	0.083267016468054	0.270041335739683
8	26211780	26222035	2	neutral	AA	100	somatic	0	0.0264230054238862	0.107784184668223
8	26548144	26568654	2	neutral	AA	54.5678	somatic	0	0.272414795251257	0.523833189669819
8	34932632	34949040	2	neutral	AA	36.3786	somatic	0	0.586436534738939	0.857915042163885
8	36987734	37010295	2	neutral	AA	54.5877	germline	1	0.0142036208796515	0.0104716311801522
8	37073876	37184630	2	neutral	AA	18.2045	somatic	0	0.078606161001127	0.13604850468304
8	38072713	38078866	1	loss	A	-1	somatic	0	0.00920890571530788	0.0176807036047946
8	42332640	42336742	1	loss	A	-1	somatic	0	0.0158299488684298	0.0406185030624577
8	43237131	43241233	8	gain	AAAAABBB	1.14586	germline	1	0.0143095866575578	0.0366367552736336
8	43241233	43243284	5	gain	AAABB	100	germline	1	0.0832780177580453	0.270060442465082
8	52573283	52710700	2	neutral	AA	96.409	somatic	0	0.377382427073892	0.509237205753023
8	54823230	54853995	2	neutral	AA	54.5678	somatic	0	0.833936915987777	0.434548604719534
8	74449249	74455402	1	loss	A	-1	somatic	0	0.00759563779914075	0.0126036711863379
8	95229981	95289460	2	neutral	AA	54.5678	somatic	0	0.678083650974267	0.953248748747931
8	104545623	104549725	1	loss	A	-1	somatic	0	0.0289078782794481	0.0567683991637634
8	111039089	111123180	2	neutral	AA	12.3945	somatic	0	0.370542137915269	0.715351613226361
8	115159548	115235435	2	neutral	AA	54.5678	somatic	0	0.326831988212784	0.626348010759382
8	120916705	120920807	1	loss	A	-1	somatic	0	0.0237895922336237	0.0662940292268333
8	121298191	121312548	2	neutral	AA	100	germline	1	0.992328921020206	0.588963850179798
8	122323691	122387272	2	neutral	AA	36.3786	somatic	0	0.0465928380524024	0.027631239486625
8	136147431	136151533	1	loss	A	-1	somatic	0	0.0249525737611209	0.05641185278841
8	139960240	139964342	1	loss	A	-1	somatic	0	0.0268120571010193	0.0588628848395033
8	142177371	142448103	2	neutral	AA	24.5073	germline	1	0.000830991592136386	0.00503653824556349
8	143619224	143631530	1	loss	A	-1	germline	1	0.000182422490579647	0.000174459815499906
8	144123770	144127872	4	gain	AAAB	49.9142	germline	1	0.0143117962752219	0.0366424586169541
8	144513460	144767784	2	neutral	AA	20.3196	somatic	0	0.04752939756675	0.0539697384669335
9	5716137	5804330	3	gain	-	-1	germline	1	6.48772522835703e-28	0
9	21650356	21656509	1	loss	A	-1	germline	1	0.00592599549068917	0.00951070880782723
9	22495368	22501521	1	loss	A	-1	germline	1	0.0061849974615804	0.00979465498305965
9	23362941	23377298	1	loss	A	-1	germline	1	2.07237392438722e-05	7.20679723598128e-06
9	40913348	40915399	6	gain	-	-1	germline	1	0.0832765175128096	0.270057836944422
9	40923603	40929756	6	gain	-	-1	germline	1	0.00270088138424659	0.00495873435360561
9	60518857	68634664	2	neutral	AA	100	somatic	0	0.00817813769502782	0.0538592938139414
9	69122802	69128955	1	loss	A	-1	germline	1	0.00557570321062261	0.00814354344717894
9	71132782	71143037	2	neutral	AA	54.5678	somatic	0	0.840369467893555	0.822948101691147
9	71988049	72002406	2	neutral	AA	100	somatic	0	0.0454250455025878	0.216131124252784
9	72024967	72037273	2	neutral	AA	7.79542	somatic	0	0.113738272146002	0.188533012210564
9	73895479	73959060	2	neutral	AA	100	somatic	0	0.204415863559077	0.326008625127014
9	77154518	77162722	3	gain	AAB	10.6297	germline	1	0.000533973861764048	0.000674047886492946
9	84700147	84706300	2	neutral	AA	100	somatic	0	0.927631709931781	0.986892711497965
9	91505365	91636629	2	neutral	AA	57.9903	somatic	0	0.608818011122682	0.825062434490656
9	93098992	93103094	2	neutral	AA	100	somatic	0	0.576519507835238	0.574294653840963
9	94165512	94503927	2	neutral	AA	32.1666	somatic	0	0.115091378769386	0.169239534967987
9	95012575	95016677	2	neutral	AA	100	somatic	0	0.275071098860583	0.641079510961557
9	101953159	101961363	1	loss	A	-1	germline	1	0.00122176551161239	0.00149413179446378
9	103011475	103015577	1	loss	A	-1	germline	1	0.0208523989662307	0.0569061275138099
9	105905436	105917742	2	neutral	AA	100	somatic	0	0.319537393980573	0.273472417434923
9	115819970	115828174	3	gain	AAB	14.5629	germline	1	0.000533422315376894	0.000672249405139436
9	116837266	116853674	2	neutral	AA	100	germline	1	0.366214043542011	0.593143862343548
9	119608167	119657391	2	neutral	AA	50.4838	somatic	0	0.0590636192150937	0.113060320144797
9	126702576	126718984	2	neutral	AA	100	germline	1	0.431180746802944	0.628664696259727
9	127937278	128037777	2	neutral	AA	32.2837	somatic	0	0.0501892418870117	0.0670014601382349
9	128648975	128653077	1	loss	A	-1	germline	1	0.0194816561662524	0.0525648027658925
9	129424253	129444763	3	gain	AAB	0.283424	germline	1	5.73601272607298e-08	9.97920635015248e-09
9	131741883	131745985	3	gain	AAB	100	germline	1	0.014322059157513	0.0366633775223916
9	135117829	135128084	2	neutral	AA	22.1174	somatic	0	0.460757146558494	0.662433937880639
9	137326756	137328807	6	gain	AAAABB	5.73776	germline	1	0.0832770175921222	0.27005870544927
10	38525984	38530086	13	gain	-	-1	germline	1	0.0143090343001648	0.0366362800300848
10	38573157	38577259	3	gain	-	-1	germline	1	0.484377428757511	0.699503670470573
10	38577259	38581361	4	gain	-	-1	germline	1	0.0143109281752473	0.0366398444881787
10	38813124	38835685	4	gain	-	-1	germline	1	9.23871973981032e-09	5.59438162461845e-10
10	41729646	41731697	2	neutral	AA	100	germline	1	0.10972623652036	0.313345986074318
10	41836298	41842451	2	neutral	AA	2.47062	germline	1	0.711762142861344	0.796037314560368
10	41856808	41914236	28	gain	AAAAAAAAAAAAAAAAAAABBBBBBBBB	19.0176	germline	1	9.22306095227508e-09	5.58361468172563e-10
10	42299824	42322385	2	neutral	AA	1.02497	somatic	0	6.54027170497172e-08	3.72156210515229e-07
10	44955869	44980481	2	neutral	AA	36.3786	somatic	0	0.00677579084258808	0.0223555339543949
10	46514629	46559751	4	gain	AABB	0.348578	germline	1	2.07652124644721e-15	0
10	53539304	53641854	2	neutral	AA	86.6401	somatic	0	0.201081834299193	0.180888098152974
10	57497734	57544907	2	neutral	AA	30.9037	germline	1	0.915090644865365	0.975333989958352
10	65547909	65556113	1	loss	A	-1	germline	1	0.00124228378138811	0.00152423389816903
10	67726071	67728122	0	loss	-	-1	germline	1	0.083267016468054	0.270041335739683
10	91872494	91876596	1	loss	A	-1	somatic	0	0.0224136708643398	0.0615364063031399
10	98517734	98573111	2	neutral	AA	100	somatic	0	0.47621575869458	0.796423618787236
10	112351729	112357882	1	loss	A	-1	somatic	0	0.00602639783192164	0.0100787072068441
10	115337985	115342087	2	neutral	AA	100	somatic	0	0.185291282753327	0.550316561511413
10	116488596	116515259	2	neutral	AA	100	somatic	0	0.251939709902842	0.336585483176606
10	122891818	122936940	2	neutral	AA	100	somatic	0	0.826080202622603	0.947602686040709
10	123324579	123338936	1	loss	A	-1	germline	1	1.90706325639756e-05	7.5941674332336e-06
10	128462334	128464385	3	gain	AAB	37.8201	germline	1	0.0832975229385048	0.270094315903481
10	128464385	128466436	7	gain	AAAABBB	37.4642	germline	1	0.0832765175128096	0.270057836944422
10	131622925	131624976	0	loss	-	-1	germline	1	0.0832675165011487	0.270042204205793
10	132363336	132365387	6	gain	AAAABB	27.2404	germline	1	0.0832770175921222	0.27005870544927
11	2518628	2526832	2	neutral	AA	100	somatic	0	0.994878949468531	0.637988234140344
11	6327335	6392967	2	neutral	AA	100	somatic	0	0.478974323681376	0.501078102838409
11	6725229	6872901	2	neutral	AA	100	somatic	0	0.276240897270665	0.204124046640257
11	7047236	7061593	2	neutral	AA	100	somatic	0	0.272075519126903	0.445900991940525
11	7416416	7420518	2	neutral	AA	100	somatic	0	0.491844264933212	0.632461830105724
11	10829280	10833382	2	neutral	AA	100	somatic	0	0.368612511951127	0.798023990818537
11	12330612	12377785	2	neutral	AA	66.0908	somatic	0	0.900292395447968	0.995902513585309
11	18922526	18940985	3	gain	AAB	2.27039	germline	1	2.04472761214406e-07	3.05985130566455e-08
11	25418043	25459063	2	neutral	AA	27.4085	somatic	0	0.658100836819012	0.872584311723403
11	35199262	35299761	2	neutral	AA	91.2058	somatic	0	0.0517018639700736	0.0478272640991688
11	38726982	38741339	2	neutral	AA	100	somatic	0	0.487636258758266	0.751876703863144
11	41895777	42016786	2	neutral	AA	100	somatic	0	0.480694157462158	0.735287009000094
11	42947940	42949991	4	gain	-	-1	germline	1	0.0832815184154042	0.270066522084648
11	47901105	47935972	2	neutral	AA	37.5957	somatic	0	0.00120834940310744	0.00570787996514988
11	50175664	50177715	0	loss	-	-1	germline	1	0.0832665164373918	0.270040467275612
11	50680210	50813525	2	neutral	AA	1.75005	somatic	0	0.376128355494934	0.141968269195975
11	50813525	54542243	2	neutral	AA	-1	somatic	0	NA	NA
11	54542243	54755547	2	neutral	AA	6.93354	somatic	0	0.00404385246267054	0.00920745232877829
11	55116523	55124727	1	loss	A	-1	germline	1	0.00138028694083236	0.00159727330339576
11	55221124	55260093	2	neutral	AA	6.25433	somatic	0	0.117482872458032	0.334107610603564
11	55598508	55684650	1	loss	A	-1	germline	1	2.31543864900217e-23	0
11	61115698	61150565	2	neutral	AA	28.6581	somatic	0	0.0442207653863705	0.123314605947506
11	62256054	62323737	2	neutral	AA	36.3786	somatic	0	0.779611318484161	0.688250750121062
11	81789778	81808237	1	loss	A	-1	germline	1	1.69882076001931e-06	2.02215536537764e-07
11	87975594	87977645	1	loss	A	-1	germline	1	0.0833012743589746	0.2701012646844
11	88769331	89177480	2	neutral	AA	82.8096	somatic	0	0.284257737118761	0.489100032903336
11	96565182	96567233	1	loss	A	-1	germline	1	0.0833065265775505	0.27010995084406
11	107367799	107371901	1	loss	A	-1	germline	1	0.0170505051945138	0.0417399991491779
11	110530441	110538645	2	neutral	AA	100	somatic	0	0.324324933347181	0.486312208862329
11	118958000	119033887	2	neutral	AA	21.8272	somatic	0	0.0645376520456701	0.0706830782680918
11	122619035	122629290	2	neutral	AA	100	somatic	0	0.562341715977828	0.788986386771285
11	127879850	127881901	0	loss	-	-1	germline	1	0.0832675165011487	0.270042204205793
11	128222367	128240826	2	neutral	AA	54.5678	somatic	0	0.650800359755584	0.214534148018451
11	131264000	131268102	1	loss	A	-1	somatic	0	0.0196887576806805	0.0525589499814474
12	2254049	2256100	5	gain	-	-1	germline	1	0.0832775176738675	0.270059573956157
12	9483824	9510487	1	loss	A	-1	somatic	0	0.00122227620805343	0.00144414260670023
12	16266481	16268532	1	loss	A	-1	somatic	0	0.0833190329395664	0.270131667135229
12	18095973	18100075	1	loss	A	-1	somatic	0	0.0201262921970016	0.0542786457902722
12	30084068	30090221	1	loss	A	-1	somatic	0	0.0059906869508203	0.00924445707065336
12	34104028	34114283	1	loss	A	-1	germline	1	0.00190585770612871	0.00155549107626873
12	37309741	37315894	1	loss	A	-1	somatic	0	0.00531556182364371	0.00930543093478853
12	37596881	37600983	1	loss	A	-1	somatic	0	0.0222570254059186	0.0516470062534623
12	37615340	37623544	1	loss	A	-1	somatic	0	0.00101864266266691	0.00160360438171103
12	37892225	37918888	1	loss	A	-1	germline	1	4.24533051157949e-08	3.40515116104001e-09
12	39026428	39051040	2	neutral	AA	100	somatic	0	0.994684149069984	0.305091947279263
12	39711462	39715564	1	loss	A	-1	somatic	0	0.0223446711417305	0.0616407323040504
12	39758635	39775043	2	neutral	AA	54.5678	somatic	0	0.00125452014430796	0.00117126535743384
12	39859134	39865287	2	neutral	AA	100	somatic	0	0.500842502745398	0.367705341220342
12	40482638	40515454	2	neutral	AA	2.5504	somatic	0	0.00285695073208471	0.01856172047656
12	41001541	41020000	2	neutral	AA	54.5678	somatic	0	0.198135634039609	0.136948917492336
12	43095612	43157142	2	neutral	AA	27.2839	somatic	0	0.0050355788233636	0.00416251165894344
12	43866788	43881145	2	neutral	AA	100	somatic	0	0.776268341036279	0.814555469365283
12	46428487	46498221	2	neutral	AA	27.9062	somatic	0	0.609903503582595	0.866260270265384
12	52872729	52878882	2	neutral	AA	36.3786	germline	1	0.183928484174153	0.574957216478133
12	59540530	59552836	1	loss	A	-1	germline	1	9.10075546217139e-05	4.78354789935631e-05
12	67379452	67412268	2	neutral	AA	54.6166	germline	1	0.0553882901239302	0.033750424019636
12	69779122	69832448	2	neutral	AA	36.3788	somatic	0	0.88609779952076	0.93565665951462
12	70117537	70125741	3	gain	-	-1	germline	1	0.000532840703454898	0.000671708995996334
12	71063048	71089711	2	neutral	AA	100	germline	1	0.992735153834283	0.910044556729825
12	75257343	75267598	2	neutral	AA	100	somatic	0	0.33828431691319	0.619492302216389
12	79279354	79303966	2	neutral	AA	100	somatic	0	0.174011212398856	0.472390641698449
12	79761339	79769543	3	gain	AAB	12.6659	germline	1	0.000563428336748678	0.000767424198244382
12	80803247	80903746	2	neutral	AA	17.4949	somatic	0	0.267324064672344	0.258235547741884
12	82919879	83006021	2	neutral	AA	65.3398	somatic	0	0.73681430820065	0.864063179109415
12	88701648	88703699	0	loss	-	-1	germline	1	0.0832745172198849	0.27005436294541
12	90092226	90094277	0	loss	-	-1	somatic	0	0.0832680165366758	0.270043072673942
12	108190250	108210760	2	neutral	AA	100	somatic	0	0.232342418533053	0.47986878663159
12	114704226	114716532	2	neutral	AA	27.2839	somatic	0	0.0102881722332351	0.0153494884972408
12	118847246	118857501	2	neutral	AA	36.3786	somatic	0	0.418062180304832	0.441539729524372
12	120924909	120929011	1	loss	A	-1	somatic	0	0.0211342178336314	0.0578002631578319
12	123511220	123519424	2	neutral	AA	54.5678	somatic	0	0.132542768391522	0.192147394203703
12	124058837	124093704	2	neutral	AA	27.3026	somatic	0	0.681301946402648	0.883996129465834
12	124940767	124948971	2	neutral	AA	54.5678	germline	1	0.777519337617954	0.954087495679758
12	129941105	129963666	2	neutral	AA	36.3786	somatic	0	0.5332045271044	0.749920287410908
12	130720485	130728689	2	neutral	AA	100	somatic	0	0.853737636429116	0.688615695477087
12	130872259	130880463	2	neutral	AA	100	somatic	0	0.606353465967259	0.883365976269573
12	131887504	131914167	2	neutral	AA	27.2839	somatic	0	0.618227738942537	0.468076569116276
13	18233390	18237492	1	loss	A	-1	germline	1	0.0203022197354383	0.0458449492369389
13	21375522	21377573	4	gain	-	-1	germline	1	0.0832840189579264	0.270070864731218
13	22019536	22023638	0	loss	-	-1	germline	1	0.0143081663479757	0.0366367552736312
13	33562564	33570768	1	loss	A	-1	germline	1	0.00118714006353828	0.00139764793281405
13	37498433	37510739	1	loss	A	-1	germline	1	6.05901869290108e-05	3.87579973084584e-05
13	38482913	38487015	1	loss	A	-1	somatic	0	0.0236848985429577	0.0589173856667263
13	48959421	48963523	1	loss	A	-1	somatic	0	0.0209699378027857	0.0570291424783648
13	50493569	50501773	1	loss	A	-1	germline	1	0.0254398118185591	0.0565491837332975
13	63029281	63060046	3	gain	-	-1	somatic	0	2.91454211997255e-07	2.61259572587047e-06
13	63060046	63068250	4	gain	-	-1	germline	1	0.000532551509140604	0.000671752562276473
13	64768529	64770580	0	loss	-	-1	germline	1	0.0832730170257334	0.270051757467566
13	72271087	72273138	0	loss	-	-1	germline	1	0.0832795180251747	0.270063048004083
13	82591719	82597872	1	loss	A	-1	germline	1	0.0072894402815756	0.0093921326607791
13	87665893	87676148	2	neutral	AA	100	somatic	0	0.149549014208922	0.129529792779644
13	88837014	88871881	2	neutral	AA	54.5678	germline	1	0.0952900484812675	0.158366558564409
13	89481028	89483079	2	neutral	AA	54.5678	somatic	0	0.75227188921789	0.875840132821663
13	89526150	89528201	2	neutral	AA	100	somatic	0	0.532012278990694	0.743612057218424
13	89874820	89876871	2	neutral	AA	100	somatic	0	0.167583831316666	0.394986738746941
13	93004646	93006697	2	neutral	AA	100	somatic	0	0.955741886178768	0.952772094936174
13	93338959	93369724	2	neutral	AA	100	somatic	0	0.292878581363639	0.314993628577665
13	94501876	94503927	1	loss	A	-1	somatic	0	0.126709773186032	0.338838379900775
13	95951933	96074993	2	neutral	AA	27.4499	germline	1	0.570571435883469	0.474731999087818
13	96111911	96118064	2	neutral	AA	100	somatic	0	0.624278225223924	0.478666097829982
13	97976270	97986525	2	neutral	AA	100	somatic	0	0.818067710619209	0.678375257138949
13	100433368	100435419	2	neutral	AA	100	somatic	0	0.0924536564327716	0.285651063399083
13	104492297	104494348	2	neutral	AA	100	somatic	0	0.436634482388738	0.670103770696164
13	109020905	109025007	1	loss	A	-1	germline	1	0.0268546192846105	0.0548171276940352
13	109496737	109498788	2	neutral	AA	36.4385	somatic	0	0.998973653012831	0.963713886324546
13	109630052	109632103	2	neutral	AA	100	somatic	0	0.549712519167392	0.7561142766446
13	110196128	110198179	2	neutral	AA	100	somatic	0	0.321140365610755	0.566491804368086
13	110419687	110421738	2	neutral	AA	100	somatic	0	0.967794219230873	0.95600352794808
13	111258546	111260597	2	neutral	AA	100	somatic	0	0.930738186210579	0.945606317311488
13	111307770	111315974	2	neutral	AA	100	germline	1	0.269821794047321	0.316934753826871
13	112657328	112659379	2	neutral	AA	100	somatic	0	0.0905292410337406	0.28243506590527
13	112843969	112884989	2	neutral	AA	3.22336	somatic	0	0.0361042882966918	0.0518522136487226
13	113157772	113161874	2	neutral	AA	54.6293	somatic	0	0.320392105600523	0.386000652516026
13	113377229	113383382	1	loss	A	-1	germline	1	0.00583384032472056	0.00948775726205031
13	113617196	113625400	2	neutral	AA	59.2977	somatic	0	0.0476238781761813	0.134112116081965
13	114080722	114088926	2	neutral	AA	100	somatic	0	0.364807900818751	0.728734600401406
13	114154558	114156609	0	loss	-	-1	germline	1	0.083282518625115	0.27006825913715
14	0	16092146	4	gain	AAAB	-1	somatic	0	NA	NA
14	16092146	16094197	11	gain	-	-1	germline	1	0.0832740171527352	0.270053494450766
14	16094197	16096248	4	gain	-	-1	germline	1	0.0832880199524636	0.27007781307175
14	16096248	19728569	4	gain	AAAB	-1	somatic	0	0.466162197254258	0.314619919071832
14	19728569	19954179	4	gain	AAAB	0.699994	germline	1	1.75603463656054e-34	0
14	34348097	34350148	0	loss	-	-1	somatic	0	0.0832730170257334	0.270051757467566
14	34567554	34596268	2	neutral	AA	47.8467	somatic	0	0.0184550314131094	0.051692029987808
14	38571106	38761849	2	neutral	AA	54.5681	somatic	0	0.311450152898663	0.027558916274907
14	41141009	41200488	1	loss	A	-1	germline	1	2.51795203584105e-17	0
14	47238632	47248887	1	loss	A	-1	germline	1	0.00118107668677188	0.00131823726265257
14	50187970	50220786	2	neutral	AA	100	somatic	0	0.00615252342231302	0.0123446633125778
14	61349512	61355665	1	loss	A	-1	germline	1	0.00526173089691271	0.00924488279557023
14	64536766	64547021	2	neutral	AA	36.3786	somatic	0	0.325135729354099	0.500126631687898
14	70351351	70412881	2	neutral	AA	100	somatic	0	0.979392487286938	0.652775395950651
14	72839214	72876132	2	neutral	AA	100	somatic	0	0.188069304239184	0.331753168315096
14	72890489	72917152	2	neutral	AA	18.6055	somatic	0	0.0905193859720734	0.140531716920021
14	74242098	74254404	2	neutral	AA	36.3851	germline	1	0.0382913635820678	0.0365092202752614
14	78177967	78241548	2	neutral	AA	100	somatic	0	0.00737384748769567	0.00553236578557581
14	81123203	81133458	3	gain	AAB	100	germline	1	0.00010778754435671	9.09744930381873e-05
14	99926771	99928822	7	gain	AAAAABB	77.474	germline	1	0.0832765175128096	0.270057836944422
14	101723447	101725498	1	loss	A	-1	somatic	0	0.0832970227594488	0.270093447315031
14	105329105	105425502	2	neutral	AA	27.7382	somatic	0	0.158597750450784	0.228886037423959
15	17025351	17027402	4	gain	-	-1	germline	1	0.0832895203655557	0.27008041873309
15	17080728	17082779	14	gain	-	-1	germline	1	0.0832740171527352	0.270053494450766
15	20341818	20343869	3	gain	-	-1	germline	1	0.0833020246594911	0.2701021332912
15	20343869	20672029	5	gain	-	-1	germline	1	9.88227948003228e-17	0
15	22224636	22226687	3	gain	-	-1	germline	1	0.0835699812140493	0.270567130285803
15	22226687	22275911	3	gain	AAB	3.41598	germline	1	2.3557105534271e-07	6.57791920932738e-08
15	23453185	23467542	2	neutral	AA	35.2556	somatic	0	0.0120579546411943	0.0135241217257004
15	27307014	27309065	1	loss	A	-1	somatic	0	0.0833520570427176	0.270189004266843
15	34009682	34114283	2	neutral	AA	68.9011	somatic	0	0.00441013241333264	0.00509619617007806
15	40556474	40763625	2	neutral	AA	21.8607	somatic	0	6.69969332703218e-07	6.01638549968531e-06
15	43749881	43780646	2	neutral	AA	54.8213	somatic	0	0.0517142922232712	0.230655404426202
15	46079817	46094174	2	neutral	AA	54.5678	somatic	0	0.178046510803018	0.507670602155121
15	47269397	47359641	2	neutral	AA	27.4444	somatic	0	0.893509635299126	0.761836657051111
15	50928381	50948891	2	neutral	AA	14.6024	somatic	0	0.129278865539309	0.444312835690081
15	55799506	55805659	2	neutral	AA	100	somatic	0	0.820364899728706	0.962517850697748
15	57688477	57690528	1	loss	A	-1	somatic	0	0.0833670715032155	0.270215069535522
15	71415820	71421973	1	loss	A	-1	germline	1	0.00645494049679206	0.00914077299694582
15	72092650	72096752	1	loss	A	-1	germline	1	0.0159359581166808	0.0415022789401167
15	76592544	76602799	1	loss	A	-1	germline	1	0.00142873275371722	0.00141658329980898
15	77037611	77041713	1	loss	A	-1	germline	1	0.0206213260287988	0.0561642090401532
15	78821981	78879409	2	neutral	AA	53.68	somatic	0	0.000450419394996526	0.00122628344658271
15	85967665	85977920	1	loss	A	-1	germline	1	0.0010885321807614	0.00117066879006344
15	91228480	91298214	2	neutral	AA	100	somatic	0	0.00449097302707596	0.0431931013410344
15	91437682	91439733	1	loss	A	-1	somatic	0	0.0833040254876316	0.270105607738744
15	92801597	92840566	2	neutral	AA	36.3786	somatic	0	0.0119251822668412	0.0142610431171942
15	99875496	99881649	1	loss	A	-1	germline	1	0.00511750431745686	0.00931039997536853
15	100496949	100566683	2	neutral	AA	18.0043	somatic	0	0.0936501076186704	0.213150709195706
16	845012	847063	6	gain	AAABBB	35.7982	somatic	0	0.0832770175921222	0.27005870544927
16	1023449	1027551	4	gain	AABB	44.5192	somatic	0	0.0143132958300434	0.0366469743146514
16	2174060	2202774	2	neutral	AA	54.5883	germline	1	0.223859664477812	0.434133440325757
16	3345181	3478496	2	neutral	AA	56.7941	somatic	0	0.64567028881901	0.823944235195293
16	9775066	9779168	2	neutral	AA	100	somatic	0	0.269443214953945	0.332386311509279
16	11075400	11122573	2	neutral	AA	100	somatic	0	0.44565878011209	0.328041065706856
16	12115257	12275235	2	neutral	AA	38.9821	somatic	0	0.430556426721864	0.437610938517313
16	19857782	19886496	2	neutral	AA	54.5679	somatic	0	0.283055363110215	0.52532820496132
16	21523194	21582673	4	gain	AABB	2.12001	germline	1	4.25159369179832e-10	1.0249467941037e-11
16	21955955	22009281	2	neutral	AA	100	somatic	0	0.353936505846813	0.317984657097452
16	22614326	22696366	4	gain	AAAB	2.37827	germline	1	1.31646379959664e-26	0
16	22696366	22698417	4	gain	AABB	17.8388	germline	1	0.0832905206531144	0.270082155850845
16	34060957	34063008	7	gain	AAAAAAB	46.8451	germline	1	0.0832765175128096	0.270057836944422
16	34063008	34065059	22	gain	AAAAAAAAAAAAAABBBBBBBB	9.22599	germline	1	0.0832720169084618	0.27005002049254
16	34083518	34085569	12	gain	AAAAAAAAAAAA	33.1591	germline	1	0.0832740171527352	0.270053494450766
16	34085569	34095824	2	neutral	AA	17.8812	germline	1	0.994738123363425	0.9673879915525
16	34095824	34099926	7	gain	AAAAABB	4.50341	germline	1	0.0143096655672922	0.0366367552736336
16	34099926	34161456	2	neutral	AA	3.23786	somatic	0	0.32671374788397	0.305571218766933
16	34161456	34192221	2	neutral	AA	-1	somatic	0	0.0143110860081514	0.0366405574162073
16	34212731	34218884	2	neutral	AA	-1	somatic	0	NA	NA
16	34218884	34959295	2	neutral	AA	0.623933	somatic	0	6.00395408241364e-07	0.000109976494269137
16	36124263	36126314	5	gain	-	-1	germline	1	0.0832775176738675	0.270059573956157
16	46401824	46467456	2	neutral	AA	0.467427	germline	1	1.74015506683528e-05	5.80536810393939e-05
16	49658812	49667016	1	loss	A	-1	germline	1	0.00120646767292292	0.00160859938169944
16	55750282	56006657	2	neutral	AA	100	somatic	0	0.364168606385713	0.233981183337717
16	58119187	58137646	2	neutral	AA	18.5998	somatic	0	0.91909829136244	0.968037557648517
16	58264808	58270961	2	neutral	AA	100	somatic	0	0.41598666446653	0.596998561808895
16	58711926	58757048	2	neutral	AA	100	somatic	0	0.33388220021387	0.580301652976556
16	61064423	61082882	2	neutral	AA	100	germline	1	0.309087350300797	0.324282467987118
16	70150353	70162659	3	gain	AAB	2.5142	germline	1	2.21578838422711e-05	1.23212251961213e-05
16	70734888	70753347	2	neutral	AA	100	somatic	0	0.156633996187888	0.141752209640625
16	78337945	78352302	1	loss	A	-1	germline	1	1.61255465532621e-05	8.08749851533008e-06
16	78842491	78881460	2	neutral	AA	36.3788	somatic	0	0.126204723298575	0.111678850190213
16	79254742	79260895	2	neutral	AA	36.3786	somatic	0	0.331904317185533	0.471691847419113
16	79523423	79535729	2	neutral	AA	100	somatic	0	0.308730325412872	0.289348372279833
16	82218437	82261508	2	neutral	AA	27.2851	somatic	0	0.0208314102698822	0.0220994073909236
16	84509404	84517608	2	neutral	AA	100	somatic	0	0.893071740413385	0.975820096300318
16	84698096	84757575	2	neutral	AA	31.6903	somatic	0	0.489607907716706	0.457410615380515
16	86330692	86351202	2	neutral	AA	64.7144	somatic	0	0.118254586134851	0.241231038285533
16	87208520	87222877	2	neutral	AA	5.85127	somatic	0	0.257310562012504	0.463796173224492
16	89228755	89241061	2	neutral	AA	17.6448	somatic	0	0.0155589720212353	0.00957995066842332
17	2816023	2818074	1	loss	A	-1	somatic	0	0.0833015244585385	0.2701012646844
17	3972787	4413752	2	neutral	AA	47.8731	somatic	0	0.618009665164685	0.481072980167274
17	16818200	16820251	4	gain	AABB	30.3302	germline	1	0.0832835188445566	0.270069996197826
17	21291431	21303737	4	gain	AABB	0.219781	germline	1	2.21222437393076e-05	1.23044553526075e-05
17	21855456	21857507	6	gain	-	-1	germline	1	0.0832770175921222	0.27005870544927
17	21857507	21884170	3	gain	-	-1	germline	1	2.05844676791466e-09	1.63916413775667e-09
17	21884170	21894425	1	loss	A	-1	germline	1	0.000118773857344306	0.000123341881869354
17	21896476	21968261	0	loss	-	-1	germline	1	1.77487440882251e-24	0
17	21978516	21990822	8	gain	-	-1	somatic	0	0.00270080949450406	0.004958686110068
17	22124137	22154902	5	gain	AAABB	0.425329	germline	1	9.14597921304572e-11	1.38544731242973e-12
17	26781958	26808621	3	gain	-	-1	germline	1	6.10779215026283e-07	7.68649185600712e-06
17	26808621	26818876	4	gain	-	-1	germline	1	0.000532493131885461	0.000671630583367056
17	26822978	26827080	4	gain	-	-1	germline	1	0.0143119541165714	0.036641270356373
17	26827080	26843488	3	gain	-	-1	germline	1	0.000187102240418835	0.000328001410139445
17	26843488	26845539	1	loss	A	-1	somatic	0	0.083369073596791	0.270218545043332
17	26866049	26868100	8	gain	-	-1	germline	1	0.0832765175128096	0.270057836944422
17	26868100	26878355	3	gain	-	-1	germline	1	0.000260835190445042	0.00126982311586943
17	26878355	26880406	5	gain	-	-1	germline	1	0.0832780177580453	0.270060442465082
17	26935783	26939885	11	gain	AAAAAAABBBB	2.18501	germline	1	0.0143089553935012	0.0366358047919295
17	31070599	31263393	2	neutral	AA	100	somatic	0	0.0190002698326591	0.00669792760705124
17	41633249	41737850	2	neutral	AA	100	somatic	0	0.188559702188248	0.13847480280351
17	50674057	50721230	2	neutral	AA	54.5678	somatic	0	0.925163240699347	0.684230587521653
17	52665578	52784536	2	neutral	AA	98.2214	germline	1	0.925774659081492	0.6600965981422
17	53777220	53781322	1	loss	A	-1	somatic	0	0.0150848304844307	0.0379169665260894
17	57877169	58139697	2	neutral	AA	100	somatic	0	0.898484795750761	0.637903433785274
17	64745968	64942864	2	neutral	AA	100	somatic	0	0.644310790652004	0.73768620595054
17	77216048	77494984	2	neutral	AA	15.0064	somatic	0	0.204232741882541	0.21355361279605
17	78372812	78397424	2	neutral	AA	100	somatic	0	0.848891681356904	0.965903828010492
17	80583790	80604300	2	neutral	AA	38.7685	germline	1	0.813486315328727	0.926394575913227
17	80604300	80844267	2	neutral	AA	7.71228	somatic	0	1.27289707323133e-09	2.61613388063964e-07
18	24938109	24940160	1	loss	A	-1	somatic	0	0.0886803174658107	0.279319071332079
18	29593879	29597981	1	loss	A	-1	germline	1	0.022055640162091	0.0549153110926495
18	30490166	30492217	1	loss	A	-1	somatic	0	0.0835078133346952	0.270459303318433
18	40679534	40685687	1	loss	A	-1	germline	1	0.00494755127994074	0.00909033378822577
18	41284579	41288681	1	loss	A	-1	germline	1	0.0238327780503613	0.0555696496153448
18	41346109	41350211	1	loss	A	-1	somatic	0	0.027437137010441	0.072083131208738
18	42474159	42478261	1	loss	A	-1	somatic	0	0.0202705473040586	0.052571956932415
18	44078041	44080092	1	loss	A	-1	somatic	0	0.0907209172384974	0.282754591036364
18	47618067	47626271	2	neutral	AA	100	somatic	0	0.491477668049903	0.508279212171583
18	47847779	47851881	1	loss	A	-1	somatic	0	0.0266821363075926	0.0668111659778612
18	48922503	48940962	2	neutral	AA	100	somatic	0	0.591841472764111	0.486333092185219
18	49439355	49441406	1	loss	A	-1	somatic	0	0.0905105192359183	0.282401871743817
18	49738801	49826994	2	neutral	AA	2.46241	somatic	0	0.229650944934751	0.476085703214168
18	51164246	51180654	2	neutral	AA	22.3965	somatic	0	0.696906131023167	0.964228842418323
18	53229603	53231654	2	neutral	AA	100	somatic	0	0.77205486041753	0.885198197128416
18	53426499	53430601	1	loss	A	-1	somatic	0	0.0291396766125223	0.0572156673401647
18	53678772	53684925	1	loss	A	-1	germline	1	0.00729062450905832	0.00959553057262463
18	56260981	56265083	1	loss	A	-1	somatic	0	0.031066030911576	0.0825643029748475
18	57278277	57282379	1	loss	A	-1	germline	1	0.0157097756037082	0.0407716498188965
18	59226727	59255441	2	neutral	AA	34.2232	somatic	0	0.564113094754357	0.840562376971853
18	61833548	61841752	2	neutral	AA	100	somatic	0	0.245396430313295	0.421649669497875
18	63472297	63474348	1	loss	A	95.6104	somatic	0	0.12656531532216	0.338627636049498
18	64544970	64547021	1	loss	A	-1	somatic	0	0.0838939592340412	0.271128510255174
18	66056557	66064761	1	loss	A	-1	germline	1	0.00117937198271928	0.00153656784181289
18	66889263	66893365	2	neutral	AA	22.7861	somatic	0	0.0545295743231881	0.115617754493408
18	67186658	67582501	2	neutral	AA	13.4968	somatic	0	0.744767956814115	0.292665704995992
18	69262270	69272525	2	neutral	AA	100	somatic	0	0.021660293438894	0.0499602800903818
18	70082670	70177016	2	neutral	AA	100	somatic	0	0.0332412451051596	0.0558112351169868
18	72691542	72707950	2	neutral	AA	8.29459	somatic	0	0.922102100295267	0.870717448867786
18	73555013	73561166	2	neutral	AA	36.3786	somatic	0	0.725225643476524	0.930686492364374
18	74432841	74438994	2	neutral	AA	100	somatic	0	0.0867500792962583	0.172463415393632
18	74615380	74617431	3	gain	-	-1	germline	1	0.0832970227594488	0.27009344731504
18	75048141	75068651	2	neutral	AA	86.4325	germline	1	0.825472688746415	0.924223375727999
18	75103518	75130181	2	neutral	AA	82.2028	somatic	0	0.609937870488821	0.628294051384907
18	76241823	76260282	2	neutral	AA	54.8373	somatic	0	0.52201683516321	0.288594194776064
18	76775083	76793542	2	neutral	AA	9.84708	somatic	0	0.942368923797687	0.756163394024395
18	77099141	77101192	2	neutral	AA	100	somatic	0	0.657054319299897	0.824940176357169
18	78089774	78169763	2	neutral	AA	9.22649	somatic	0	0.065142932378205	0.180923276446577
18	78218987	78233344	2	neutral	AA	78.0407	somatic	0	0.60285140083507	0.755483061805134
18	78473311	78481515	2	neutral	AA	18.1916	somatic	0	0.964963119774187	0.959291470258123
18	79199365	79201416	3	gain	AAB	22.9582	somatic	0	0.0833090277282962	0.270114294000357
18	79519321	79523423	1	loss	A	-1	somatic	0	0.0289293754405114	0.0563969953750119
18	80214610	80259732	2	neutral	AA	25.5311	germline	1	1.61457717984832e-07	1.10680232545679e-06
19	512750	549668	2	neutral	AA	30.3471	somatic	0	0.0938446789836807	0.153697305081036
19	648116	682983	2	neutral	AA	100	somatic	0	0.423568776688259	0.558867203732916
19	2377109	2393517	2	neutral	AA	27.3481	somatic	0	0.00196922093626924	0.0110897984345879
19	2951389	2959593	2	neutral	AA	54.5678	somatic	0	0.282087071798815	0.377942381068241
19	2959593	2961644	1	loss	A	-1	somatic	0	0.126528349151555	0.338573691577317
19	4024062	4044572	2	neutral	AA	6.56297	germline	1	0.560965699688279	0.849395475246535
19	5461813	5675117	2	neutral	AA	23.3345	somatic	0	0.0231293343510556	0.0160711716067987
19	7449232	7451283	14	gain	AAAAAAAAABBBBB	8.09045	germline	1	0.0832740171527352	0.270053494450766
19	8884932	8917748	2	neutral	AA	3.8726	germline	1	0.320954133256605	0.770583476973012
19	8917748	8921850	1	loss	A	-1	germline	1	0.0674021539966393	0.20727113610109
19	9602782	9621241	2	neutral	AA	36.3787	somatic	0	0.083844834981306	0.118584434305453
19	13456611	13462764	2	neutral	AA	100	somatic	0	0.377648527180703	0.76373254104964
19	13663762	13665813	1	loss	A	-1	somatic	0	0.0887429457193779	0.279424999474709
19	13735547	13743751	2	neutral	AA	7.77318	somatic	0	0.305488606195154	0.604998694669765
19	14268807	14270858	1	loss	A	-1	somatic	0	0.126002667919438	0.337806877762558
19	14270858	14315980	2	neutral	AA	34.9715	somatic	0	0.234351155763445	0.298850776682159
19	15673742	15889097	2	neutral	AA	12.663	somatic	0	0.720552187285604	0.637009819789788
19	22934282	23006067	2	neutral	AA	100	somatic	0	0.439399322419957	0.457916855558296
19	24331013	24357676	4	gain	AABB	0.852736	germline	1	4.25013205012952e-10	1.02430286474942e-11
19	24357676	24390492	4	gain	AABB	1.05942	germline	1	4.27677716649605e-12	2.54241072639161e-14
19	27337779	27339830	4	gain	AAAB	100	germline	1	0.0832810183141978	0.270065653561451
19	27348034	27378799	5	gain	AAABB	0.202275	germline	1	4.24566543489744e-10	1.0231704372643e-11
19	27378799	27382901	3	gain	AAB	2.81782	germline	1	0.0143179532258403	0.0366586223084271
19	27382901	27389054	6	gain	AAAABB	1.29188	germline	1	0.0027008670061582	0.00495873435360561
19	27389054	27393156	4	gain	AABB	2.08999	germline	1	0.0143119541165714	0.0366429339306267
19	27393156	27399309	6	gain	AAAABB	9.38463	germline	1	0.00270088138424659	0.00495873435360561
19	28529410	28857570	2	neutral	AA	37.9154	somatic	0	0.0192339755855053	0.00282514252839849
19	29511839	29515941	1	loss	A	-1	somatic	0	0.0204760833613669	0.0557052159359614
19	31353637	31466442	2	neutral	AA	35.9682	somatic	0	0.847032416161502	0.668297553130946
19	33421045	33431300	2	neutral	AA	38.8792	somatic	0	0.314211765270229	0.779201007361384
19	34391168	34393219	6	gain	AAAABB	1.77255	germline	1	0.0832770175921222	0.27005870544927
19	35361291	35369495	1	loss	A	-1	germline	1	0.00113953195771078	0.00147637703700487
19	35486402	35529473	2	neutral	AA	54.5678	somatic	0	0.116415395519156	0.262012980953942
19	43475047	43647331	2	neutral	AA	13.6292	somatic	0	0.000232880754221938	0.00226567354017093
19	44065735	44078041	2	neutral	AA	54.5678	somatic	0	0.407591236418753	0.542601814914437
19	44666678	44668729	1	loss	A	-1	germline	1	0.0836356992784498	0.270681078322878
19	44742565	44783585	2	neutral	AA	27.2848	somatic	0	0.0146665742806977	0.0301933038401702
19	45487078	45546557	2	neutral	AA	42.1459	somatic	0	0.0753165388443273	0.116165200892128
19	46691015	46703321	2	neutral	AA	100	somatic	0	0.679127479766042	0.853298059771338
19	47031481	47205816	2	neutral	AA	18.4843	somatic	0	0.0156546300841778	0.0193540687371926
19	47962635	47972890	2	neutral	AA	49.0528	somatic	0	0.132619421805594	0.397661167340108
19	48934809	48938911	2	neutral	AA	54.5678	somatic	0	0.0746235278311504	0.130003306554278
19	53016299	53049115	3	gain	AAB	1.87911	germline	1	1.99340712436235e-11	1.90181204118289e-13
19	53803883	53810036	2	neutral	AA	36.3786	somatic	0	0.134847278074492	0.302524879858182
19	55418020	55448785	2	neutral	AA	100	somatic	0	0.000829883827303217	0.00771862088876141
19	57362368	57368521	2	neutral	AA	100	somatic	0	0.845350437443652	0.997647930354735
20	63581	65632	7	gain	-	-1	germline	1	0.0832765175128096	0.270057836944422
20	65632	67683	3	gain	-	-1	germline	1	0.0832975229385048	0.270094315903481
20	1406986	1411088	1	loss	A	-1	somatic	0	0.0210762492104453	0.0558242837699483
20	2235590	2237641	3	gain	AAA	100	somatic	0	0.0832950220675542	0.270089972981665
20	3745126	3755381	2	neutral	AA	100	somatic	0	0.925065701781416	0.971478206067105
20	3816911	3845625	2	neutral	AA	100	somatic	0	0.0372976892605954	0.167495558269223
20	4965471	5039307	2	neutral	AA	39.8041	somatic	0	0.000137471457475481	8.44971924794935e-05
20	9036706	9063369	2	neutral	AA	22.5258	somatic	0	0.0980329342211315	0.0143501022257049
20	20282339	20286441	2	neutral	AA	100	somatic	0	0.0882282050738377	0.169249268179302
20	23081954	23122974	2	neutral	AA	27.2864	somatic	0	0.0389017767236035	0.099092296978891
20	23444981	23481899	2	neutral	AA	36.3801	somatic	0	0.13717909339164	0.160788373558247
20	23568041	23572143	2	neutral	AA	100	somatic	0	0.464059886457933	0.377797858529228
20	25856957	25867212	2	neutral	AA	13.7933	somatic	0	0.484372363304323	0.371754905438013
20	26207678	26316381	2	neutral	AA	2.66779	somatic	0	0.0809678376161993	0.0474871295963842
20	26316381	26322534	0	loss	-	-1	germline	1	0.014310533599705	0.0366381810366412
20	28773479	28787836	7	gain	-	-1	germline	1	0.00053228191165487	0.000671151581506657
20	28804244	28822703	8	gain	-	-1	germline	1	9.64284763331821e-07	2.25228065642291e-07
20	28869876	28871927	6	gain	-	-1	germline	1	0.0832770175921222	0.27005870544927
20	29263668	29267770	4	gain	-	-1	germline	1	0.0143112438425909	0.0366407950615807
20	29267770	29376473	3	gain	-	-1	germline	1	5.1203194913122e-14	1.12465592394528e-13
20	29409289	29411340	5	gain	-	-1	germline	1	0.0832770175921222	0.27005870544927
20	29876917	29878968	9	gain	-	-1	germline	1	0.0832760174359295	0.270056968441613
20	29891274	29893325	7	gain	-	-1	germline	1	0.0832765175128096	0.270057836944422
20	30812173	30838836	7	gain	-	-1	germline	1	0.000532276354282173	0.000671151581506657
20	30939335	30941386	6	gain	-	-1	germline	1	0.0832770175921222	0.27005870544927
20	30941386	30943437	4	gain	-	-1	germline	1	0.0832810183141978	0.270065653561451
20	31164945	31166996	5	gain	-	-1	germline	1	0.0832770175921222	0.27005870544927
20	31183404	31187506	22	gain	-	-1	germline	1	0.0143083241540102	0.0366355671748747
20	31187506	31189557	5	gain	-	-1	germline	1	0.0832780177580453	0.270060442465082
20	31189557	31240832	2	neutral	AA	4.91222	somatic	0	7.81340055873097e-06	5.9872162426533e-05
20	31240832	31242883	63	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBB	100	germline	1	0.083267016468054	0.270041335739692
20	31242883	31246985	3	gain	AAA	2.42911	germline	1	0.0698948084164638	0.223358708988184
20	33779970	33784072	2	neutral	AA	100	somatic	0	0.504857520016561	0.564647811471944
20	33956356	34050702	2	neutral	AA	25.9159	somatic	0	0.527937917850016	0.365045287727907
20	36427811	36509851	2	neutral	AA	23.1183	somatic	0	0.301105765595063	0.478568987422388
20	36509851	36530361	2	neutral	AA	54.5704	somatic	0	0.0138806497963546	0.0281403602272302
20	38800818	38837736	2	neutral	AA	36.3786	somatic	0	0.147598389726988	0.180258175888315
20	43128428	43140734	2	neutral	AA	100	germline	1	0.170556279059818	0.388098006559025
20	46617179	46637689	2	neutral	AA	100	germline	1	0.171911184185885	0.077071704910602
20	51238082	51299612	2	neutral	AA	53.9091	somatic	0	0.0263396985350944	0.212476024536227
20	52530212	52560977	2	neutral	AA	54.5678	somatic	0	0.499503887702563	0.681085849282579
20	58275063	58291471	2	neutral	AA	100	somatic	0	0.774224172689825	0.876165718085099
20	59382603	59403113	2	neutral	AA	44.2433	somatic	0	0.712310438643653	0.240550822055218
20	60377338	60383491	1	loss	A	-1	germline	1	0.00624095247919685	0.0091352965125906
20	61074678	61125953	2	neutral	AA	26.8873	somatic	0	0.164296038616997	0.182110558917787
20	63663040	63675346	2	neutral	AA	100	somatic	0	0.598114214218026	0.581687724497264
21	0	7916860	6	gain	AAAABB	-1	somatic	0	NA	NA
21	7916860	7918911	7	gain	-	-1	germline	1	0.0832765175128096	0.270057836944422
21	7918911	7925064	5	gain	-	-1	germline	1	0.00270093889729956	0.00495883084197157
21	7925064	8989533	6	gain	AAAABB	-1	somatic	0	0.00270083825019125	0.004958686110068
21	8989533	8995686	9	gain	AAAAAAABB	8.6775	somatic	0	0.00270079511676537	0.00495863786696071
21	8995686	9736097	6	gain	AAAABB	-1	somatic	0	NA	NA
21	9736097	9764811	5	gain	AAAAB	14.234	somatic	0	0.000532315257026475	0.000671203820687194
21	9764811	10519579	6	gain	AAAABB	-1	somatic	0	0.0143080085434766	0.0366355671748747
21	10519579	10521630	3	gain	AAB	10.4169	germline	1	0.0833325415187018	0.270155122161026
21	10521630	10650843	6	gain	AAAABB	-1	somatic	0	NA	NA
21	10650843	10654945	5	gain	AAAAA	11.4312	germline	1	0.0143099022987985	0.0366372305225764
21	10654945	10663149	6	gain	AAAAAA	1.71366	germline	1	0.000532279132961763	0.000671151581506657
21	10663149	10691863	5	gain	AAAAA	1.88206	germline	1	4.24589817836366e-10	1.02325925510627e-11
21	10691863	10693914	61	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBB	100	germline	1	0.083267016468054	0.270041335739692
21	10693914	10704169	5	gain	AAAAA	9.93326	germline	1	0.000107584918922238	9.08418308781522e-05
21	10704169	10765699	6	gain	AAAABB	0.553133	germline	1	4.36987393337668e-14	1.11022302462516e-16
21	12966422	12968473	3	gain	AAB	84.6001	germline	1	0.0833035252769469	0.270104739123807
21	16231614	16270583	2	neutral	AA	100	germline	1	0.835308759327022	0.882027203993974
21	16319807	16354674	2	neutral	AA	100	somatic	0	0.131300245453432	0.403112564958329
21	16725905	16773078	2	neutral	AA	100	somatic	0	0.808064811955188	0.99457838453147
21	19615764	19646529	2	neutral	AA	75.8428	somatic	0	0.668365123002895	0.473498031932426
21	20025964	20036219	2	neutral	AA	100	somatic	0	0.0682478005662266	0.0557590476295015
21	21047362	21080178	1	loss	A	-1	germline	1	3.54270011659024e-11	8.16791079216728e-13
21	22417430	22452297	2	neutral	AA	66.5491	somatic	0	0.0478765609565399	0.0222347709717888
21	29460564	29501584	2	neutral	AA	100	somatic	0	0.632868824742022	0.435598038213302
21	30346596	30350698	2	neutral	AA	54.5678	somatic	0	0.154380038114515	0.172285410504713
21	31784347	31786398	4	gain	AAAB	48.6512	germline	1	0.0832890202254255	0.270079550177271
21	31839724	31843826	2	neutral	AA	54.5678	somatic	0	0.190834111086617	0.339489373820944
21	41040510	41114346	2	neutral	AA	100	somatic	0	0.726753434755599	0.601110193393628
21	41620943	41627096	2	neutral	AA	100	germline	1	0.614643202258838	0.479941305010639
21	41805533	41807584	4	gain	AAAA	11.1206	germline	1	0.0832950220675542	0.270089972981665
21	43335579	43337630	4	gain	AAAA	2.67504	germline	1	0.083286019435733	0.270074338885173
21	44732310	44812299	2	neutral	AA	14.432	somatic	0	9.11920024122536e-05	0.00194248818822074
22	11212817	11214868	6	gain	-	-1	somatic	0	0.0832770175921222	0.27005870544927
22	11620966	11629170	4	gain	AABB	17.2971	germline	1	0.0143125065733878	0.0366422209621406
22	12691588	12693639	11	gain	AAAAAAAABBB	45.3282	germline	1	0.0832740171527352	0.270053494450766
22	15934219	16567978	2	neutral	AA	11.9271	germline	1	0.319179422430466	0.591273477895691
22	18731783	18733834	5	gain	AAABB	8.78039	germline	1	0.0832770175921222	0.27005870544927
22	20596142	20600244	1	loss	A	-1	somatic	0	0.0269689298116183	0.0569211001330943
22	33359515	33363617	1	loss	A	-1	somatic	0	0.0172211548485337	0.0435083759904368
22	33384127	33388229	1	loss	A	-1	somatic	0	0.0218655653922458	0.056326554869504
22	34577809	34579860	1	loss	A	-1	somatic	0	0.0843007396319379	0.271832083248778
22	38628534	38763900	2	neutral	AA	58.2233	somatic	0	0.290937965254864	0.574805545983548
22	39040785	39053091	2	neutral	AA	54.5678	somatic	0	0.743804125685517	0.993263297440257
22	49826994	49829045	1	loss	A	-1	somatic	0	0.0971815997840642	0.293424634607853
X	5135704	5139806	0	loss	-	-1	somatic	0	0.0143153480770283	0.0366586223084245
X	78268211	78270262	5	gain	AAABB	92.3397	germline	1	0.0832780177580453	0.270060442465082
X	79664942	79671095	0	loss	-	-1	germline	1	0.0143371889974456	0.0367240538224308
X	108772734	108776836	0	loss	-	-1	germline	1	0.0143096655672922	0.0366384186685292
X	129364774	129368876	0	loss	-	-1	somatic	0	0.0144239727416481	0.0369856046618879
X	132804301	132808403	0	loss	-	-1	germline	1	0.0143118751957047	0.0366438845741529
X	145340013	145344115	0	loss	-	-1	germline	1	0.0143125065733878	0.0366486381154797
X	150135251	150137302	2	gain	-	-1	germline	1	0.480748847054264	0.705419074645005
X	155560146	155562197	0	loss	-	-1	germline	1	0.083267016468054	0.270041335739683
Y	10121685	10123736	2	gain	AA	13.9621	somatic	0	0.0866350397454172	0.275842352530853
Y	10624180	10753393	2	gain	AB	52.592	somatic	0	0.00735803952082841	0.013655618328324
Y	10753393	10755444	4	gain	-	-1	germline	1	0.0832800181190831	0.270063916521173
Y	10755444	10759546	2	gain	-	-1	germline	1	0.893748358970337	0.72504544099508
Y	10759546	10761597	8	gain	-	-1	germline	1	0.0832760174359295	0.270056968441613
Y	10761597	10763648	4	gain	-	-1	germline	1	0.0832800181190831	0.270063916521173
Y	10763648	10767750	2	gain	-	-1	germline	1	0.878196674655243	0.789336075995183
Y	10767750	10769801	4	gain	-	-1	germline	1	0.0832885200877282	0.270078681623491
Y	10769801	10775954	2	gain	-	-1	germline	1	0.299358015753168	0.203804518442812
Y	10775954	10778005	6	gain	-	-1	germline	1	0.0832770175921222	0.27005870544927
Y	10780056	10782107	3	gain	-	-1	germline	1	0.0833325415187018	0.270155122161026
Y	10784158	10786209	4	gain	-	-1	germline	1	0.0832880199524636	0.27007781307175
Y	10786209	10788260	2	gain	-	-1	germline	1	0.168738647669804	0.396483551523657
Y	10788260	10790311	4	gain	-	-1	germline	1	0.0832835188445566	0.270069996197826
Y	10790311	10794413	2	gain	-	-1	germline	1	0.877470848652447	0.70523239725823
Y	10794413	10798515	5	gain	-	-1	germline	1	0.0143104546857482	0.0366386563017682
Y	10798515	10800566	3	gain	-	-1	germline	1	0.0834536976389665	0.270365415056574
Y	10800566	10802617	4	gain	-	-1	germline	1	0.0832805182154241	0.270064785040292
Y	10806719	10808770	3	gain	-	-1	germline	1	0.0832980231199937	0.270095184493962
Y	10821076	10827229	3	gain	-	-1	germline	1	0.00741988288883157	0.0293420580705354
Y	10843637	10845688	4	gain	-	-1	germline	1	0.0832880199524636	0.27007781307175
Y	10845688	10894912	2	gain	-	-1	germline	1	0.00148412733492188	0.000131357880962413
Y	10923626	10927728	4	gain	-	-1	germline	1	0.0143150323298292	0.0366474496795737
Y	10927728	10933881	2	gain	-	-1	germline	1	0.00955892000150672	0.0131264794406551
Y	10933881	10935932	4	gain	-	-1	germline	1	0.0832835188445566	0.270069996197826
Y	10935932	10985156	2	gain	-	-1	germline	1	0.955663591987745	0.0473230079274405
Y	10985156	10987207	4	gain	-	-1	germline	1	0.0832835188445566	0.270069996197826
Y	10987207	10989258	13	gain	-	-1	germline	1	0.0832740171527352	0.270053494450766
Y	10989258	10999513	2	gain	-	-1	germline	1	0.944573318841295	0.40878656410116
Y	10999513	11001564	9	gain	-	-1	germline	1	0.0832760174359295	0.270056968441613
Y	11003615	11005666	3	gain	-	-1	germline	1	0.0833670715032155	0.270215069535531
Y	11013870	11015921	17	gain	-	-1	germline	1	0.0832725169658813	0.270050888979038
Y	11015921	11040533	2	gain	AA	4.93318	germline	1	0.000756889055043337	0.000512426466834248
Y	11290755	11307163	24	gain	AAAAAAAAAAAAAAAABBBBBBBB	3.74223	germline	1	9.63914522249999e-07	2.25198850900554e-07
Y	11307163	11309214	4	gain	AABB	2.64158	germline	1	0.0832855193126323	0.270073470343626
Y	11313316	11315367	15	gain	AAAAAAAAAABBBBB	6.86864	germline	1	0.0832740171527352	0.270053494450766
Y	11315367	11317418	4	gain	AAAB	3.56075	germline	1	0.0832840189579264	0.270070864731218
Y	11319469	11333826	10	gain	AAAAAAABBB	6.83861	germline	1	0.00053224578969877	0.000671142875347086
Y	11674292	11680445	2	gain	AA	15.5908	germline	1	0.18332370147422	0.506985774713714
Y	11686598	11688649	4	gain	AAAB	49.5444	germline	1	0.0832895203655557	0.27008041873309
Y	11688649	11690700	8	gain	AAAAABBB	35.8545	germline	1	0.0832765175128096	0.270057836944422
Y	11717363	11719414	5	gain	AAAAB	9.5464	germline	1	0.0832775176738675	0.270059573956157
Y	11721465	11723516	46	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBB	100	germline	1	0.0832690166150273	0.270044809616365
Y	11729669	11731720	3	gain	AAB	26.3903	germline	1	0.0832985233039155	0.27009605308648
Y	11731720	11746077	2	gain	AB	100	germline	1	0.809812175252786	0.325962367526196
Y	11746077	11748128	12	gain	AAAAAAAABBBB	8.03853	germline	1	0.0832740171527352	0.270053494450766
Y	26636337	26640439	4	gain	AABB	12.0498	germline	1	0.0143144797870131	0.036645548252254
Y	26640439	26656847	2	gain	AB	6.26477	germline	1	0.918249329871557	0.516151255477233
Y	56825006	56837312	22	gain	AAAAAAAAAAAAAABBBBBBBB	30.578	germline	1	2.21011117812497e-05	1.22934470820901e-05
Y	56837312	56851669	5	gain	AAABB	4.61669	germline	1	0.000107579372601982	9.08418308781522e-05
