chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	4512255	4530295	2	neutral	AA	35.8133	somatic	0	0.026208658306298	0.135882918622198
1	5666815	5678090	3	gain	AAB	0.628252	somatic	0	0.000108107477689418	9.16660046077489e-05
1	16612585	16617095	6	gain	AAAABB	100	germline	1	0.0143079685906372	0.0366342001620831
1	16632880	16944070	4	gain	AABB	1.05505	germline	1	4.2729091320742e-12	2.54241072639161e-14
1	17065840	17167315	2	neutral	AA	6.17987	germline	1	0.154897549116478	0.384923420271312
1	31430190	31432445	6	gain	AAAAAA	6.26386	germline	1	0.083272244250961	0.270050370268994
1	31432445	31475290	2	neutral	AA	100	germline	1	0.829005575160091	0.676290812628702
1	55662420	55669185	1	loss	A	-1	somatic	0	0.00271935217705079	0.00501991799048618
1	72288535	72347165	1	loss	A	-1	germline	1	1.21495705990411e-18	0
1	83561280	83655990	2	neutral	AA	57.8308	somatic	0	0.131712740428981	0.53804756043964
1	90684825	91032095	2	neutral	AA	57.7863	somatic	0	0.610642162943031	0.880740619099059
1	102293565	102338665	2	neutral	AA	100	somatic	0	0.0630175589309817	0.124812066070918
1	105933135	105960195	3	gain	AAB	12.648	somatic	0	1.0089565466352e-06	2.792764293158e-07
1	125080340	125082595	8	gain	-	-1	germline	1	0.0832705882142595	0.270047494096171
1	125082595	125163775	3	gain	-	-1	germline	1	0.000171377015872942	0.00386654459452318
1	125163775	125166030	6	gain	-	-1	germline	1	0.0832727962691235	0.270051328998237
1	153971400	153996205	2	neutral	AA	27.2839	somatic	0	0.0294242397407561	0.194550783039876
1	179917430	180151950	2	neutral	AA	58.2181	somatic	0	0.000881667159137605	0.000529413387653999
1	196771300	196827675	1	loss	A	-1	somatic	0	4.64191137265044e-06	1.70795503373622e-06
1	221643950	221664245	2	neutral	AA	100	somatic	0	0.120340975522853	0.143686811762514
1	224011700	224013955	7	gain	AAAAAAA	1.33273	germline	1	0.083271140223529	0.270048452817961
1	234777070	234781580	6	gain	AAAABB	39.796	germline	1	0.0143082298930135	0.036634987062825
1	236096245	236098500	5	gain	AAABB	8.71604	somatic	0	0.0832727962691235	0.270051328998237
1	247788420	247844795	2	neutral	AA	86.5228	germline	1	0.341796359812969	0.809731069468822
2	3179550	3181805	8	gain	-	-1	germline	1	0.0832705882142595	0.270047494096171
2	35750770	35766555	1	loss	A	-1	somatic	0	4.64521577334856e-06	1.69262768623391e-06
2	89773805	89782825	5	gain	-	-1	germline	1	0.000532203284672454	0.000671098217207233
2	89782825	89796355	3	gain	-	-1	germline	1	0.00011427767001539	0.000109520180919032
2	89796355	89825670	4	gain	-	-1	germline	1	1.97590146740138e-09	7.56098517129544e-11
2	89825670	89841455	31	gain	-	-1	germline	1	4.59356742782625e-06	1.66357847730669e-06
2	89841455	89850475	4	gain	-	-1	germline	1	0.000532338248755213	0.000671271220453185
2	91410935	91415445	4	gain	-	-1	germline	1	0.0143097977956744	0.0366383971369344
2	238964605	238993920	2	neutral	AA	100	somatic	0	0.579572225770486	0.555211278787698
2	239169810	239185595	2	neutral	AA	13.7221	germline	1	0.851862867807616	0.840423042794363
2	239593750	239596005	2	neutral	AA	16.4587	germline	1	0.0982666660518216	0.295190310974617
2	240146225	240148480	2	neutral	AA	100	somatic	0	0.0897722054918856	0.281161369991944
2	241555600	241562365	2	neutral	AA	27.3456	somatic	0	0.926278925765574	0.999000946085551
3	11572660	11662860	2	neutral	AA	13.8412	somatic	0	0.955469681191608	0.998108278983932
3	12240140	12251415	2	neutral	AA	100	somatic	0	0.444110345484713	0.369881145454402
3	16896715	16910245	2	neutral	AA	100	somatic	0	0.208420250619977	0.0929959901415486
3	20685115	20703155	2	neutral	AA	72.5226	somatic	0	0.848931888397642	0.987128399952896
3	45501390	45510410	1	loss	A	-1	somatic	0	0.000535343293586913	0.000675203859967222
3	67323025	67406460	2	neutral	AA	100	somatic	0	0.0146593175408557	0.00232842316426896
3	72739535	72836500	2	neutral	AA	19.6428	somatic	0	0.234130154704906	0.173885966752424
3	75725155	75844670	2	neutral	AA	0.32049	germline	1	0.00480323553221029	0.0358417119714163
3	76198705	76390380	2	neutral	AA	100	somatic	0	0.318558148031748	0.638649355032868
3	81764045	81811400	1	loss	A	-1	germline	1	4.59243195193692e-14	1.11022302462516e-16
3	88019415	88044220	2	neutral	AA	100	germline	1	0.0379132608326282	0.0432841197274124
3	90272160	93796725	2	neutral	AA	0.987063	somatic	0	0.00181404628605843	0.000184309765322466
3	99179410	99183920	0	loss	-	-1	somatic	0	0.0143094493597638	0.036637085537108
3	103071540	103100855	2	neutral	AA	100	germline	1	0.0168331407548599	0.0617513532875631
3	121057420	121075460	1	loss	A	-1	germline	1	9.82789451918341e-07	2.29547862828916e-07
3	128683830	128695105	3	gain	AAB	5.15119	somatic	0	0.000108411114956778	9.25573728620677e-05
3	156686420	156690930	2	neutral	AA	100	germline	1	0.160706592375694	0.29489978450889
3	172615740	172629270	2	neutral	AA	100	somatic	0	0.229277407196307	0.689091400586308
3	193156535	193167810	1	loss	A	-1	somatic	0	0.000111122203297709	9.78747620820064e-05
3	193418115	193424880	1	loss	A	-1	somatic	0	0.00271191886921696	0.00497283375283131
3	197754480	197774775	2	neutral	AA	36.3786	somatic	0	0.0163108639386541	0.0590524038306132
4	554730	556985	4	gain	-	-1	somatic	0	0.0832805248346558	0.270064751468518
4	7863185	7865440	4	gain	-	-1	somatic	0	0.0832761084403491	0.270057081425871
4	40294595	40296850	5	gain	-	-1	germline	1	0.0832739003143413	0.270053246464177
4	46200440	46204950	1	loss	A	-1	somatic	0	0.0146617350110493	0.0377036194496262
4	49145470	49149980	73	gain	-	-1	somatic	0	0.0143060525018319	0.0366313149858846
4	61072165	61076675	1	loss	A	-1	germline	1	0.0143253107725928	0.0366887936583592
4	62804005	62810770	1	loss	A	-1	somatic	0	0.00271363995542355	0.00498250693211955
4	70619835	70624345	1	loss	A	-1	somatic	0	0.0143899620662941	0.0368777935076059
4	91009545	91016310	1	loss	A	-1	germline	1	0.00271166397832487	0.00499568155543761
4	97431785	97438550	1	loss	A	-1	germline	1	0.0143537606470527	0.0367692384710534
4	134510750	134515260	1	loss	A	-1	somatic	0	0.0143177267348371	0.0366572887302323
4	146004485	146006740	0	loss	-	-1	somatic	0	0.0832667242323717	0.270040783113226
5	12810655	12821930	1	loss	A	-1	somatic	0	0.00011140692590883	9.96456727956341e-05
5	26796165	26802930	1	loss	A	-1	germline	1	0.0143352538409573	0.0367176939835756
5	45370600	45377365	1	loss	A	-1	somatic	0	0.00271702128651012	0.00498443293448159
5	46405645	46410155	0	loss	-	-1	somatic	0	0.0143097977956744	0.0366407581201609
5	49657355	49659610	232	gain	-	-1	germline	1	0.0832650682845973	0.270037907014926
5	91203475	91207985	1	loss	A	-1	somatic	0	0.015295666778048	0.0396227340567136
5	118538585	118545350	1	loss	A	-1	somatic	0	0.0143598760112392	0.036777659905925
5	125614775	125617030	0	loss	-	-1	somatic	0	0.0832672762208915	0.270041741817623
5	137516665	137521175	1	loss	A	-1	somatic	0	0.0147398787853743	0.0379371873027422
5	140723275	140739060	2	neutral	AA	27.2839	somatic	0	0.343489963462902	0.572612775132415
5	143005335	143100045	2	neutral	AA	100	somatic	0	0.888470197919433	0.820607721352631
5	143314270	143339075	2	neutral	AA	100	somatic	0	0.252443451619531	0.335833505966064
5	146532155	146536665	2	neutral	AA	100	somatic	0	0.509973718085149	0.586260065157834
5	149073540	149143445	2	neutral	AA	36.3786	somatic	0	0.0198288823599576	0.0859888116050858
5	149815435	149831220	2	neutral	AA	54.5679	somatic	0	0.425114725167601	0.740654577222963
5	150945190	150956465	2	neutral	AA	100	germline	1	0.158622900088335	0.306495336398516
5	151224810	151258635	2	neutral	AA	54.5678	somatic	0	0.584717443359504	0.524300201893531
5	154187880	154255530	2	neutral	AA	100	germline	1	0.409563388148524	0.597868064232528
5	154424655	154429165	1	loss	A	-1	somatic	0	0.0143885614830808	0.0368321768345494
5	158864750	158921125	2	neutral	AA	58.3114	somatic	0	0.000279664426818323	0.000546465915511773
5	160652965	160655220	1	loss	A	-1	somatic	0	0.08348996901474	0.270428301959985
5	164687160	164786380	2	neutral	AA	36.3786	germline	1	0.649657968249657	0.35880310087657
5	165093060	165097570	2	neutral	AA	100	somatic	0	0.203906421201344	0.249452320135279
5	166261150	166263405	2	neutral	AA	100	somatic	0	0.226259371756745	0.466386085806944
5	167715625	167792295	2	neutral	AA	27.6933	germline	1	0.00886105029102632	0.00395133984502261
5	169945820	170029255	2	neutral	AA	54.5678	germline	1	0.315197043748917	0.438626957398528
5	171373235	171384510	2	neutral	AA	54.5678	somatic	0	0.00928253292915957	0.00889192363522107
5	171695700	171727270	2	neutral	AA	100	somatic	0	0.0556757154306116	0.188246474818955
5	176803275	176810040	2	neutral	AA	36.4741	germline	1	0.968945119899712	0.820371676789508
5	176913770	176938575	2	neutral	AA	54.5678	somatic	0	0.272334674385624	0.501767304296858
5	178156275	178183335	2	neutral	AA	100	somatic	0	0.1056607033547	0.165565333842738
5	178584725	178586980	5	gain	AAAAA	3.07962	germline	1	0.0832727962691235	0.270051328998237
6	257070	381095	3	gain	AAB	0.466045	germline	1	8.72452892788723e-36	0
6	381095	399135	2	neutral	AA	28.1259	somatic	0	0.425768751153179	0.723552315437273
6	1776940	1975380	2	neutral	AA	13.626	somatic	0	0.104596933846696	0.0850247564465945
6	14928100	14975455	2	neutral	AA	100	somatic	0	1.81521037362406e-06	3.92797869598338e-05
6	21837420	21965955	2	neutral	AA	60.3633	somatic	0	5.98119121612381e-05	0.00315592285376898
6	21965955	22033605	2	neutral	AA	36.3786	somatic	0	0.301243640658734	0.46341461647255
6	32487785	32665930	1	loss	A	-1	somatic	0	1.01141424372819e-20	0
6	35658315	35662825	0	loss	-	-1	germline	1	0.0143117143269686	0.0366465299728855
6	35786850	35798125	3	gain	AAB	2.88105	germline	1	0.000108220708782251	9.19156173314617e-05
6	40966585	41230420	2	neutral	AA	28.3218	somatic	0	0.0798215963544199	0.109560313917888
6	41733285	41737795	2	neutral	AA	100	somatic	0	0.983843497793759	0.962281194450316
6	51199775	51204285	1	loss	A	-1	somatic	0	0.0144965826221574	0.0371817522874349
6	53141330	53231530	2	neutral	AA	37.2694	somatic	0	3.90450391386499e-11	2.36820522081516e-08
6	54063625	54070390	0	loss	-	-1	somatic	0	0.0143066621418976	0.0366326264049682
6	60235560	60240070	4	gain	-	-1	somatic	0	0.0143119756896877	0.0366439063048534
6	64950765	64973315	2	neutral	AA	100	somatic	0	0.397875786282703	0.312834220583224
6	66962225	67798830	2	neutral	AA	100	somatic	0	0.00011515658554868	0.000177256400579751
6	73046215	73109355	2	neutral	AA	50.7105	somatic	0	0.503718389509528	0.81273568348675
6	73882820	73891840	1	loss	A	-1	germline	1	0.0005354512388587	0.000674759396286473
6	103290275	103315080	1	loss	A	-1	germline	1	4.40522916693476e-08	4.32182389875635e-09
6	104422285	104487680	2	neutral	AA	14.3327	somatic	0	0.0221496244596485	0.0281386574348497
6	106532965	106614145	2	neutral	AA	15.6128	somatic	0	0.367487467723295	0.307803835203319
6	116854100	117090875	2	neutral	AA	23.5585	somatic	0	5.08420011439182e-05	0.000101197443921341
6	133304325	133333640	2	neutral	AA	100	somatic	0	0.0172313171348298	0.0111976738313214
6	139900200	139925005	2	neutral	AA	100	somatic	0	0.78844716199509	0.910675516616379
6	157308800	157311055	9	gain	AAAAAABBB	4.29301	somatic	0	0.0832705882142595	0.270047494096171
6	157313310	157315565	5	gain	AAABB	10.5563	somatic	0	0.0832733482902502	0.270052287729964
6	162055575	162080380	2	neutral	AA	100	somatic	0	0.725231871036135	0.536988637198472
6	169339225	169440700	2	neutral	AA	9.81814	somatic	0	0.0280903434409389	0.214377149445909
7	9761895	9766405	1	loss	A	-1	somatic	0	0.0143165937920236	0.0366596507785322
7	20231860	20238625	1	loss	A	-1	somatic	0	0.00271941606277107	0.0049896258378288
7	51529005	51531260	0	loss	-	-1	germline	1	0.0832672762208915	0.270041741817623
7	54395110	54397365	0	loss	-	-1	somatic	0	0.0832678282123756	0.270042700524506
7	61096970	61108245	2	neutral	AA	4.8682	somatic	0	0.537424301315589	0.640340857937926
7	62294375	62334965	3	gain	-	-1	germline	1	2.98158546545073e-07	1.48626509099969e-07
7	62334965	62452225	3	gain	AAB	0.518216	germline	1	6.96034035276555e-13	1.55875312657372e-13
7	62774690	62788220	1	loss	A	-1	germline	1	2.2330526539682e-05	1.24413701545478e-05
7	65796390	65823450	3	gain	AAB	0.166308	germline	1	2.1114288089385e-09	1.15340847983703e-10
7	67433520	67438030	2	neutral	AA	100	somatic	0	0.0305667051228722	0.0578666571767276
7	69007510	69034570	2	neutral	AA	51.3851	somatic	0	0.15301777228193	0.290376598627757
7	70854355	70901710	3	gain	AAB	1.41379	germline	1	1.63589711587706e-14	1.11022302462516e-16
7	77217965	77242770	2	neutral	AA	54.5678	somatic	0	0.267966088906445	0.475389858127253
7	87200850	87428605	2	neutral	AA	100	somatic	0	0.0185735121634599	0.0851451908104721
7	93699760	93702015	1	loss	A	-1	somatic	0	0.0833943123462509	0.270262309833292
7	97016865	97181480	2	neutral	AA	28.1132	somatic	0	0.0417639072177781	0.0851883716916868
7	100728595	100739870	1	loss	A	-1	somatic	0	0.000109894236670877	9.58715723574644e-05
7	100949585	100956350	3	gain	AAB	0.967205	germline	1	0.00270579162752143	0.00497133888778456
7	100956350	100958605	12	gain	AAAAAAAAAAAB	43.5648	germline	1	0.0832672762208915	0.270041741817609
7	100958605	100960860	7	gain	AAAABBB	2.28049	germline	1	0.083271140223529	0.270048452817961
7	100960860	100969880	4	gain	AABB	0.275945	germline	1	0.000532669659457002	0.000672069498678818
7	100969880	100976645	3	gain	AAB	1.18663	germline	1	0.00277403052815564	0.00518434171913806
7	101132240	101202145	2	neutral	AA	24.0642	somatic	0	2.04677746518195e-09	1.29201848109162e-08
7	101265285	101285580	2	neutral	AA	1.84228	somatic	0	0.000471434783409777	0.00366689374920959
7	105732440	105782050	2	neutral	AA	18.1855	somatic	0	0.170246704497624	0.541357403096625
7	108616585	108648155	2	neutral	AA	54.5678	somatic	0	0.0130929103522872	0.0493784840101569
7	109800460	109813990	1	loss	A	-1	somatic	0	2.2392183256598e-05	1.24828378244013e-05
7	113963190	114008290	2	neutral	AA	89.5799	somatic	0	0.232597515405403	0.397651320043659
7	117000675	117032245	2	neutral	AA	100	somatic	0	0.397125012177143	0.388614109446842
7	122980935	123003485	2	neutral	AA	36.3786	somatic	0	0.303095477776452	0.386310957308166
7	125585460	125596735	2	neutral	AA	100	somatic	0	0.786911686584227	0.568236213585255
7	130977165	130983930	2	neutral	AA	100	somatic	0	0.880453221171615	0.927373372137789
7	135387945	135480400	2	neutral	AA	100	somatic	0	0.0924204008544269	0.214901892333353
7	143846450	143850960	4	gain	AABB	55.383	germline	1	0.0143103204635735	0.0366394464463778
7	150548310	150588900	2	neutral	AA	26.0576	somatic	0	0.410499199155883	0.679407672399526
7	152374860	152401920	2	neutral	AA	13.2626	germline	1	0.196442666338291	0.432505169640091
7	152401920	152408685	9	gain	AAAAAAABB	2.19141	germline	1	0.00270037520850376	0.00495832963043408
7	152413195	152417705	2	neutral	AA	6.28703	germline	1	0.506149608721414	0.510020313960739
7	154600545	154607310	1	loss	A	-1	somatic	0	0.00271694149382967	0.00498571731514408
7	155317635	155346950	2	neutral	AA	24.9446	somatic	0	0.191785108771402	0.277281600030431
7	157980790	158050695	2	neutral	AA	29.5217	somatic	0	0.0469221311712195	0.0909154381693641
7	158149915	158152170	5	gain	AAABB	21.6708	germline	1	0.0832727962691235	0.270051328998237
7	158152170	158167955	2	neutral	AA	90.6568	somatic	0	0.171520334576795	0.235554736512509
8	617870	674245	3	gain	AAB	1.3195	germline	1	1.65332419250286e-11	2.33146835171283e-15
8	5154930	5166205	2	neutral	AA	100	somatic	0	0.786745832838304	0.992516333837297
8	5736720	5747995	1	loss	A	-1	somatic	0	0.000112592971254006	0.000102151764479141
8	6111050	6115560	0	loss	-	-1	germline	1	0.0143121499338395	0.0366462675986868
8	9529630	9543160	2	neutral	AA	36.3915	somatic	0	0.181457760117498	0.0931465498117329
8	11915420	11940225	2	neutral	AA	7.50647	somatic	0	0.864005407524693	0.868038887130142
8	14373370	14490630	2	neutral	AA	2.41216	somatic	0	0.305195505804249	0.275039840836766
8	15532440	15554990	2	neutral	AA	100	somatic	0	0.832717256862136	0.673880621021166
8	25113935	25134230	1	loss	A	-1	germline	1	2.11783613918973e-07	3.52323077379424e-08
8	25208645	25210900	0	loss	-	-1	germline	1	0.0832727962691235	0.270051328998251
8	26839010	27039705	2	neutral	AA	68.176	somatic	0	0.000248365339106101	0.0212325262710584
8	27154710	27163730	2	neutral	AA	100	somatic	0	0.453452017065497	0.435762476019665
8	27621495	27626005	2	neutral	AA	100	somatic	0	0.440523151312289	0.531099689941087
8	33464200	33511555	2	neutral	AA	100	somatic	0	6.03808343124464e-05	6.9602493639187e-05
8	34409045	34458655	2	neutral	AA	100	somatic	0	0.0814774372910801	0.267115488000557
8	37322505	37327015	2	neutral	AA	100	somatic	0	0.223643036591396	0.222752780157085
8	39374555	39527895	1	loss	A	-1	germline	1	5.95972076234414e-43	0
8	41931725	42017415	2	neutral	AA	88.9293	somatic	0	0.6475342865482	0.798676507695519
8	43237370	43241880	8	gain	AAAAABBB	0.918387	germline	1	0.0143078814907805	0.0366342001620831
8	43241880	43244135	2	neutral	AA	8.89939	somatic	0	0.450604399137959	0.681527334174342
8	47003220	47050575	2	neutral	AA	100	somatic	0	0.353667725849577	0.283771844743229
8	52730920	52748960	2	neutral	AA	100	somatic	0	0.789267936696975	0.861321190905476
8	53030835	53127800	2	neutral	AA	36.3786	somatic	0	0.561057156938773	0.686196002920207
8	66278960	66308275	2	neutral	AA	72.3459	somatic	0	0.53600268176633	0.642667299856828
8	67974720	67995015	2	neutral	AA	36.3785	somatic	0	0.9771178577658	0.922308961870208
8	80217115	80221625	2	neutral	AA	54.7239	somatic	0	0.0436959768224856	0.116027154794776
8	81468640	81513740	2	neutral	AA	73.6562	somatic	0	0.13370468443527	0.297736218227478
8	88883080	88941710	2	neutral	AA	54.8546	somatic	0	0.787292573293904	0.734637681823504
8	96730480	96746265	2	neutral	AA	34.1114	somatic	0	0.57559183922149	0.31712440964249
8	97034905	97070985	2	neutral	AA	100	somatic	0	0.323582297595627	0.238013129229026
8	100399365	100428680	2	neutral	AA	11.5817	somatic	0	0.48986942837714	0.404499930339572
8	106005295	106014315	2	neutral	AA	54.5678	somatic	0	0.176766270022236	0.374286482214149
8	109058565	109063075	2	neutral	AA	100	somatic	0	0.267470749442026	0.320625971355775
8	110982080	110988845	2	neutral	AA	100	somatic	0	0.0717658730659173	0.101029885208243
8	111295525	111309055	2	neutral	AA	100	germline	1	0.0155100862506562	0.0651145234023185
8	113327280	113336300	2	neutral	AA	36.3786	somatic	0	0.296146264782009	0.566444770346062
8	115629635	115634145	2	neutral	AA	100	somatic	0	0.901026813825028	0.962638329208168
8	118430345	118434855	2	neutral	AA	54.5728	germline	1	0.417149760893789	0.862709859477245
8	121415965	121438515	2	neutral	AA	100	somatic	0	0.215590786635679	0.441148410450348
8	121875985	121887260	2	neutral	AA	100	somatic	0	0.188335132028323	0.523581136013582
8	122058640	122067660	2	neutral	AA	54.5678	somatic	0	0.296892592190444	0.338084083066298
8	122322475	122338260	2	neutral	AA	54.5678	germline	1	0.497582992738211	0.847490596169008
8	124347465	124363250	2	neutral	AA	36.385	somatic	0	0.0529904419403934	0.0489961186155546
8	130699800	130738135	2	neutral	AA	54.5678	somatic	0	0.0195701432011509	0.0129676900884543
8	130805785	130817060	2	neutral	AA	100	somatic	0	0.510248405472356	0.535384797533511
8	136147880	136152390	0	loss	-	-1	somatic	0	0.0143123241798626	0.0366502033842449
8	142216085	142256675	2	neutral	AA	3.10266	somatic	0	0.321175173119855	0.436931424875478
8	143244365	143318780	2	neutral	AA	17.9027	germline	1	0.885696391670861	0.252233021513755
8	143618695	143632225	1	loss	A	-1	germline	1	0.00010819546825612	9.13548941845477e-05
8	144123815	144126070	6	gain	AAAABB	16.8286	germline	1	0.0832727962691235	0.270051328998237
8	145068660	145070915	3	gain	-	-1	germline	1	0.0836893082139858	0.2707739575277
9	6697350	6710880	1	loss	A	-1	germline	1	2.24855426020674e-05	1.30020359974115e-05
9	23359545	23375330	1	loss	A	-1	germline	1	1.00721305764197e-05	4.48134548195478e-05
9	40912465	40914720	6	gain	-	-1	somatic	0	0.0832716922357629	0.270049411542235
9	40923740	40928250	6	gain	-	-1	germline	1	0.0143082298930135	0.0366347247609345
9	42387235	42389490	6	gain	AAAABB	9.10644	germline	1	0.0832727962691235	0.270051328998237
9	69122515	69129280	1	loss	A	-1	somatic	0	0.00273795267633217	0.00504236904419675
9	90366870	90375890	1	loss	A	-1	germline	1	0.000536275374793175	0.000677604831219036
9	98929105	98962930	2	neutral	AA	36.1368	somatic	0	0.0506259627202991	0.0859436426494533
9	101953060	101962080	1	loss	A	-1	germline	1	0.000536813088062861	0.000676093610817996
9	103012910	103015165	0	loss	-	-1	germline	1	0.0832689322042364	0.270044617945724
9	108215195	108269315	2	neutral	AA	12.6447	germline	1	0.38057994940817	0.507447944362126
9	111611225	111631520	2	neutral	AA	27.9312	somatic	0	0.00509492866467707	0.0330352120404039
9	112152425	112312530	2	neutral	AA	46.7577	somatic	0	0.00062857318649506	0.00202865430252208
9	115907000	115922785	2	neutral	AA	54.5678	somatic	0	0.90660857294112	0.800707116877614
9	117079600	117095385	2	neutral	AA	21.9434	germline	1	0.828027718350554	0.739926292814106
9	128650005	128652260	0	loss	-	-1	somatic	0	0.0832744523413967	0.270054205200887
9	129423470	129443765	3	gain	AAB	0.219423	germline	1	2.1118568168168e-07	3.53500813066177e-08
9	130663720	130853140	2	neutral	AA	11.0215	somatic	0	2.94218362719124e-12	1.87690785136141e-09
9	137327245	137329500	6	gain	AAAABB	6.60726	germline	1	0.0832727962691235	0.270051328998237
9	137354305	137356560	4	gain	AABB	33.521	germline	1	0.0832761084403491	0.270057081425871
9	137356560	137383620	2	neutral	AA	7.6407	somatic	0	0.0102316544942171	0.00364343202712036
10	26935975	26940485	3	gain	-	-1	somatic	0	0.0143157223513641	0.0366502033842411
10	38526675	38528930	18	gain	-	-1	germline	1	0.0832661722468161	0.270039824411298
10	38578540	38580795	5	gain	-	-1	germline	1	0.0832727962691235	0.270051328998237
10	41837015	41843780	2	neutral	AA	16.8052	germline	1	0.237618535853473	0.467867826804188
10	41857310	41911430	23	gain	AAAAAAAAAAAAAAABBBBBBBB	9.10211	germline	1	2.03497286766745e-07	3.04683027696484e-08
10	42299290	42321840	3	gain	AAB	2.54959	somatic	0	6.96863821515942e-07	1.2561097852859e-05
10	46513885	46561240	4	gain	AABB	0.492372	germline	1	4.37073908611745e-14	1.11022302462516e-16
10	56753840	56767370	1	loss	A	-1	somatic	0	2.23533294917792e-05	1.24796226999013e-05
10	68628670	68633180	2	neutral	AA	100	somatic	0	0.0996492621821204	0.137474771503455
10	75930360	77231495	2	neutral	AA	100	somatic	0	3.04796128027152e-15	4.98910912583028e-11
10	128462840	128465095	14	gain	AAAAAAABBBBBBB	100	germline	1	0.0832672762208915	0.270041741817609
10	129716620	129732405	2	neutral	AA	36.3786	somatic	0	0.144700540196003	0.282450614800234
11	50176005	50178260	0	loss	-	-1	somatic	0	0.0832661722468161	0.270039824411312
11	54755910	54778460	1	loss	A	-1	somatic	0	2.06492135353321e-07	3.1116951793031e-08
11	54922780	54934055	1	loss	A	-1	somatic	0	0.000108700717377428	9.20028050676036e-05
11	55188870	55204655	1	loss	A	-1	somatic	0	0.000108322958925988	9.18876680832126e-05
11	55342210	55355740	2	neutral	AA	0.427686	germline	1	0.00656304643378356	0.0280607842958737
11	60321250	60447530	2	neutral	AA	100	somatic	0	0.0293649475460353	0.113952919752074
11	64283285	64290050	2	neutral	AA	54.5678	somatic	0	0.231733513227756	0.433408005688763
11	71255745	71566935	2	neutral	AA	1.91439	germline	1	2.27955299673545e-05	0.000261912631858152
11	75053165	75064440	2	neutral	AA	100	somatic	0	0.33806717242225	0.555370056013925
11	77639650	77707300	2	neutral	AA	24.2387	somatic	0	0.0250893676516845	0.113085042946444
11	82499175	82528490	2	neutral	AA	32.251	somatic	0	0.308811723022151	0.434406183804207
11	90276670	90285690	2	neutral	AA	100	somatic	0	0.794165727192717	0.970198598852677
11	91480840	91573295	2	neutral	AA	100	somatic	0	0.0448677249830996	0.125303458189416
11	95375225	95420325	2	neutral	AA	28.7205	somatic	0	0.955247034981342	0.788686654824588
11	96561355	96568120	1	loss	A	-1	germline	1	0.014953138065729	0.0385847947668372
11	101055570	101060080	2	neutral	AA	100	somatic	0	0.737865606811465	0.814014790912788
11	105964705	105975980	2	neutral	AA	54.5678	somatic	0	0.574485599495765	0.919761389182505
11	107119265	107123775	2	neutral	AA	100	somatic	0	0.610568640830613	0.955693694342471
11	124245990	124304620	2	neutral	AA	39.6098	somatic	0	0.0366226015429101	0.154611542035528
11	127725455	127761535	2	neutral	AA	100	germline	1	0.689027355837919	0.96694295685624
11	127851735	127867520	2	neutral	AA	54.5678	somatic	0	0.510020658017025	0.739422461225554
12	2255000	2257255	6	gain	AAAABB	12.882	germline	1	0.083272244250961	0.270050370268994
12	6131345	6138110	1	loss	A	-1	somatic	0	0.00273529409961976	0.00506529220108842
12	24565970	24671955	2	neutral	AA	27.2637	somatic	0	0.036859819603135	0.0646475796763463
12	31878935	31910505	2	neutral	AA	21.8278	somatic	0	0.00178122159701599	0.00144227281991449
12	32142770	32183360	2	neutral	AA	54.5678	somatic	0	0.464475930190557	0.600268846364012
12	34677390	37739680	2	neutral	AA	0.445414	somatic	0	1.84545170004786e-11	1.30386434982199e-09
12	38100480	38195190	2	neutral	AA	28.0612	somatic	0	0.614692970026612	0.912582029900933
12	40118705	40233710	2	neutral	AA	100	somatic	0	0.301299124648048	0.320109931832458
12	41343170	41358955	2	neutral	AA	100	somatic	0	0.787149384976723	0.882418313405009
12	52437770	52514440	2	neutral	AA	15.5953	germline	1	0.00932542877697371	0.0302946526836573
12	54185395	54189905	2	neutral	AA	100	somatic	0	0.641655257623524	0.88278617762672
12	59534255	59545530	2	neutral	AA	11.3733	germline	1	0.684698961908015	0.985931026927189
12	71208390	71210645	0	loss	-	-1	somatic	0	0.0832661722468161	0.270039824411312
12	74920120	75790550	2	neutral	AA	100	germline	1	0.292154669930771	0.414961023344884
12	78205655	78237225	2	neutral	AA	100	germline	1	0.75644510400668	0.797854040841117
12	82262400	82269165	2	neutral	AA	100	somatic	0	0.0283931841511796	0.121405555686023
12	90091760	90098525	1	loss	A	-1	germline	1	0.00271751604892055	0.0050086731047555
12	95616510	95618765	0	loss	-	-1	somatic	0	0.0832678282123756	0.270042700524506
12	111744270	111746525	3	gain	AAB	100	germline	1	0.0837109264111135	0.270811422885244
12	111746525	111748780	3	gain	-	-1	germline	1	0.0833501080745319	0.270185575615298
12	111748780	111877315	3	gain	AAB	0.875795	germline	1	2.51195773472794e-35	0
12	111877315	111879570	2	neutral	AA	100	somatic	0	0.461434176637706	0.690185422920185
12	112932655	112939420	2	neutral	AA	100	somatic	0	0.0846681355395435	0.207373480948897
12	130282625	130316450	2	neutral	AA	36.3913	somatic	0	0.282021148181014	0.681475743076249
12	132654885	132776655	2	neutral	AA	8.34969	germline	1	2.53034254736095e-06	0.000106377653950718
13	19194560	19199070	1	loss	A	-1	somatic	0	0.0145451156890557	0.0372876419793214
13	22020075	22024585	1	loss	A	-1	somatic	0	0.0143172909782422	0.0366638503043092
13	22522940	22531960	4	gain	AABB	70.6134	germline	1	0.0143103204635735	0.0366394464463778
13	22678535	22721380	2	neutral	AA	54.5678	somatic	0	0.357713995869488	0.722897264542104
13	26092605	26130940	2	neutral	AA	100	germline	1	0.0317468521914885	0.0348548245077366
13	26475955	26478210	0	loss	-	-1	germline	1	0.0832661722468161	0.270039824411312
13	31085175	31096450	2	neutral	AA	100	somatic	0	0.739373968377819	0.764743722442202
13	33561165	33570185	1	loss	A	-1	germline	1	0.000537657754135571	0.000675909767916871
13	37498395	37511925	1	loss	A	-1	germline	1	2.23378311513654e-05	1.2457139037636e-05
13	39097190	39126505	2	neutral	AA	100	somatic	0	0.849892910296544	0.984780830458236
13	45417955	45435995	1	loss	A	-1	somatic	0	3.91089784803599e-06	2.06865571807935e-05
13	47842080	47857865	2	neutral	AA	54.5678	somatic	0	0.865812072323773	0.723634568627079
13	48123955	48144250	2	neutral	AA	36.3786	somatic	0	0.0393459925507164	0.0488068417968814
13	50493960	50500725	1	loss	A	-1	somatic	0	0.00273665120500078	0.00505460454978435
13	59583865	59615435	2	neutral	AA	93.3662	somatic	0	0.185196020274839	0.382354415707411
13	61960635	61962890	1	loss	A	-1	somatic	0	0.0833147583238383	0.27012419969059
13	63029505	63056565	2	neutral	AA	19.3649	somatic	0	2.49423479523459e-07	6.70380372924662e-06
13	63056565	63063330	3	gain	AAB	1.02834	germline	1	0.00297228475986057	0.0058938680602989
13	63063330	63065585	3	gain	AAB	1.81786	germline	1	0.0833037140175815	0.270105021801217
13	63065585	63067840	4	gain	AABB	1.41635	germline	1	0.0832750043714165	0.270055163940054
13	71902930	71907440	1	loss	A	-1	somatic	0	0.0148624656820546	0.0382629273127423
13	97001080	97104810	2	neutral	AA	55.2644	somatic	0	0.491452963242228	0.400576359544778
13	98602130	98606640	1	loss	A	-1	somatic	0	0.0143139796104167	0.0366436439470935
13	105096530	105105550	2	neutral	AA	100	somatic	0	0.616995256633415	0.867527285998962
13	109020230	109024740	1	loss	A	-1	somatic	0	0.0158425522258866	0.0412750519309012
13	109024740	109036015	2	neutral	AA	100	somatic	0	0.194499287498571	0.338526222230182
13	109216415	109218670	0	loss	-	-1	somatic	0	0.0832761084403491	0.270057081425885
13	114154865	114157120	1	loss	A	-1	somatic	0	0.0832965358544934	0.270092556706097
14	0	16091680	4	gain	AAAB	-1	germline	1	NA	NA
14	16091680	16093935	8	gain	-	-1	germline	1	0.0832705882142595	0.270047494096171
14	16093935	18680420	4	gain	AAAB	-1	germline	1	0.0589172216338626	0.138969975744896
14	18693950	19783115	4	gain	AAAB	-1	somatic	0	0.000532368926857891	0.000671511572102768
14	19783115	19943220	4	gain	AAAB	0.689663	germline	1	1.40550690087466e-28	0
14	19949985	19954495	4	gain	AABB	2.69594	germline	1	0.0143099720164363	0.0366383971369344
14	23783485	23819565	2	neutral	AA	100	somatic	0	0.661025954942387	0.962179454194361
14	24520870	24669700	2	neutral	AA	63.7948	germline	1	0.0249380393909999	0.0248779671835984
14	34348160	34350415	0	loss	-	-1	somatic	0	0.0832705882142595	0.270047494096185
14	41140220	41201105	1	loss	A	-1	germline	1	2.24238431929782e-17	0
14	47111460	47391080	2	neutral	AA	68.2829	somatic	0	0.973803267336359	0.439836660071268
14	49149980	49174785	2	neutral	AA	36.3786	somatic	0	0.457147091466144	0.52081550230606
14	61561500	61798275	2	neutral	AA	39.4915	somatic	0	0.209489403398925	0.32531501630167
14	73533295	73580650	1	loss	A	-1	somatic	0	0.000108076727691124	9.13058632733277e-05
14	73873800	73914390	2	neutral	AA	36.3791	somatic	0	7.34462032278921e-05	0.00277846865024101
14	79639835	79648855	1	loss	A	-1	somatic	0	0.000536673976147089	0.000676364622641312
14	84185915	84278370	2	neutral	AA	100	somatic	0	0.315649526381492	0.569218721363552
14	85929030	86091390	2	neutral	AA	65.4791	somatic	0	0.174388395927976	0.510150129841326
14	99925815	99928070	5	gain	AAABB	36.6614	somatic	0	0.0832733482902502	0.270052287729964
14	103254195	103258705	2	neutral	AA	54.5678	somatic	0	0.0767112663570533	0.122887102244006
15	0	17025250	5	gain	-	-1	germline	1	NA	NA
15	17025250	17027505	3	gain	-	-1	germline	1	0.0832954315661828	0.270090639036409
15	17027505	17079370	5	gain	-	-1	germline	1	NA	NA
15	17079370	17081625	9	gain	-	-1	germline	1	0.0832705882142595	0.270047494096171
15	17081625	20340100	5	gain	-	-1	germline	1	0.900903274159697	0.765891986038956
15	20340100	20342355	13	gain	-	-1	germline	1	0.0832672762208915	0.270041741817609
15	20342355	20344610	6	gain	-	-1	germline	1	0.0832716922357629	0.270049411542235
15	20344610	20419025	5	gain	-	-1	germline	1	9.22579402511348e-09	5.58366131109267e-10
15	20644525	20669330	4	gain	-	-1	germline	1	4.32664111500786e-08	4.12791900661347e-09
15	22220770	22252340	3	gain	AAB	1.26219	germline	1	2.0531363776233e-07	3.1392682786624e-08
15	23821820	23839860	2	neutral	AA	54.5678	somatic	0	0.578700025651644	0.491319968677665
15	38229015	38244800	2	neutral	AA	36.3795	somatic	0	0.817291731061707	0.99848581003253
15	48175820	48392300	2	neutral	AA	100	somatic	0	0.327626438936659	0.380877107491277
15	61394630	61405905	1	loss	A	-1	germline	1	0.000108426225402888	9.16004241535706e-05
15	71415850	71422615	1	loss	A	-1	germline	1	0.0143361263302877	0.0367182196283338
15	72092350	72096860	1	loss	A	-1	somatic	0	0.0143213875521361	0.036659913236563
15	72795910	72868070	2	neutral	AA	40.8068	somatic	0	0.957231644077037	0.894204417135551
15	75515440	75634955	2	neutral	AA	54.8443	somatic	0	5.58982010554364e-18	3.36397576461422e-14
15	76591075	76602350	1	loss	A	-1	germline	1	0.000112773342209289	0.000103205730287326
16	845625	847880	4	gain	AAAA	5.64961	germline	1	0.0832821810314342	0.270067627775506
16	1023770	1026025	4	gain	AABB	11.4401	germline	1	0.0832750043714165	0.270055163940054
16	19668110	19722230	2	neutral	AA	22.4505	somatic	0	0.0706434071615733	0.21460036992206
16	21557800	21582605	4	gain	AABB	4.57849	germline	1	9.23680848653314e-09	5.59356450047233e-10
16	22615395	22642455	4	gain	AABB	5.50938	germline	1	1.9774594220689e-09	7.57137685880593e-11
16	22642455	22698830	4	gain	AAAB	4.36676	germline	1	9.8863438013014e-17	0
16	28999300	29006065	2	neutral	AA	100	somatic	0	0.87409952654487	0.913033482315911
16	34061775	34066285	14	gain	AAAAAAAAABBBBB	2.80891	germline	1	0.0143067492352063	0.0366328886937096
16	34084325	34086580	12	gain	AAAAAAAAAAAA	27.7217	germline	1	0.0832678282123756	0.270042700524492
16	34095600	34100110	6	gain	AAAABB	6.97978	germline	1	0.0143082298930135	0.036634987062825
16	34100110	34160995	2	neutral	AA	6.7579	somatic	0	0.786277740585677	0.51734952862564
16	34160995	34201585	2	neutral	AA	-1	somatic	0	0.0143118014474071	0.0366441686642603
16	34201585	34954755	2	neutral	AA	4.7923	somatic	0	1.57886492423531e-15	4.89275286952306e-12
16	34954755	34957010	2	neutral	AA	-1	germline	1	NA	NA
16	34957010	35110350	2	neutral	AA	34.6933	somatic	0	0.590851339669089	0.916444713389373
16	35992055	36089020	2	neutral	AA	3.82617	germline	1	3.44606526482149e-05	4.42349090880034e-05
16	36122845	36127355	4	gain	-	-1	germline	1	0.0143145024130496	0.0366520402107294
16	48475735	48477990	0	loss	-	-1	somatic	0	0.0832733482902502	0.270052287729978
16	55766150	55788700	1	loss	A	-1	germline	1	0.000108620370749707	9.17037335625981e-05
16	58891580	58968250	2	neutral	AA	36.3787	somatic	0	0.866556165896175	0.834326194491434
16	60769995	60817350	2	neutral	AA	100	somatic	0	0.615417816786718	0.921478035623294
16	65410785	65491965	2	neutral	AA	30.2259	somatic	0	0.357364882844755	0.334980178167055
16	70150795	70162070	4	gain	AAAB	5.26194	germline	1	0.000107591971660117	9.0862455736529e-05
16	74372155	74374410	4	gain	AABB	18.4208	germline	1	0.0832761084403491	0.270057081425871
16	75289940	75463575	2	neutral	AA	36.8459	somatic	0	1.99176513911034e-09	3.43435978544804e-08
16	77892210	77912505	2	neutral	AA	100	somatic	0	0.016816991393728	0.0134503601578699
16	79642090	79705230	2	neutral	AA	100	somatic	0	0.794187133664455	0.201476204802136
16	86720535	86749850	2	neutral	AA	36.3818	somatic	0	0.704298041295734	0.681358151006014
16	87658615	87672145	3	gain	AAB	2.3161	germline	1	2.21542716246103e-05	1.23299333805171e-05
17	1916750	1959595	2	neutral	AA	31.5777	somatic	0	0.0334864689744877	0.105471806420173
17	21289455	21302985	4	gain	AABB	0.250593	germline	1	2.21179320588029e-05	1.23111453260716e-05
17	21853205	21857715	4	gain	-	-1	somatic	0	0.0143108431483128	0.0366420698350207
17	21968210	21990760	10	gain	-	-1	somatic	0	0.000532108215487733	0.000671050168168819
17	22123805	22155375	5	gain	AAABB	0.173101	germline	1	9.14088665732596e-11	1.38478117861496e-12
17	26782635	26832245	3	gain	-	-1	somatic	0	1.11644906083183e-10	2.00569838515463e-09
17	26877345	26879600	5	gain	-	-1	somatic	0	0.0832739003143413	0.270053246464177
17	26935975	26940485	13	gain	AAAAAAAABBBBB	51.3688	germline	1	0.0143070976131181	0.0366334132761296
17	34226390	34282765	2	neutral	AA	21.8861	somatic	0	0.606884647187453	0.749302583090657
17	39239255	39243765	2	neutral	AA	100	germline	1	0.0940031380481507	0.24568763171208
17	41570925	41595730	2	neutral	AA	27.2839	somatic	0	0.81991396651234	0.936014930893467
17	42008395	42044475	2	neutral	AA	100	somatic	0	0.276900103770283	0.605569155080732
17	44107800	44265650	2	neutral	AA	17.1783	somatic	0	1.59073001360246e-05	0.000112188601221863
17	46931060	46996455	2	neutral	AA	40.1304	somatic	0	0.783303723525412	0.569031737084939
17	56634325	56677170	2	neutral	AA	27.3215	somatic	0	0.758606753186424	0.919761836589263
17	59606415	59658280	2	neutral	AA	27.284	somatic	0	0.0979771668030247	0.237842471131379
17	70044810	70103440	2	neutral	AA	13.6925	germline	1	0.12881509439133	0.110053951573146
17	81227355	81281475	2	neutral	AA	17.3346	somatic	0	0.0017226483083011	0.00641932256672384
17	82808110	82857720	2	neutral	AA	100	somatic	0	0.00325742516721711	0.0298458888641858
18	5306015	5308270	1	loss	A	-1	somatic	0	0.0832882539812236	0.270078174425786
18	5324055	5326310	0	loss	-	-1	germline	1	0.0832755564044007	0.270056122681734
18	11509520	11511775	0	loss	-	-1	germline	1	0.0832744523413967	0.270054205200887
18	29594620	29596875	0	loss	-	-1	germline	1	0.0832727962691235	0.270051328998251
18	40680200	40686965	1	loss	A	-1	germline	1	0.0027153620395785	0.00498678786408158
18	41284540	41289050	0	loss	-	-1	germline	1	0.0143087525103948	0.0366383971369382
18	47402355	47406865	2	neutral	AA	30.0867	somatic	0	0.805134730874652	0.990142392185198
18	47476770	47499320	2	neutral	AA	43.1956	somatic	0	0.217689596960114	0.526468896238882
18	48520835	48563680	2	neutral	AA	21.8271	somatic	0	0.0490797708037525	0.0926394797221471
18	50737500	50791620	2	neutral	AA	35.4707	somatic	0	0.197469840727392	0.0765170911423279
18	51057710	51068985	2	neutral	AA	100	somatic	0	0.727994003644394	0.850241573517962
18	51450080	51452335	1	loss	A	-1	somatic	0	0.0833097882392542	0.270115569517389
18	51898825	51905590	2	neutral	AA	100	somatic	0	0.0380833173030176	0.139672489937004
18	56701975	56710995	2	neutral	AA	100	germline	1	0.850499783719807	0.927071950757552
18	58810400	58814910	2	neutral	AA	100	germline	1	0.0511247789976988	0.110360279361107
18	60343800	60357330	2	neutral	AA	54.5679	germline	1	0.853733375852798	0.964241410329263
18	64544865	64547120	1	loss	A	-1	somatic	0	0.0833368504945858	0.27016255845089
18	67061445	67102035	2	neutral	AA	41.9243	somatic	0	0.484379486131287	0.894650018113776
18	69077415	69088690	1	loss	A	-1	germline	1	0.000110270581832996	9.71096400051996e-05
18	69541945	69550965	1	loss	A	-1	germline	1	0.000537759940477201	0.000679566372909779
18	72284025	72288535	2	neutral	AA	54.5678	somatic	0	0.86999907401765	0.987638986842889
18	78731070	78834800	2	neutral	AA	100	somatic	0	0.0267896356805363	0.0234976080147284
18	79200110	79202365	4	gain	AABB	100	germline	1	0.0832832851774423	0.27006954532592
18	79520320	79522575	1	loss	A	-1	somatic	0	0.0832810768972841	0.270065710235043
19	441980	502865	2	neutral	AA	13.4944	somatic	0	2.21759401768899e-05	0.000366766560757181
19	3950760	4043215	2	neutral	AA	40.1467	germline	1	0.000588234519204379	0.00260807638043636
19	7448265	7450520	4	gain	AABB	100	germline	1	0.0832783166137871	0.270060916427318
19	7450520	7452775	12	gain	AAAAAAABBBBB	20.9717	germline	1	0.0832683802068239	0.270043659233859
19	8880190	8916270	2	neutral	AA	3.92775	germline	1	0.580141905188507	0.665155942668284
19	14934865	14939375	1	loss	A	-1	somatic	0	0.0143142410096277	0.0366439063048571
19	16693765	16711805	2	neutral	AA	100	somatic	0	0.00012923426866503	0.0010786775751791
19	22015565	22096745	2	neutral	AA	45.7615	somatic	0	0.00693928654226515	0.0743449764353975
19	24329195	24405865	4	gain	AABB	0.174156	germline	1	5.26343980426725e-22	0
19	24414885	24419395	3	gain	AAB	27.8751	somatic	0	0.0144398924475133	0.0370212929888989
19	27242655	27337365	2	neutral	AA	1.35466	somatic	0	0.00238974882278274	0.00514415061081164
19	27337365	27344130	3	gain	AAB	1.32448	germline	1	0.126607763407882	0.138994826851771
19	27344130	27346385	3	gain	AAB	3.97848	germline	1	0.0833070271849284	0.27011077506367
19	27346385	27380210	6	gain	AAAABB	0.541956	germline	1	4.24342110701054e-10	1.02289288150814e-11
19	27380210	27382465	2	neutral	AA	9.92179	germline	1	0.600949565487759	0.790507535738503
19	27382465	27398250	5	gain	AAABB	0.283414	germline	1	4.59642658418003e-06	1.66482961405645e-06
19	27398250	27400505	3	gain	AAB	3.81102	germline	1	0.0832888060853555	0.270079133227068
19	27470410	27472665	0	loss	-	-1	somatic	0	0.0832705882142595	0.270047494096185
19	27472665	27483940	2	neutral	AA	100	somatic	0	0.353165768229691	0.218336007571897
19	28428785	28699385	2	neutral	AA	7.25984	somatic	0	0.651237675065369	0.817080551711018
19	29511185	29515695	1	loss	A	-1	germline	1	0.0143504418399979	0.0367505594360581
19	31425680	31470780	2	neutral	AA	25.1224	somatic	0	0.859326357800057	0.864232417090373
19	34391005	34393260	5	gain	AAABB	2.36209	germline	1	0.0832727962691235	0.270051328998237
19	35360655	35369675	1	loss	A	-1	germline	1	0.000537747553290282	0.000680831564967344
19	47068615	47088910	2	neutral	AA	36.3858	somatic	0	0.333618723669003	0.894972169140538
19	48638095	48766630	2	neutral	AA	18.4488	germline	1	5.5385299950666e-12	7.11971370748188e-10
19	49109390	49145470	2	neutral	AA	21.8275	somatic	0	0.000122685933407563	0.00119723974701413
19	50327090	50406015	2	neutral	AA	36.3786	somatic	0	0.000199684303766752	0.00184426891090428
19	53373595	53459285	2	neutral	AA	70.7178	somatic	0	0.00291126624862296	0.0171721654632816
19	56174305	56181070	2	neutral	AA	14.7058	somatic	0	0.514771109269539	0.655793533049792
20	60885	63140	8	gain	-	-1	germline	1	0.0832705882142595	0.270047494096171
20	65395	67650	4	gain	-	-1	germline	1	0.0832744523413967	0.270054205200873
20	1583010	1603305	1	loss	A	-1	germline	1	2.07267042252937e-07	3.11640807604263e-08
20	26315850	26322615	1	loss	A	-1	somatic	0	0.0143163323549125	0.0366575511734678
20	28773800	28776055	4	gain	-	-1	germline	1	0.0832750043714165	0.270055163940054
20	28780565	28789585	7	gain	-	-1	germline	1	0.00270037520850376	0.00495822312623961
20	28803115	28832430	7	gain	-	-1	germline	1	4.323766462849e-08	4.12511225178491e-09
20	28836940	28839195	1	loss	A	-1	germline	1	0.0849119548935631	0.272886536229814
20	29263135	29265390	17	gain	-	-1	germline	1	0.0832661722468161	0.270039824411298
20	29265390	29281175	3	gain	-	-1	germline	1	3.90174993490991e-05	9.90979860272523e-05
20	29283430	29389415	3	gain	-	-1	germline	1	2.00717838148195e-09	8.3142936979641e-11
20	29409710	29411965	5	gain	-	-1	germline	1	0.0832727962691235	0.270051328998237
20	29890025	29894535	4	gain	-	-1	germline	1	0.0143109302640732	0.0366397087778471
20	30812320	30816830	7	gain	-	-1	germline	1	0.0143078814907805	0.0366342001620831
20	30938600	30943110	5	gain	-	-1	germline	1	0.0143085783027301	0.0366352493663585
20	31053605	31073900	44	gain	-	-1	germline	1	0.00269985156506053	0.00495758414510916
20	31166355	31168610	5	gain	-	-1	somatic	0	0.0832739003143413	0.270053246464177
20	31184395	31188905	19	gain	-	-1	germline	1	0.0143070105179386	0.036633937865122
20	31188905	31191160	4	gain	-	-1	germline	1	0.0832750043714165	0.270055163940054
20	31240770	31243025	56	gain	-	-1	germline	1	0.0832650682845973	0.270037907014926
20	37333780	37369860	2	neutral	AA	54.5679	somatic	0	0.246819538709543	0.205281068806013
20	38010280	38021555	2	neutral	AA	54.5787	somatic	0	0.824106823648794	0.928152186254585
20	38319215	38323725	2	neutral	AA	21.9489	somatic	0	0.962092787437073	0.920064446902266
20	40871875	40876385	2	neutral	AA	29.6728	somatic	0	0.963563163723354	0.992026415938879
20	41282285	41284540	2	neutral	AA	100	somatic	0	0.796708179301299	0.896309881642503
20	43697390	43699645	1	loss	A	-1	somatic	0	0.0850309115244594	0.273091395954364
20	44689590	44700865	2	neutral	AA	100	somatic	0	0.471529331764723	0.695917825718442
20	46786740	46791250	3	gain	AAB	24.3114	somatic	0	0.0145193312326246	0.0371366032290517
20	49359695	49398030	2	neutral	AA	27.3994	somatic	0	0.31146027873739	0.306227370667979
20	51436550	51456845	2	neutral	AA	36.3884	somatic	0	0.280875628357568	0.579606932857664
20	53878715	53917050	2	neutral	AA	32.51	somatic	0	0.182468799722088	0.217360978224026
20	53917050	53941855	2	neutral	AA	57.5492	somatic	0	0.51226604301844	0.313030051068228
20	55051315	55229460	2	neutral	AA	30.3608	somatic	0	0.380357032905685	0.534891141778457
20	60993240	61015790	3	gain	AAB	4.03443	germline	1	4.34282154237909e-08	4.14821288430289e-09
20	61545715	61566010	2	neutral	AA	12.4628	germline	1	0.624668777265856	0.778682376374439
20	62064365	62066620	1	loss	A	-1	somatic	0	0.0832899103025133	0.270081050837126
20	62312415	62350750	2	neutral	AA	90.9861	somatic	0	0.00388490288492103	0.00534534688308752
20	62508600	62510855	1	loss	A	-1	somatic	0	0.0832965358544934	0.270092556706097
20	62607820	62610075	2	neutral	AA	100	somatic	0	0.149519883535279	0.370963746752313
20	63043035	63052055	2	neutral	AA	11.183	somatic	0	0.541234533241988	0.491537887554673
20	63351970	63358735	2	neutral	AA	12.8856	somatic	0	0.0602311367676187	0.209754389205616
21	7917305	7919560	6	gain	-	-1	germline	1	0.0832727962691235	0.270051328998237
21	7919560	7926325	4	gain	-	-1	germline	1	0.00270066087131427	0.00495854264511453
21	8988430	8995195	9	gain	AAAAAABBB	1.04732	germline	1	0.00270032760071978	0.00495811662414214
21	10652620	10654875	4	gain	AABB	100	germline	1	0.0832739003143413	0.270053246464177
21	10654875	10661640	6	gain	AAAABB	16.7024	germline	1	0.00270045455651476	0.00495832963043408
21	10661640	10666150	4	gain	AABB	6.88563	germline	1	0.014310059127519	0.0366386594618303
21	10666150	10668405	5	gain	AAABB	100	germline	1	0.0832727962691235	0.270051328998237
21	10668405	10690955	4	gain	AAAA	2.6829	germline	1	2.03672618969681e-07	3.0491872360372e-08
21	10690955	10693210	56	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBB	100	germline	1	0.0832650682845973	0.270037907014926
21	10693210	10704485	4	gain	AABB	9.07719	germline	1	0.000107592583976504	9.08575766369601e-05
21	10704485	10708995	6	gain	AAAAAA	2.37528	germline	1	0.0143082298930135	0.036634987062825
21	10708995	10715760	4	gain	AAAA	2.46048	germline	1	0.00270104179801568	0.00495912847874047
21	10715760	10722525	6	gain	AAAABB	0.862839	germline	1	0.00270048629631571	0.00495832963043408
21	10722525	10731545	4	gain	AAAB	99.1617	germline	1	0.000532237022703643	0.000671117437725743
21	10731545	10733800	5	gain	AAABB	100	germline	1	0.0832727962691235	0.270051328998237
21	10733800	10738310	4	gain	AAAA	1.75084	germline	1	0.0143093622519555	0.0366365609086751
21	10751840	10754095	10	gain	AAAAAAABBB	1.35852	germline	1	0.0832694842046132	0.270045576660046
21	10763115	10765370	4	gain	AABB	32.6576	germline	1	0.0832783166137871	0.270060916427318
21	19940965	20051460	2	neutral	AA	16.4363	somatic	0	0.169656685585688	0.103545662440438
21	20362650	20391965	2	neutral	AA	36.4156	somatic	0	0.783535696122702	0.757911852561899
21	20585895	20590405	1	loss	A	-1	somatic	0	0.0145226844612671	0.0371814865644549
21	21210530	21253375	2	neutral	AA	100	somatic	0	0.279430221261433	0.140496561679024
21	23296405	23314445	2	neutral	AA	36.5238	somatic	0	0.894772415916478	0.648119138060721
21	24987655	24994420	2	neutral	AA	100	germline	1	0.30879978854662	0.588687324801639
21	25519835	25641605	2	neutral	AA	55.2369	somatic	0	0.617436515437378	0.697137784035676
21	30156115	30174155	2	neutral	AA	100	germline	1	0.228538105394503	0.343385363163538
21	31784225	31786480	3	gain	AAB	29.4722	germline	1	0.0832998487905801	0.270098309774737
21	32300620	32363760	2	neutral	AA	32.9431	somatic	0	0.340828820413811	0.662731562850187
21	33186835	33193600	2	neutral	AA	10.2576	somatic	0	0.781078590907322	0.977107529982788
21	36481390	36497175	2	neutral	AA	21.8412	somatic	0	0.0558951934158968	0.0459129147027375
21	40944035	40946290	2	neutral	AA	100	somatic	0	0.260504294434114	0.504371233677894
21	41473960	41476215	1	loss	A	-1	somatic	0	0.0832954315661828	0.270090639036423
21	41805445	41807700	4	gain	AAAA	9.99412	somatic	0	0.0832860455943417	0.270074339245437
21	42822450	42851765	2	neutral	AA	100	somatic	0	0.905425181098033	0.871064385453582
21	43262175	43264430	6	gain	AAABBB	42.7935	germline	1	0.0832716922357629	0.270049411542235
21	43334335	43338845	3	gain	AAA	7.84289	somatic	0	0.0143294093705291	0.0366827533793467
21	43591405	43611700	2	neutral	AA	27.2839	somatic	0	0.00988718847046982	0.0141984511243053
21	43672585	43719940	2	neutral	AA	27.2839	germline	1	0.0141507435905536	0.00681125538797733
21	44010835	44089760	2	neutral	AA	18.1906	somatic	0	0.574360930465178	0.793951452801443
21	44335555	44437030	2	neutral	AA	90.0364	somatic	0	0.110650649409678	0.248377619445519
21	45490115	45532960	2	neutral	AA	17.91	somatic	0	0.217544069820963	0.193254202536751
21	45553255	45555510	1	loss	A	-1	somatic	0	0.0832910145315297	0.270082968457109
21	45968175	45970430	1	loss	A	-1	somatic	0	0.083279972774992	0.270063792704505
22	11211860	11214115	5	gain	-	-1	germline	1	0.0832727962691235	0.270051328998237
22	11626780	11629035	4	gain	AABB	17.8036	germline	1	0.0832750043714165	0.270055163940054
22	15933830	16567485	2	neutral	AA	9.97001	germline	1	0.681056675643924	0.211143452608663
22	17875385	17877640	4	gain	AAAA	1.88202	germline	1	0.0832750043714165	0.270055163940054
22	23733875	23740640	2	neutral	AA	100	germline	1	0.048727387074729	0.184608626785384
22	24541165	24581755	2	neutral	AA	100	somatic	0	0.86123088909689	0.962945700229104
22	27619240	27635025	2	neutral	AA	36.3786	somatic	0	0.63810064212188	0.523971979684173
22	29114305	29118815	2	neutral	AA	100	germline	1	0.96445610898871	0.877572555316281
22	29118815	29121070	4	gain	AAAA	12.0065	germline	1	0.0832821810314342	0.270067627775506
22	29558540	29583345	2	neutral	AA	21.8798	somatic	0	0.0455434615300821	0.120551930092561
22	30636430	30701825	2	neutral	AA	27.2848	somatic	0	0.00193098749082081	0.0164012966797862
22	34467675	34469930	1	loss	A	-1	somatic	0	0.083279972774992	0.270063792704505
22	36749735	36751990	0	loss	-	-1	germline	1	0.0832661722468161	0.270039824411312
22	38109500	38213230	2	neutral	AA	11.4314	somatic	0	0.0500777281984824	0.0328565814515506
22	38860415	38864925	2	neutral	AA	54.5678	germline	1	0.992167963499752	0.7881552589004
22	39379065	39421910	2	neutral	AA	76.4325	somatic	0	0.116161349089792	0.524384021891774
22	47300880	47330195	2	neutral	AA	36.5354	somatic	0	0.582842183696302	0.430275471503449
22	47650405	47713545	2	neutral	AA	8.39995	somatic	0	0.0828475432548693	0.0760650878756588
22	48597505	48608780	2	neutral	AA	12.2622	somatic	0	0.435150121231438	0.625065013714196
22	48841045	48859085	2	neutral	AA	41.6188	somatic	0	0.721160902870772	0.415137247548192
22	50218850	50223360	2	neutral	AA	54.5678	somatic	0	0.0325536706758326	0.0807326963334234
X	4219105	4534805	2	neutral	AA	40.8969	somatic	0	0.122919167792798	0.160840812576035
X	8305165	8332225	2	neutral	AA	100	somatic	0	0.982979274885408	0.905492003713997
X	38946105	39000225	2	neutral	AA	100	germline	1	0.015711188997174	0.0201207880043175
X	51468120	51779310	2	neutral	AA	43.7474	somatic	0	0.808721549447945	0.227655235133021
X	52336295	52507675	2	neutral	AA	36.3788	germline	1	0.0259246002601255	0.022372619846753
X	58487935	58496955	1	loss	A	-1	somatic	0	0.00271249245376774	0.00498042119935937
X	58505975	62700275	2	neutral	AA	3.66828	somatic	0	2.88380041560736e-09	3.09612217863631e-07
X	83820605	83955905	2	neutral	AA	83.6279	somatic	0	0.55423392016161	0.673775722048156
X	98121815	98142110	2	neutral	AA	44.4113	somatic	0	0.245164435303894	0.425116451275039
X	98843415	98863710	2	neutral	AA	100	somatic	0	0.184437136479908	0.280717097048605
X	99880715	99973170	2	neutral	AA	45.7671	somatic	0	0.606163283313216	0.583382029550985
X	101222440	101278815	2	neutral	AA	93.2909	somatic	0	0.861254512155979	0.856440404954
X	108772180	108776690	1	loss	A	-1	somatic	0	0.0143165937920236	0.036654401963139
X	113273160	113279925	2	neutral	AA	100	somatic	0	0.440996269570594	0.457357848498958
X	114012800	114053390	2	neutral	AA	100	somatic	0	0.467348480885017	0.540805384735769
X	125272015	125274270	0	loss	-	-1	germline	1	0.0832661722468161	0.270039824411312
X	148367725	148410570	2	neutral	AA	100	somatic	0	0.312085411705597	0.52803998374515
X	148426355	148430865	1	loss	A	-1	somatic	0	0.0147612177055445	0.0379837274269511
X	150286730	150300260	2	neutral	AA	54.5678	somatic	0	0.970350178184182	0.900203483294484
X	155096645	155153020	2	neutral	AA	100	somatic	0	0.505122596784221	0.835804256933008
