chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	820712	906104	2	neutral	AA	5.81245	somatic	0	0.628098002883215	0.680244291113944
1	1202604	1413712	2	neutral	AA	3.75726	somatic	0	0.390906636776406	0.470857864295321
1	1890484	1964016	2	neutral	AA	19.8187	somatic	0	0.189261449629058	0.553886220538576
1	5669080	5676196	3	gain	AAB	2.94022	germline	1	0.00270295389203047	0.0049626208265906
1	16613488	16622976	8	gain	AAAAABBB	48.7423	germline	1	0.00270015414620671	0.00495792348501012
1	16888640	16943196	4	gain	AABB	0.937066	germline	1	1.97890883243555e-09	7.56902318599373e-11
1	19566628	19623556	2	neutral	AA	100	somatic	0	0.102431932753892	0.180699211306311
1	22619392	22683436	2	neutral	AA	36.5359	somatic	0	0.00234815264059649	0.00115324656064164
1	25812104	25864288	2	neutral	AA	100	somatic	0	0.196668384091051	0.118180173582359
1	27092984	27107216	2	neutral	AA	21.9588	somatic	0	0.882998920592569	0.756299860745183
1	31431372	31436116	3	gain	AAA	61.2079	somatic	0	0.032532511777185	0.0949901825709654
1	40172192	40191168	2	neutral	AA	54.5678	somatic	0	0.656716649310285	0.600670028164648
1	46144888	46258744	2	neutral	AA	39.9872	somatic	0	0.498949689670125	0.348762719358351
1	46809048	47107920	2	neutral	AA	18.2426	somatic	0	0.000788361410498811	0.0124482855439303
1	48146856	48255968	2	neutral	AA	18.2515	somatic	0	0.953468750908803	0.457747088735373
1	49306764	49373180	2	neutral	AA	73.9928	somatic	0	0.438013503677766	0.609256508119752
1	55661352	55668468	1	loss	A	-1	somatic	0	0.00393134316593228	0.00947577416892675
1	61415824	61441916	2	neutral	AA	100	somatic	0	0.426548372828467	0.573133451846821
1	67013744	67122856	2	neutral	AA	22.1006	somatic	0	0.675550511353667	0.712953899652537
1	72300932	72346000	1	loss	A	-1	germline	1	1.02063116803372e-12	3.44169137633799e-15
1	75911116	75987020	2	neutral	AA	54.5873	somatic	0	0.709894317841093	0.693851499576703
1	89009300	89014044	1	loss	A	-1	somatic	0	0.014474918826151	0.0371273427300842
1	105473352	105480468	1	loss	A	-1	somatic	0	0.00315662505242093	0.00600087274426275
1	110836444	110845932	1	loss	A	-1	somatic	0	0.000815676419624139	0.00126872746055451
1	112081744	112086488	2	neutral	AA	100	somatic	0	0.413965362388283	0.703562990636911
1	124942728	124975936	3	gain	-	-1	germline	1	4.34628536059485e-08	4.14374023982589e-09
1	125068444	125073188	3	gain	-	-1	somatic	0	0.014325453904521	0.0366751271065995
1	125080304	125082676	9	gain	-	-1	germline	1	0.0832685723953602	0.270043969107853
1	125082676	125085048	5	gain	-	-1	germline	1	0.0832813209886682	0.270066110226148
1	125085048	125163324	3	gain	-	-1	germline	1	0.00972896508259483	0.00967842098328897
1	125163324	125165696	5	gain	-	-1	germline	1	0.08327958245103	0.270063090904717
1	125165696	143750316	1	loss	A	-1	germline	1	1.34513927479345e-37	0
1	152583644	152614480	1	loss	A	-1	germline	1	6.21864715758735e-09	1.59430246782222e-10
1	152790008	152797124	1	loss	A	-1	somatic	0	0.00449279063507026	0.00932352653779045
1	152908608	152965536	2	neutral	AA	99.0216	somatic	0	0.898828993061338	0.93249255952277
1	153124460	153155296	2	neutral	AA	54.5716	somatic	0	0.190257350957154	0.580656748097178
1	154125444	154146792	2	neutral	AA	36.3786	somatic	0	0.0234947187918738	0.0839752183039266
1	156718040	156784456	2	neutral	AA	100	somatic	0	0.357021535487295	0.542391402060926
1	169258804	169273036	1	loss	A	-1	germline	1	7.23302761920319e-05	3.47231896470346e-05
1	180513944	180537664	2	neutral	AA	54.5686	germline	1	0.852528889893685	0.940375687694149
1	194480280	194487396	1	loss	A	-1	somatic	0	0.0207449629846514	0.0563811912060319
1	198000328	198137904	2	neutral	AA	18.0514	somatic	0	0.00297996082670711	0.00581473656366482
1	202165560	202179792	2	neutral	AA	54.5678	somatic	0	0.226327573940971	0.348797059311416
1	202926972	203195008	2	neutral	AA	100	somatic	0	0.00500127281595334	0.0254505248130082
1	206546644	206563248	2	neutral	AA	100	somatic	0	0.952232337778328	0.939821316302224
1	222199472	222206588	1	loss	A	-1	somatic	0	0.00476784442221742	0.00957879275375007
1	224011680	224014052	8	gain	AAAAAAAA	2.537	germline	1	0.0832691518425763	0.270044975493574
1	228067800	228072544	1	loss	A	-1	somatic	0	0.0145781902840599	0.0374483598505201
1	230553656	230579748	2	neutral	AA	100	somatic	0	0.336876638859293	0.547483420408325
1	231841652	231853512	3	gain	-	-1	germline	1	0.000107770319060664	9.09629372713994e-05
1	234775816	234782932	6	gain	AAAABB	3.51569	germline	1	0.00270088715672628	0.00495915334703911
1	234889672	234934740	2	neutral	AA	100	somatic	0	0.17918648871781	0.178107669585873
1	236097020	236099392	6	gain	AAAABB	65.6232	germline	1	0.08327958245103	0.270063090904717
2	3178480	3183224	4	gain	-	-1	germline	1	0.014312278962496	0.0366409654043819
2	33943320	33993132	1	loss	A	-1	germline	1	3.94166204415049e-14	1.11022302462516e-16
2	34472276	34505484	1	loss	A	-1	germline	1	2.92806788871551e-09	1.04270481138258e-10
2	35357032	35378380	2	neutral	AA	36.3937	somatic	0	0.83204622448569	0.511249028498689
2	36033052	36078120	2	neutral	AA	62.087	somatic	0	0.605735138379731	0.576588269856855
2	36592844	36597588	2	neutral	AA	100	somatic	0	0.938428890726967	0.856001729618703
2	40898024	40917000	2	neutral	AA	100	somatic	0	0.370200727537425	0.126229483092165
2	46344136	46363112	2	neutral	AA	100	somatic	0	0.370790019183554	0.360858385591694
2	48623628	48630744	1	loss	A	-1	germline	1	0.00591426011547133	0.00914346640507158
2	52520824	52558776	1	loss	A	-1	germline	1	2.88992441240481e-10	5.60418378370287e-12
2	55687444	55713536	2	neutral	AA	100	somatic	0	0.46906521393912	0.607392184444872
2	56081196	56093056	2	neutral	AA	100	somatic	0	0.036064475990057	0.122442754419658
2	64352360	64364220	2	neutral	AA	100	somatic	0	0.440512331799807	0.627197907897669
2	74487916	74492660	2	neutral	AA	54.5678	somatic	0	0.456212662193993	0.84636809106116
2	86691856	86763016	2	neutral	AA	43.2574	somatic	0	0.788410967541698	0.351704426169889
2	89773084	89782572	5	gain	-	-1	germline	1	0.000532390226415259	0.000671248066653973
2	89782572	89792060	4	gain	-	-1	germline	1	0.00270205368457652	0.00496077495608738
2	89792060	89813408	4	gain	AAAB	1.1752	germline	1	9.65307853287566e-07	2.25564840139469e-07
2	89813408	89825268	3	gain	AAB	3.79869	germline	1	0.000952892253385773	0.00333983787058889
2	89825268	89827640	8	gain	AAAAABBB	18.8699	germline	1	0.0832691518425763	0.270044975493574
2	89827640	89841872	32	gain	AAAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	8.25476	germline	1	2.20935058855243e-05	1.22898102059565e-05
2	89841872	89851360	4	gain	AAAB	0.769029	germline	1	0.000532506178577941	0.000671359066524158
2	91412136	91414508	5	gain	-	-1	germline	1	0.0832824800300934	0.270068123120791
2	96934152	96938896	2	neutral	AA	100	somatic	0	0.532376168784702	0.793277459069864
2	101379280	101405372	2	neutral	AA	54.5678	somatic	0	0.135304345897702	0.262561854343845
2	104351396	104365628	2	neutral	AA	100	somatic	0	0.299589189410115	0.310129620427672
2	105596696	105634648	2	neutral	AA	76.2929	somatic	0	0.23653768731014	0.380990857784584
2	107280816	107330628	2	neutral	AA	84.1897	somatic	0	0.0825980416408966	0.0506940789456165
2	108103900	108236732	2	neutral	AA	100	somatic	0	0.450373960566299	0.872594215460802
2	112731672	112753020	2	neutral	AA	100	somatic	0	0.4878985828171	0.884418964835883
2	123434136	123443624	2	neutral	AA	100	somatic	0	0.873697202683653	0.901290672899373
2	125685164	125694652	0	loss	-	-1	germline	1	0.014308621153772	0.036636559471381
2	126781028	126797632	2	neutral	AA	22.4167	somatic	0	0.624786560679865	0.539694569205964
2	130948632	131000816	2	neutral	AA	59.5011	somatic	0	0.698036009519851	0.650398177257515
2	132243744	132246116	4	gain	AABB	17.2916	somatic	0	0.0832853776908234	0.270073155405309
2	132269836	132405040	2	neutral	AA	1.18065	somatic	0	0.560593570814262	0.185083204783882
2	137409960	137931800	2	neutral	AA	94.8332	somatic	0	0.00951958432680772	0.034403171190458
2	139983580	139995440	2	neutral	AA	61.8079	somatic	0	0.590821741258109	0.662159873465443
2	146105712	146119944	1	loss	A	-1	germline	1	0.000108864877355959	4.68560670484619e-05
2	147818296	147832528	2	neutral	AA	100	somatic	0	0.801387551740118	0.984919981701432
2	149575948	149594924	2	neutral	AA	100	somatic	0	0.712078198516418	0.454507148750322
2	150024256	150047976	2	neutral	AA	100	somatic	0	0.46531564332007	0.737515290210699
2	151876788	152045200	2	neutral	AA	28.7947	somatic	0	0.0177926082066016	0.0284596352031536
2	152593132	152607364	2	neutral	AA	36.4184	somatic	0	0.50278851269066	0.272577811238259
2	157735628	157792556	2	neutral	AA	61.8079	somatic	0	0.583177249761266	0.702043987986921
2	161277024	161279396	4	gain	AAAB	11.8417	germline	1	0.0832882754332214	0.270078187758273
2	167399156	167432364	2	neutral	AA	56.5725	somatic	0	0.164082988971367	0.426514388675965
2	171673500	171678244	2	neutral	AA	55.5044	somatic	0	0.594957182028339	0.94564296143737
2	172041160	172045904	1	loss	A	-1	germline	1	0.0143218846351329	0.0366591447786786
2	174470088	174500924	2	neutral	AA	100	somatic	0	0.719713581204392	0.741296664824222
2	177328348	177416112	2	neutral	AA	36.1142	somatic	0	0.802483629635846	0.554606682232892
2	179202228	179211716	1	loss	A	-1	germline	1	0.00113990679842723	0.00135293891802035
2	183929624	183939112	1	loss	A	-1	germline	1	0.00141875616763462	0.00153084765260858
2	186735700	186749932	2	neutral	AA	100	somatic	0	0.840652249983358	0.772977868029745
2	196313836	196325696	2	neutral	AA	58.1403	somatic	0	0.420312653861115	0.73132802812143
2	197163012	197186732	2	neutral	AA	100	somatic	0	0.763506434059343	0.985167893881091
2	198265992	198277852	2	neutral	AA	27.2891	somatic	0	0.618193880356729	0.784114512943805
2	199404552	199409296	2	neutral	AA	100	somatic	0	0.659312896448277	0.513740579021869
2	200234752	200317772	2	neutral	AA	36.5632	somatic	0	0.0519773976534745	0.233464269018178
2	200758964	200796916	2	neutral	AA	39.6288	somatic	0	0.297180778538017	0.45473413518827
2	204212596	205002472	2	neutral	AA	58.6514	somatic	0	0.000283358865789534	0.0023099255601885
2	205910948	205920436	2	neutral	AA	100	somatic	0	0.628362658257212	0.927172412550929
2	208202300	208207044	2	neutral	AA	100	somatic	0	0.522130082336723	0.495295242235239
2	212315348	212343812	2	neutral	AA	100	somatic	0	0.656528199215741	0.595242381899833
2	214616188	214639908	2	neutral	AA	100	somatic	0	0.468192566101022	0.716512946427649
2	215204444	215216304	2	neutral	AA	54.5678	somatic	0	0.707424960758885	0.885500395460634
2	217192180	217244364	2	neutral	AA	36.3786	somatic	0	0.161377678857419	0.239281220222456
2	218373436	218382924	2	neutral	AA	100	somatic	0	0.162279436719111	0.200552651016023
2	218764816	218807512	2	neutral	AA	36.3786	somatic	0	0.0440889716671441	0.132467729632832
2	219187032	219191776	0	loss	-	-1	germline	1	0.0143079811220355	0.0366371101876548
2	223909684	223945264	2	neutral	AA	60.2407	somatic	0	0.92910939224532	0.733298899168881
2	224920156	224939132	2	neutral	AA	100	somatic	0	0.269837839245266	0.210308984819454
2	224998432	225024524	2	neutral	AA	22.2737	somatic	0	0.99862825701192	0.931515741463202
2	227239972	227251832	2	neutral	AA	54.5678	somatic	0	0.681916126213198	0.919361897193214
2	227363316	227370432	2	neutral	AA	100	somatic	0	0.506238025706953	0.73567156595665
2	227496148	227657444	2	neutral	AA	32.915	somatic	0	0.942006525901654	0.328211396651572
2	232581716	232667108	2	neutral	AA	33.2777	somatic	0	0.133448618929474	0.275352235526403
2	235791032	235864564	2	neutral	AA	74.0962	somatic	0	0.139576571284863	0.185855508269815
2	238758404	238803472	2	neutral	AA	52.9042	somatic	0	0.892491646807013	0.686063627207848
2	239859012	239866128	3	gain	AAB	30.859	germline	1	0.00270438812152419	0.00496362793039073
2	241740008	241761356	2	neutral	AA	70.7668	somatic	0	0.741336267183316	0.863225205093012
3	3780968	3992076	2	neutral	AA	27.2864	somatic	0	0.112784574971007	0.152808981794962
3	6608392	6613136	1	loss	A	-1	somatic	0	0.0210292618281519	0.0559773888852966
3	12056876	12068736	2	neutral	AA	55.7268	somatic	0	0.137467282062715	0.219213393735196
3	12626156	12697316	2	neutral	AA	100	somatic	0	0.000737935275690373	0.00155700227952071
3	18314212	18387744	2	neutral	AA	54.5678	somatic	0	0.286598394687428	0.025141736930724
3	32059952	32067068	1	loss	A	-1	germline	1	0.00701627445965526	0.00939226178243435
3	38485700	38599556	2	neutral	AA	32.7111	somatic	0	0.167827167894648	0.439885397260622
3	50359932	50374164	1	loss	A	-1	somatic	0	0.000122038630367187	4.38134377145349e-05
3	68586380	68591124	1	loss	A	-1	somatic	0	0.021316366024353	0.0528666299611131
3	73619764	73669576	2	neutral	AA	100	somatic	0	0.463895720616136	0.649424515693658
3	80012304	80017048	1	loss	A	-1	germline	1	0.0205875559258632	0.056066951421235
3	89353240	89367472	1	loss	A	-1	germline	1	0.000333248574873012	0.000259052988120789
3	90290180	90465708	2	neutral	AA	1.66596	somatic	0	0.000425692876661358	0.022378832421763
3	90648352	90683932	3	gain	-	-1	germline	1	1.98228510038382e-11	1.88626891883814e-13
3	90683932	93793624	2	neutral	AA	43.248	somatic	0	1.87723342108747e-15	2.92965651738086e-12
3	94301232	94329696	2	neutral	AA	54.6331	somatic	0	0.23740080196661	0.299114980375727
3	96618676	96623420	1	loss	A	-1	somatic	0	0.0257738100173013	0.0526126896671536
3	104652640	104664500	1	loss	A	-1	germline	1	0.000315294620603588	0.000266957110213073
3	111441304	111540928	2	neutral	AA	100	somatic	0	0.000441184381550354	0.00570527292899681
3	132779816	132886556	2	neutral	AA	100	somatic	0	0.730584739013089	0.973318999499499
3	136302236	136306980	1	loss	A	-1	somatic	0	0.0168556613916877	0.0434991719798201
3	146667876	146672620	1	loss	A	-1	germline	1	0.0235291361345581	0.0514426068672403
3	148662728	148698308	2	neutral	AA	100	somatic	0	0.146451115985469	0.208637831414954
3	149881936	149905656	2	neutral	AA	54.578	somatic	0	0.193357116354177	0.185033734739222
3	163046536	163053652	1	loss	A	-1	germline	1	0.0309036794624168	0.0895878578550411
3	169711856	169754552	2	neutral	AA	100	somatic	0	0.330637907379427	0.324704784674846
3	183014032	183021148	2	neutral	AA	100	germline	1	0.851362529475294	0.970038848704124
3	185452448	185457192	1	loss	A	-1	germline	1	0.0245137466802947	0.0548769957077673
3	186745188	186771280	2	neutral	AA	11.0861	somatic	0	0.109065922473261	0.321781206214309
3	192587424	192594540	1	loss	A	-1	germline	1	0.00517919027791119	0.00945057958165529
3	193156704	193168564	1	loss	A	-1	germline	1	0.000369585808551313	0.000283152551912247
3	194262056	194266800	2	neutral	AA	36.3786	somatic	0	0.345579847195329	0.799050400438976
3	197383608	197390724	3	gain	AAB	2.21133	somatic	0	0.00270462166654831	0.00496441136286452
3	197725176	197777360	2	neutral	AA	23.9863	somatic	0	0.56741833264126	0.707686619594297
4	7863180	7865552	4	gain	-	-1	germline	1	0.0832842186167314	0.270071142483288
4	10209088	10232808	1	loss	A	-1	germline	1	2.96562685044518e-07	2.81735466067801e-08
4	10391732	10401220	1	loss	A	-1	germline	1	0.00120514291623522	0.00160640894649522
4	25190640	25195384	1	loss	A	-1	germline	1	0.0215801235832353	0.0471756574276406
4	40293164	40295536	5	gain	-	-1	germline	1	0.0832824800300934	0.270068123120791
4	49117004	49154956	82	gain	-	-1	germline	1	0.000532023199760033	0.00067094542717705
4	49653076	49657820	26	gain	-	-1	germline	1	0.0143063354421043	0.0366318786754805
4	70619184	70623928	1	loss	A	-1	germline	1	0.018878934394291	0.0505382218224324
4	87152024	87159140	1	loss	A	-1	somatic	0	0.00570345995285986	0.0102903659421894
4	97432272	97439388	1	loss	A	-1	germline	1	0.019787588977624	0.0534548590413919
4	106135140	106142256	1	loss	A	-1	germline	1	0.00427174499408489	0.00798809559043745
4	114254496	114261612	1	loss	A	-1	germline	1	0.00577956230876268	0.00910651145105379
4	129143540	129148284	1	loss	A	-1	germline	1	0.0164953548233098	0.0430679823318316
4	160956804	160963920	1	loss	A	-1	germline	1	0.00538616222809592	0.00933974623945533
4	165081712	165084084	0	loss	-	-1	germline	1	0.0832650957806563	0.270037930851009
4	172503700	172513188	0	loss	-	-1	germline	1	0.0143099012930118	0.0366428931458396
4	173480964	173485708	1	loss	A	-1	somatic	0	0.0209643084709873	0.0572555007068618
4	185518864	185523608	1	loss	A	-1	germline	1	0.0203730871615429	0.0553767436703155
4	186171164	186178280	1	loss	A	-1	germline	1	0.0176488316692444	0.0464563654773773
5	415100	417472	5	gain	-	-1	germline	1	0.0832824800300934	0.270068123120791
5	12811172	12820660	1	loss	A	-1	germline	1	0.00124221927673749	0.00136460213894118
5	14345856	14348228	4	gain	-	-1	germline	1	0.0832888549915013	0.270079194237079
5	26796484	26801228	1	loss	A	-1	somatic	0	0.019281555063332	0.0438625397389306
5	45371616	45376360	1	loss	A	-1	germline	1	0.0143533028078933	0.0367694917394789
5	58026236	58038096	1	loss	A	-1	germline	1	0.00037545396479122	0.000272908206621514
5	86419076	86421448	0	loss	-	-1	germline	1	0.0832761054639514	0.270057052335766
5	91203400	91208144	1	loss	A	-1	germline	1	0.0220001403522211	0.0605609411341317
5	118538328	118545444	1	loss	A	-1	germline	1	0.0181176265428911	0.0480578044184634
5	120042176	120049292	1	loss	A	-1	somatic	0	0.00910951492254668	0.0150916422231985
5	121088228	121133296	1	loss	A	-1	germline	1	1.07856367138814e-12	4.21884749357559e-15
5	135778024	135785140	1	loss	A	-1	germline	1	0.0177199915260208	0.0470779416422322
5	137516700	137521444	1	loss	A	-1	germline	1	0.0207004245901953	0.05642042725587
5	138401456	138408572	3	gain	-	-1	somatic	0	0.0027049887031059	0.0049658666096084
5	139791448	139796192	2	neutral	AA	100	somatic	0	0.657601807730572	0.96079353699801
5	141786300	141810020	2	neutral	AA	54.5678	germline	1	0.799387937686791	0.890811979880137
5	142633104	142635476	2	neutral	AA	100	somatic	0	0.519599658544408	0.734576241748442
5	143487024	143546324	2	neutral	AA	27.5373	somatic	0	0.159737306195389	0.346682124520547
5	145474760	145477132	2	neutral	AA	100	somatic	0	0.678782820891493	0.837410253131135
5	146359516	146373748	2	neutral	AA	26.3391	somatic	0	0.422716987519092	0.630964826980667
5	148209676	148228652	2	neutral	AA	36.8608	somatic	0	0.685326013144325	0.943379281316448
5	149134756	149144244	2	neutral	AA	100	somatic	0	0.962563507322	0.999833300053652
5	149286564	149291308	2	neutral	AA	100	somatic	0	0.0681689597542879	0.132642420229025
5	149931748	149960212	2	neutral	AA	13.642	germline	1	0.579375766725249	0.880109104343202
5	154277252	154336552	2	neutral	AA	100	somatic	0	0.428652722575527	0.606925491862473
5	157403548	157455732	2	neutral	AA	36.3786	germline	1	0.885397091515458	0.650341251587925
5	158928744	158931116	2	neutral	AA	100	somatic	0	0.100588785122796	0.298940006606583
5	159464816	159471932	1	loss	A	-1	somatic	0	0.0118360356223017	0.0315214235897753
5	160667420	160676908	2	neutral	AA	54.5789	somatic	0	0.134874061533524	0.205919616743339
5	162114340	162254288	2	neutral	AA	54.5693	germline	1	0.0808973411741179	0.0874632154287224
5	162301728	162318332	2	neutral	AA	54.6578	germline	1	0.391024453654054	0.464687104777996
5	163615816	163634792	2	neutral	AA	54.5792	somatic	0	0.45872287350657	0.627322699373709
5	164740144	164742516	2	neutral	AA	100	somatic	0	0.210634715352104	0.448251663197162
5	168034852	168072804	2	neutral	AA	54.5679	somatic	0	0.854478659773923	0.994250368025191
5	171834796	171837168	2	neutral	AA	100	somatic	0	0.573026290804807	0.772094353478317
5	172197712	172252268	2	neutral	AA	51.8346	somatic	0	0.3577452467013	0.472384987824494
5	172316312	172328172	2	neutral	AA	24.3354	germline	1	0.742681726412493	0.940544293011041
5	176977292	176984408	2	neutral	AA	54.5678	somatic	0	0.125641747595967	0.114285423497628
5	178251056	178307984	2	neutral	AA	16.4594	somatic	0	0.586010893133879	0.650661626994835
5	178585508	178587880	5	gain	AAABB	68.0352	germline	1	0.0832807414728555	0.270065103782933
5	178680388	178687504	0	loss	-	-1	germline	1	0.00381315529721254	0.00924606645211112
5	179380128	179396732	2	neutral	AA	12.8608	somatic	0	0.0674471966484405	0.109193617684602
6	296500	381892	4	gain	AABB	2.17734	germline	1	5.59955189785763e-24	0
6	569280	640440	2	neutral	AA	100	somatic	0	0.22755841280477	0.637603841642497
6	5095056	5144868	2	neutral	AA	12.1268	somatic	0	0.994016113243171	0.936783153573634
6	7009260	7078048	2	neutral	AA	100	somatic	0	0.0123855515139321	0.00842540982625706
6	10721440	10892224	2	neutral	AA	27.2839	somatic	0	0.0936932700770399	0.163245246593825
6	32489284	32655324	1	loss	A	-1	germline	1	8.15910478030201e-17	0
6	32660068	32662440	1	loss	A	-1	germline	1	0.12453987570748	0.335662168295166
6	35428192	35437680	2	neutral	AA	100	somatic	0	0.922665764634567	0.974645329693303
6	35783992	35798224	3	gain	AAB	3.31919	germline	1	0.000549614706760426	0.000481882939111
6	47487440	47693804	2	neutral	AA	70.7146	somatic	0	0.948754165985178	0.601201487061267
6	50096640	50101384	2	neutral	AA	100	somatic	0	0.808589965689985	0.993221277049935
6	50829588	50867540	2	neutral	AA	100	somatic	0	0.774994546281012	0.722971831577145
6	56522388	57058460	2	neutral	AA	33.5089	somatic	0	0.142350896699505	0.0361918873563879
6	60236940	60241684	4	gain	-	-1	somatic	0	0.014314016710575	0.0366448209760389
6	65358088	65372320	2	neutral	AA	100	somatic	0	0.973050169512169	0.629650195402239
6	72151496	72165728	1	loss	A	-1	somatic	0	0.00202987522083217	0.0019607995158395
6	78812072	78819188	1	loss	A	-1	germline	1	0.00524566247746824	0.00949698466270532
6	85240192	85254424	2	neutral	AA	100	somatic	0	0.0927576297139338	0.302015706907985
6	103288740	103291112	1	loss	A	-1	germline	1	0.0833085619168413	0.270113416145493
6	112971244	112975988	2	neutral	AA	100	somatic	0	0.8550935712853	0.90435113199681
6	134267060	134274176	1	loss	A	-1	somatic	0	0.00555158801693508	0.00957023713183924
6	135830208	135858672	2	neutral	AA	27.4143	somatic	0	0.233420051778583	0.350245739041991
6	148876208	148878580	1	loss	A	-1	somatic	0	0.0833624854497483	0.270207039298984
6	150705020	150731112	2	neutral	AA	36.3791	somatic	0	0.383292578972525	0.374358494945459
6	154298600	154300972	1	loss	A	-1	somatic	0	0.0834083136663795	0.270286587246463
6	157308668	157311040	9	gain	AAAAAABBB	4.83722	germline	1	0.0832685723953602	0.270043969107853
6	157313412	157315784	5	gain	AAABB	4.16194	germline	1	0.0832824800300934	0.270068123120791
6	158077196	158127008	2	neutral	AA	54.5775	somatic	0	0.861527424904564	0.579515605177567
6	162500976	163241040	2	neutral	AA	16.5948	somatic	0	0.241860379678815	0.0343552029119856
6	164775724	164780468	1	loss	A	-1	somatic	0	0.0195312780570402	0.0457522819047816
6	165316540	165318912	0	loss	-	-1	germline	1	0.0832650957806563	0.270037930851009
6	166189436	166203668	2	neutral	AA	100	somatic	0	0.459983590512484	0.745891282329261
7	9760780	9765524	1	loss	A	-1	germline	1	0.0166255470699904	0.0436924057000393
7	57487792	57497280	3	gain	AAB	6.46352	germline	1	0.000533470135470645	0.000673026130898813
7	57819872	58023864	2	neutral	AA	0.4097	somatic	0	1.32334434444592e-07	7.44231103676496e-05
7	61045792	61057652	3	gain	-	-1	germline	1	0.000107755513357827	9.09885768479723e-05
7	61057652	62300580	2	neutral	AA	1.55606	germline	1	2.45986221450774e-07	0.000180832904125294
7	62300580	62357508	3	gain	AAB	0.546027	somatic	0	3.18317468672088e-10	3.05774516817792e-10
7	62402576	62407320	4	gain	-	-1	germline	1	0.014312278962496	0.0366409654043819
7	62438156	62537780	2	neutral	AA	5.22192	somatic	0	7.77327205575843e-07	9.12040310759865e-05
7	62540152	62542524	1	loss	A	11.1174	germline	1	0.125903443001379	0.337660705232957
7	62542524	62544896	0	loss	-	-1	germline	1	0.0832801619603094	0.270064097342447
7	65225256	65230000	1	loss	A	-1	germline	1	0.0147246772972828	0.037859558864163
7	65796908	65823000	3	gain	AAB	0.146214	germline	1	9.28790444891386e-09	5.6374671597581e-10
7	90181068	90183440	0	loss	-	-1	germline	1	0.0832650957806563	0.270037930851009
7	100221744	100949948	1	loss	A	-1	somatic	0	8.63421780478269e-134	0
7	100957064	100959436	9	gain	AAAAAABBB	100	germline	1	0.0832685723953602	0.270043969107853
7	100976040	102335196	1	loss	A	-1	somatic	0	2.74051153863655e-292	0
7	109811740	109814112	0	loss	-	-1	germline	1	0.0832697312930589	0.270045981882024
7	112795716	112798088	0	loss	-	-1	germline	1	0.0832726285944678	0.270051013865386
7	115649232	115680068	2	neutral	AA	54.5684	somatic	0	0.240176485509627	0.220778114121168
7	134101020	134112880	1	loss	A	-1	germline	1	0.000183894268095138	0.000245281403915332
7	143847568	143849940	4	gain	AAAB	76.3314	germline	1	0.0832842186167314	0.270071142483288
7	152401000	152408116	12	gain	AAAAAAAABBBB	4.70487	germline	1	0.0027000208910987	0.00495792348501012
7	158150728	158153100	4	gain	AABB	30.5855	germline	1	0.0832888549915013	0.270079194237079
8	642812	649928	1	loss	A	-1	germline	1	0.00682638240279187	0.0120754982813445
8	4264856	4267228	0	loss	-	-1	germline	1	0.0832732080645488	0.270052020270271
8	14433620	14440736	1	loss	A	-1	germline	1	0.00447916169152027	0.00924389573432616
8	15543716	15555576	1	loss	A	-1	germline	1	0.000225987595246789	0.000264508733087698
8	25114736	25133712	1	loss	A	-1	germline	1	3.13398832937838e-06	1.25718568255717e-06
8	38072972	38077716	1	loss	A	-1	germline	1	0.0216246646886022	0.05907492518493
8	40917000	40921744	1	loss	A	-1	germline	1	0.0235256036257597	0.0506264329029809
8	42520472	42522844	0	loss	-	-1	germline	1	0.0832650957806563	0.270037930851009
8	43236816	43239188	8	gain	-	-1	germline	1	0.0832691518425763	0.270044975493574
8	43239188	43241560	11	gain	-	-1	germline	1	0.0832668340733098	0.270040949967116
8	43241560	43243932	4	gain	-	-1	germline	1	0.0832888549915013	0.270079194237079
8	48028256	48035372	2	neutral	AA	100	germline	1	0.0599575565098884	0.144968225946074
8	50260308	50293516	2	neutral	AA	41.4024	somatic	0	0.56016408051371	0.859944236352543
8	53481484	53505204	2	neutral	AA	100	somatic	0	0.0804984035938905	0.263910767632686
8	54143272	54157504	2	neutral	AA	100	somatic	0	0.767419757041818	0.785245081116265
8	65253720	65267952	2	neutral	AA	100	somatic	0	0.624732886668039	0.540864466835639
8	69962140	69978744	2	neutral	AA	100	somatic	0	0.277039408047356	0.581739021935148
8	74449964	74454708	1	loss	A	-1	germline	1	0.0234323709077129	0.0539426711552853
8	75576664	75612244	2	neutral	AA	100	somatic	0	0.49885912486697	0.198133600641232
8	87678608	87723676	2	neutral	AA	26.246	somatic	0	0.108667240592578	0.192358472225962
8	89751736	89867964	2	neutral	AA	23.3256	somatic	0	0.533346602274914	0.376278289042124
8	92007508	92154572	2	neutral	AA	46.7083	somatic	0	0.230185323012	0.436057762865181
8	93058304	93065420	1	loss	A	-1	germline	1	0.00650144907015909	0.0100418578631561
8	95404212	95442164	2	neutral	AA	100	somatic	0	0.203685201049037	0.527937584045966
8	100655820	100757816	2	neutral	AA	13.0462	somatic	0	0.18213795943686	0.0306092895713035
8	106144628	106154116	2	neutral	AA	84.224	somatic	0	0.521868431483712	0.643325493991666
8	108414632	108547464	2	neutral	AA	100	somatic	0	0.00495327425403373	0.00196983907486703
8	111500604	111517208	2	neutral	AA	54.5678	somatic	0	0.721700774396711	0.753026518104281
8	112705580	112755392	2	neutral	AA	36.3861	somatic	0	0.652324246849478	0.645178672946578
8	113028172	113035288	1	loss	A	-1	germline	1	0.00660571815904897	0.00960920079249827
8	114622156	114629272	1	loss	A	-1	germline	1	0.00552743208540595	0.00939907037257637
8	119140816	119150304	1	loss	A	-1	germline	1	0.00160215014277482	0.00181232836060707
8	123389068	123462600	2	neutral	AA	44.6066	somatic	0	0.195483463119937	0.502419464407124
8	124717388	124722132	2	neutral	AA	100	somatic	0	0.693800456775977	0.648585020943703
8	139959860	139964604	1	loss	A	-1	germline	1	0.0206291096960576	0.0561929450669855
8	143619856	143631716	1	loss	A	-1	germline	1	0.000963494839549914	0.00144782775872221
8	144120348	144125092	2	neutral	AA	100	somatic	0	0.177418374983821	0.43581023660348
8	144125092	144127464	6	gain	AAAAAB	14.763	germline	1	0.0832743670145104	0.270054033088265
8	144945804	144981384	2	neutral	AA	14.452	somatic	0	0.927831784486547	0.965533861679929
9	6411516	6596532	2	neutral	AA	18.1899	somatic	0	0.0116709823050134	0.0356176353130413
9	6700900	6712760	1	loss	A	-1	germline	1	0.000265375567776348	0.000277010337996653
9	11750888	11838652	2	neutral	AA	54.5678	somatic	0	0.268030863715936	0.479370290651873
9	16765296	16815108	2	neutral	AA	100	somatic	0	0.918862708099107	0.803878541436086
9	17761536	17778140	2	neutral	AA	100	somatic	0	0.127349529459548	0.292532989973524
9	22496048	22503164	1	loss	A	-1	germline	1	0.00657320929187078	0.00888932705122281
9	33784396	33812860	2	neutral	AA	1.19525	somatic	0	0.0198626812853184	0.0868538545812833
9	40912256	40914628	6	gain	-	-1	germline	1	0.0832726285944678	0.270051013865395
9	40921744	40924116	5	gain	AAABB	4.72801	germline	1	0.0832813209886682	0.270066110226148
9	40924116	40928860	6	gain	AAAABB	1.23239	germline	1	0.0143083468513639	0.0366349073660193
9	42387640	42390012	6	gain	AAABBB	100	somatic	0	0.0832778439427912	0.270060071607926
9	89953356	89979448	2	neutral	AA	36.5641	somatic	0	0.284715313816997	0.222660428602105
9	91632732	91639848	1	loss	A	-1	germline	1	0.00516432055896923	0.00909036809224362
9	92389400	92446328	2	neutral	AA	54.5785	somatic	0	0.521256076715475	0.480685834792316
9	103011216	103015960	1	loss	A	-1	germline	1	0.0208597286400769	0.0569120547658402
9	110262420	110267164	1	loss	A	-1	germline	1	0.022526183559525	0.0516682753032874
9	112167136	112200344	2	neutral	AA	36.7073	somatic	0	0.935550885103568	0.560428270689826
9	127419096	127423840	1	loss	A	-1	germline	1	0.0234760557748689	0.0508127678774096
9	129409204	129444784	2	neutral	AA	0.176523	germline	1	0.000351666052904951	0.00238624355680361
9	133107152	133512764	2	neutral	AA	6.71812	somatic	0	0.764464931079761	0.377280401645751
9	134449704	134525608	2	neutral	AA	6.13825	somatic	0	0.481063035695076	0.667733007888644
9	137326940	137329312	5	gain	AAABB	5.35933	germline	1	0.0832801619603094	0.270064097342456
10	26936432	26941176	3	gain	-	-1	germline	1	0.0143183161502258	0.0366547369331364
10	38485700	38495188	3	gain	-	-1	germline	1	0.000533157235630909	0.000672389157948095
10	38526024	38528396	15	gain	-	-1	germline	1	0.083266254639159	0.270039943592345
10	38573464	38578208	3	gain	-	-1	germline	1	0.0146542136027084	0.03766672611303
10	38578208	38580580	5	gain	-	-1	germline	1	0.0832824800300934	0.270068123120791
10	38580580	38582952	3	gain	-	-1	germline	1	0.0832958099456737	0.270091272196304
10	39256600	39268460	1	loss	A	-1	germline	1	0.000325187579667858	0.000267758972346321
10	39341992	39360968	1	loss	A	-1	germline	1	6.65613217551757e-05	4.9995513126011e-05
10	41856312	41882404	19	gain	AAAAAAAAAAAAABBBBBB	4.4236	germline	1	0.000107522094766504	9.08075375724016e-05
10	41882404	41884776	92	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBB	100	germline	1	0.0832650957806563	0.270037930851018
10	46514920	46559988	4	gain	AABB	0.531661	germline	1	9.2754037346244e-13	3.44169137633799e-15
10	58661932	58735464	2	neutral	AA	54.5678	somatic	0	0.516219349295352	0.635706791571057
10	60217964	60246428	2	neutral	AA	54.5678	somatic	0	0.42209319689254	0.223267889558451
10	62369368	62371740	1	loss	A	-1	somatic	0	0.0833369697179498	0.270162741522171
10	65547848	65554964	1	loss	A	-1	germline	1	0.00616580176803751	0.00880145607086835
10	67725344	67730088	1	loss	A	-1	somatic	0	0.0209154053075948	0.0570987274053678
10	74803392	74834228	2	neutral	AA	74.5359	somatic	0	1.10892577202503e-05	3.08338545299547e-05
10	76494628	76501744	1	loss	A	-1	germline	1	0.014554782872175	0.0373765646776557
10	82721128	82751964	2	neutral	AA	100	somatic	0	0.574469352023073	0.772744203289624
10	83437472	83520492	2	neutral	AA	100	somatic	0	0.746992379390467	0.976904896679713
10	116688168	116728492	2	neutral	AA	54.5687	somatic	0	0.223657209368404	0.403979821984518
10	119608100	119641308	2	neutral	AA	36.5676	germline	1	0.833734975965457	0.950967507399445
10	128884992	128949036	2	neutral	AA	7.80082	germline	1	0.567907408843902	0.903159356940865
10	131743252	131766972	2	neutral	AA	14.5914	somatic	0	0.456219820154557	0.252746506160926
11	3705064	3783340	2	neutral	AA	36.3786	somatic	0	0.429324436535062	0.36919094883567
11	4947992	4952736	1	loss	A	-1	germline	1	0.0213075492110546	0.0551721335650132
11	5664336	5680940	2	neutral	AA	100	somatic	0	0.891848738280895	0.96956359065261
11	7559564	7576168	2	neutral	AA	100	somatic	0	0.0411317337897924	0.0392011472058867
11	9663528	9703852	2	neutral	AA	38.9415	somatic	0	0.133056572047709	0.11601580219142
11	20866484	20918668	2	neutral	AA	100	somatic	0	0.939419043825394	0.434431768709424
11	25026972	25155060	2	neutral	AA	38.8907	somatic	0	0.431295462023757	0.710131123040918
11	26533192	26556912	2	neutral	AA	100	somatic	0	0.804795262696032	0.916500829996727
11	28985840	28990584	1	loss	A	-1	germline	1	0.0216532418973057	0.0504214194603632
11	34417720	34436696	2	neutral	AA	100	somatic	0	0.675198222339162	0.309155917925625
11	37347140	37349512	1	loss	A	-1	somatic	0	0.0958946546046794	0.291325423691291
11	39047864	39166464	2	neutral	AA	100	somatic	0	0.695607882015297	0.517937728158346
11	50174916	50179660	1	loss	A	-1	germline	1	0.0231804572412752	0.0583175513443082
11	50680152	50810612	2	neutral	AA	1.01797	somatic	0	0.000231789517374968	0.000169855847722888
11	55115792	55125280	1	loss	A	-1	germline	1	0.0256892144715259	0.0597262369364482
11	55229648	55343504	2	neutral	AA	4.11242	germline	1	0.0256975586328513	0.157576584150829
11	58246832	58348828	2	neutral	AA	32.2194	germline	1	0.350035674543342	0.161128415618586
11	60972260	60984120	2	neutral	AA	100	somatic	0	0.606931925901212	0.837615699677951
11	66942584	66947328	1	loss	A	-1	germline	1	0.0215369708339221	0.0567226880664442
11	67369544	67393264	2	neutral	AA	36.3786	somatic	0	0.0026500967502528	0.00141454977935718
11	72580828	72585572	2	neutral	AA	54.5678	somatic	0	0.929993715003971	0.886612966821143
11	74459452	74532984	2	neutral	AA	13.5204	somatic	0	0.229913819161854	0.415744011993053
11	74532984	74542472	2	neutral	AA	100	somatic	0	0.0660648050220882	0.177672963839072
11	76871776	76878892	2	neutral	AA	100	somatic	0	0.791594209581712	0.886497120682184
11	76990376	77033072	2	neutral	AA	72.6311	somatic	0	0.473512934534227	0.121989267409942
11	83793272	83802760	2	neutral	AA	100	somatic	0	0.519465183112483	0.656218026463803
11	86217456	86234060	2	neutral	AA	100	somatic	0	0.365986641007155	0.503548465895364
11	99550468	99559956	2	neutral	AA	100	somatic	0	0.342385193683822	0.545748232788694
11	100418620	100504012	2	neutral	AA	100	somatic	0	0.167348728467021	0.304073451061227
11	100748328	100753072	2	neutral	AA	54.5678	somatic	0	0.920767893292274	0.998260469188134
11	103699096	103720444	2	neutral	AA	100	somatic	0	0.49372702801222	0.515884458463466
11	107318768	107323512	2	neutral	AA	100	somatic	0	0.87323825675768	0.71360561344125
11	118116112	118120856	2	neutral	AA	100	somatic	0	0.21737005652013	0.236250444449223
11	120753776	120796472	2	neutral	AA	100	somatic	0	0.413280475855141	0.608025924213143
11	131264108	131266480	1	loss	A	-1	germline	1	0.0833584257055556	0.270199991570831
11	134430728	134435472	2	neutral	AA	100	somatic	0	0.375628728351375	0.588693441602226
12	2189356	2210704	2	neutral	AA	100	germline	1	0.0591416398372563	0.0216119177873644
12	2255772	2258144	6	gain	AAAABB	17.2279	germline	1	0.0832743670145104	0.270054033088265
12	6131620	6138736	1	loss	A	-1	germline	1	0.00413352545656641	0.00948152705248773
12	7796764	7834716	2	neutral	AA	21.8505	somatic	0	0.00157198017076336	0.00316055292492623
12	8970904	8992252	2	neutral	AA	36.2524	somatic	0	0.450115470523945	0.548079173233264
12	12379468	12388956	1	loss	A	-1	germline	1	0.0013459082325319	0.0015194241287817
12	18845540	19628300	2	neutral	AA	31.0049	somatic	0	0.0939523874351856	0.00760464316863707
12	25790756	25802616	2	neutral	AA	54.5728	somatic	0	0.690277329179093	0.63914177745262
12	30084076	30091192	1	loss	A	-1	germline	1	0.00542211207785211	0.00902383365121662
12	33234092	33241208	1	loss	A	-1	germline	1	0.0062932121062146	0.00891067927453593
12	39709652	39714396	1	loss	A	-1	germline	1	0.0208125622374942	0.0567713880847168
12	45509192	45516308	0	loss	-	-1	germline	1	0.0143064268643865	0.0366324293301895
12	50227100	50407372	2	neutral	AA	9.92671	somatic	0	1.89274992448634e-06	2.96883445917162e-05
12	56712148	56724008	2	neutral	AA	7.92949	somatic	0	0.274331915434433	0.524528148966274
12	59541944	59553804	1	loss	A	-1	germline	1	0.000300162768051552	0.000265383738763059
12	61747904	61835668	2	neutral	AA	100	somatic	0	0.0715096718363834	0.1639068027088
12	61875992	61885480	1	loss	A	-1	germline	1	0.0013677896876734	0.00158662547695032
12	71990200	72018664	2	neutral	AA	56.6889	somatic	0	0.6052257900129	0.728343675920356
12	77739928	77801600	2	neutral	AA	54.5678	somatic	0	0.896187229887274	0.887892307638368
12	79760872	79767988	3	gain	-	-1	germline	1	0.00270482186266524	0.00496390771469224
12	80187832	80256620	2	neutral	AA	36.3786	somatic	0	0.135846384660484	0.221846761984023
12	81743864	81750980	1	loss	A	-1	germline	1	0.00591181686657684	0.00969363503879128
12	82638108	82640480	1	loss	A	-1	germline	1	0.0834384902097347	0.270338957246811
12	84198884	84201256	0	loss	-	-1	germline	1	0.0832685723953602	0.270043969107843
12	90090932	90098048	1	loss	A	-1	germline	1	0.00443737351614438	0.0079276480460484
12	95615320	95620064	1	loss	A	-1	germline	1	0.0216634325213302	0.0563659835399601
12	99398660	99408148	1	loss	A	-1	germline	1	0.00168375569088145	0.00168659448272479
12	118706740	118737576	2	neutral	AA	4.13578	somatic	0	0.451332394821834	0.614441104166664
12	124539488	124541860	1	loss	A	-1	somatic	0	0.0832958099456737	0.270091272196294
12	128083256	128085628	1	loss	A	-1	somatic	0	0.0832813209886682	0.270066110226138
12	131648372	131653116	1	loss	A	-1	germline	1	0.0243044079359441	0.0514648023625404
13	20249764	20254508	1	loss	A	-1	germline	1	0.0253373291243829	0.0564356475485651
13	21376464	21378836	4	gain	-	-1	germline	1	0.0832842186167314	0.270071142483288
13	22019276	22024020	0	loss	-	-1	germline	1	0.0143096269689557	0.0366387623799345
13	45423800	45426172	1	loss	A	-1	germline	1	0.0832882754332214	0.270078187758263
13	48958080	48962824	1	loss	A	-1	germline	1	0.0260384529446843	0.0567484422789337
13	61961384	61963756	1	loss	A	-1	germline	1	0.0855557413680919	0.273993772203041
13	63028784	63064364	3	gain	-	-1	germline	1	6.68414770260725e-10	1.24405630241853e-09
13	63064364	63066736	5	gain	-	-1	germline	1	0.0832824800300934	0.270068123120791
13	63066736	63069108	3	gain	-	-1	germline	1	0.0833050839497021	0.270107376755213
13	69826936	69831680	1	loss	A	-1	germline	1	0.0277785226393995	0.056325180398261
13	71902436	71907180	1	loss	A	-1	germline	1	0.0143195970545578	0.0366591447786786
13	72234516	72239260	1	loss	A	-1	germline	1	0.021026250268358	0.0562320684689311
13	87265880	87270624	2	neutral	AA	62.2235	somatic	0	0.333715849177818	0.807601551035037
13	88084220	88086592	2	neutral	AA	100	somatic	0	0.144152184429762	0.363602870463096
13	88292956	88295328	2	neutral	AA	100	somatic	0	0.617337187742044	0.80095429729712
13	88665360	88741264	2	neutral	AA	58.0998	somatic	0	0.189380777808009	0.333550798044478
13	89014044	89153992	2	neutral	AA	100	somatic	0	0.839158338876948	0.43033839696235
13	89251244	89524024	2	neutral	AA	17.9453	somatic	0	0.850358999475191	0.519253209706128
13	89865592	89867964	2	neutral	AA	68.8735	somatic	0	0.81521063955701	0.904261761206278
13	91160704	91163076	2	neutral	AA	100	somatic	0	0.214084219410533	0.452275553456566
13	92294520	92296892	2	neutral	AA	100	somatic	0	0.146160041740141	0.366368153392336
13	93010864	93013236	2	neutral	AA	100	somatic	0	0.366967789513164	0.609678492671835
13	93670280	93672652	2	neutral	AA	100	somatic	0	0.767238253931376	0.883003056354722
13	94185004	94187376	2	neutral	AA	100	somatic	0	0.628113898656043	0.80759941074174
13	94989112	94996228	2	neutral	AA	100	somatic	0	0.0163472122590509	0.0432051459431019
13	95676992	95679364	2	neutral	AA	100	somatic	0	0.62828941930365	0.80777124948153
13	95873868	95978236	2	neutral	AA	100	somatic	0	0.0820933126440059	0.00309077061263852
13	96571236	96578352	2	neutral	AA	100	somatic	0	0.65479076303975	0.771872374574412
13	96919920	96922292	2	neutral	AA	54.5678	somatic	0	0.447154158756871	0.6787174422384
13	97138144	97140516	2	neutral	AA	100	somatic	0	0.892646081900083	0.933480966670281
13	97581708	97584080	2	neutral	AA	100	somatic	0	0.289763500780072	0.535115978569149
13	98048992	98051364	2	neutral	AA	100	somatic	0	0.429723770223334	0.664341794429424
13	98402420	98419024	2	neutral	AA	54.8448	somatic	0	0.834812527632156	0.935020888015866
13	99875432	99877804	2	neutral	AA	100	somatic	0	0.144863214079948	0.364581322538633
13	100326112	100328484	2	neutral	AA	100	somatic	0	0.385689645823814	0.626486386967166
13	100378296	100380668	2	neutral	AA	100	somatic	0	0.261040210902158	0.50494065853654
13	100731724	100750700	2	neutral	AA	55.0562	somatic	0	0.881768629683283	0.945514486121755
13	101357932	101360304	2	neutral	AA	21.8271	somatic	0	0.294552546225984	0.539969286262542
13	101419604	101421976	2	neutral	AA	100	somatic	0	0.862986790412275	0.923022653118987
13	102226084	102235572	2	neutral	AA	54.5922	somatic	0	0.155817747405254	0.413563946269959
13	104237540	104247028	2	neutral	AA	6.75859	somatic	0	0.242713941880699	0.399678273420889
13	104785472	104799704	2	neutral	AA	54.5876	somatic	0	0.269519988840486	0.428054984128275
13	105278848	105285964	2	neutral	AA	100	somatic	0	0.596811521864491	0.391371896867023
13	105940636	105943008	2	neutral	AA	100	somatic	0	0.247173569127852	0.48989122742526
13	106943992	106946364	2	neutral	AA	100	somatic	0	0.25664135801389	0.500181574122866
13	107216772	107219144	2	neutral	AA	77.7525	somatic	0	0.316113752555802	0.561555257941687
13	107375696	107378068	2	neutral	AA	100	somatic	0	0.0901123798784565	0.281737557907335
13	107494296	107529876	2	neutral	AA	100	somatic	0	0.543735310871204	0.920653522875061
13	108170316	108172688	2	neutral	AA	100	somatic	0	0.855670606709652	0.920295681651884
13	108578300	108580672	2	neutral	AA	100	somatic	0	0.123010667472731	0.333431063723172
13	108642344	108668436	2	neutral	AA	36.5261	somatic	0	0.982927322358546	0.997646083772034
13	109021864	109024236	0	loss	-	-1	germline	1	0.0832726285944678	0.270051013865386
13	109216368	109218740	0	loss	-	-1	germline	1	0.08327958245103	0.270063090904707
13	109496264	109498636	2	neutral	AA	100	somatic	0	0.576953983912561	0.774739107966685
13	111543300	111548044	2	neutral	AA	15.7956	somatic	0	0.978650195427894	0.996836516396779
13	111899100	111901472	2	neutral	AA	100	somatic	0	0.651634771621839	0.821755718539172
13	112776740	112781484	2	neutral	AA	27.2877	somatic	0	0.215370219553283	0.406968271698915
13	113108820	113118308	2	neutral	AA	77.0887	somatic	0	0.101734280919417	0.341982892556668
13	113175236	113177608	2	neutral	AA	36.5365	somatic	0	0.0894568664686051	0.280632827118142
13	113215560	113217932	2	neutral	AA	100	somatic	0	0.486123925590052	0.709518832032612
13	113260628	113265372	3	gain	AAA	100	somatic	0	0.0144914154268561	0.0371616219278111
13	113448016	113450388	2	neutral	AA	100	somatic	0	0.126016186747323	0.337829081167175
13	113504944	113533408	2	neutral	AA	44.0933	somatic	0	0.82669774525306	0.911276546559621
13	113599824	113618800	2	neutral	AA	36.3803	somatic	0	0.986005174358415	0.809971747670619
13	114154872	114157244	1	loss	A	-1	germline	1	0.0838945322198947	0.271129433185151
14	16091648	16094020	11	gain	-	-1	germline	1	0.0832668340733098	0.270040949967116
14	16094020	16096392	5	gain	-	-1	germline	1	0.0832824800300934	0.270068123120791
14	18660524	18693732	3	gain	AAB	6.93637	germline	1	0.000550398805503036	0.000727084772165654
14	20083724	20086096	1	loss	A	-1	somatic	0	0.0849545042955049	0.272959801923218
14	24443460	24502760	2	neutral	AA	15.5911	somatic	0	0.057010294206396	0.0539342736730795
14	30722144	30757724	2	neutral	AA	100	germline	1	0.883703299740139	0.747074926798757
14	34348932	34351304	1	loss	A	-1	germline	1	0.0833682853621205	0.270217107714793
14	34958536	34963280	1	loss	A	-1	germline	1	0.021104287393537	0.0559710246821262
14	37299700	37302072	0	loss	-	-1	germline	1	0.0832732080645488	0.270052020270271
14	40138984	40148472	1	loss	A	-1	germline	1	0.00559193597313074	0.00952796843758674
14	44873496	44918564	2	neutral	AA	36.3845	somatic	0	0.143415715347786	0.504927060003514
14	47238380	47247868	1	loss	A	-1	germline	1	0.00103246887091282	0.00150593220555439
14	59748308	59750680	1	loss	A	-1	germline	1	0.0833775659017642	0.270233217749598
14	59874024	59876396	0	loss	-	-1	germline	1	0.083277264446578	0.270059065181129
14	63394072	63396444	1	loss	A	-1	somatic	0	0.0963851660124146	0.292125559698173
14	64537376	64568212	2	neutral	AA	54.5678	somatic	0	0.339789525220494	0.531162239089047
14	69549412	69556528	1	loss	A	-1	germline	1	0.00586839808623512	0.00943720082512889
14	73059972	73064716	1	loss	A	-1	somatic	0	0.017618505451019	0.0430762270614556
14	79647016	79649388	1	loss	A	-1	germline	1	0.0833033450102391	0.27010435709702
14	89566720	89609416	2	neutral	AA	30.8926	somatic	0	0.780907417351527	0.796892576880585
14	99927616	99929988	4	gain	AAAB	73.7432	somatic	0	0.083289434553048	0.270080200718623
14	101723220	101725592	1	loss	A	-1	germline	1	0.0834910300876742	0.270430622563786
14	105328660	105366612	2	neutral	AA	75.3103	somatic	0	0.0961376123057539	0.0972358656248619
15	0	17080772	9	gain	AAAAAABBB	-1	germline	1	NA	NA
15	17080772	17083144	16	gain	-	-1	germline	1	0.083266254639159	0.270039943592345
15	17083144	20339900	9	gain	AAAAAABBB	-1	germline	1	0.837302957856835	0.881136400493727
15	20339900	20342272	28	gain	AAAAAAAAAAAAAAAAABBBBBBBBBBB	80.9904	germline	1	0.083266254639159	0.270039943592345
15	20342272	20669608	9	gain	AAAAAABBB	0.702358	germline	1	4.5156564766661e-16	0
15	22780688	22799664	2	neutral	AA	63.5406	somatic	0	0.0021743495589823	0.00403475958736199
15	23425872	23428244	0	loss	-	-1	germline	1	0.0832668340733098	0.270040949967106
15	24870420	24875164	1	loss	A	-1	germline	1	0.0230231594920424	0.0556528153054819
15	34436696	34472276	2	neutral	AA	100	somatic	0	0.555598901151362	0.568178216502187
15	38981448	39017028	2	neutral	AA	93.3662	somatic	0	0.0601883339256474	0.0244249766579723
15	49816744	49880788	2	neutral	AA	100	somatic	0	0.340529855817483	0.483166213158946
15	59553804	59563292	1	loss	A	-1	germline	1	0.000946075738829192	0.00156093270471835
15	64134136	64145996	2	neutral	AA	100	somatic	0	0.927682649944441	0.997141152181068
15	71416176	71420920	1	loss	A	-1	germline	1	0.0214783540617609	0.0523669376618241
15	72092196	72096940	1	loss	A	-1	germline	1	0.0189798315669966	0.0498319034322958
15	72177588	72198936	2	neutral	AA	54.6927	somatic	0	0.428422423675401	0.684561740867721
15	76591880	76594252	0	loss	-	-1	germline	1	0.0832668340733098	0.270040949967106
15	77037816	77040188	0	loss	-	-1	germline	1	0.0832656752082745	0.270038937220303
15	79431164	79516556	2	neutral	AA	40.4568	somatic	0	0.403597157204202	0.492732003267315
15	97273348	97289952	1	loss	A	-1	germline	1	1.49254073105383e-05	6.45951130973099e-06
15	97982576	98008668	2	neutral	AA	100	somatic	0	0.18546538339988	0.503888779294495
15	99031000	99033372	1	loss	A	-1	somatic	0	0.0873861372587999	0.277123003184676
16	1024704	1027076	4	gain	AABB	100	germline	1	0.0832888549915013	0.270079194237079
16	1183628	1188372	3	gain	AAB	9.64263	somatic	0	0.0144879946019921	0.0370588672837445
16	3197456	3202200	2	neutral	AA	18.2077	somatic	0	0.0859417596697546	0.242228963032617
16	3361124	3394332	2	neutral	AA	36.5688	somatic	0	0.951118548561252	0.938214952311154
16	9492744	9506976	2	neutral	AA	100	somatic	0	0.727735907412043	0.782505767039092
16	11589592	11591964	1	loss	A	-1	somatic	0	0.0832830595557061	0.270069129572209
16	21523528	21582828	4	gain	AABB	12.1663	germline	1	9.24090380694467e-09	5.59244428544048e-10
16	22033508	22042996	2	neutral	AA	100	somatic	0	0.83175216504268	0.981203219116459
16	22344240	22351356	2	neutral	AA	100	somatic	0	0.329609044264364	0.514741269838683
16	22614648	22685808	4	gain	AAAB	2.75495	germline	1	1.09342035077859e-20	0
16	22685808	22700040	4	gain	AABB	7.10771	germline	1	2.21267650413305e-05	1.23083903611487e-05
16	23539728	23544472	2	neutral	AA	54.5681	somatic	0	0.266451863089387	0.629412047987307
16	23897900	23935852	2	neutral	AA	47.4426	somatic	0	0.189774730008618	0.312340907972972
16	26291248	26300736	2	neutral	AA	100	somatic	0	0.442661262194955	0.392346342544166
16	34061920	34064292	24	gain	AAAAAAAAAAAAAAAABBBBBBBB	76.4806	germline	1	0.083266254639159	0.270039943592345
16	34083268	34085640	12	gain	AAAAAAABBBBB	91.4885	germline	1	0.0832668340733098	0.270040949967116
16	34085640	34095128	2	neutral	AA	8.42836	somatic	0	0.00452488913311737	0.0387196846496876
16	34095128	34099872	7	gain	AAAAABB	3.38268	germline	1	0.0143077068304509	0.0366343566787166
16	34099872	34161544	2	neutral	AA	3.00181	germline	1	0.102509600209835	0.407842102801469
16	34161544	34192380	2	neutral	AA	-1	germline	1	0.0143117302386089	0.0366406900199883
16	34192380	34211356	2	neutral	AA	3.09605	germline	1	0.0497071839608376	0.117783644253087
16	34211356	34213728	4	gain	AAAB	2.40887	germline	1	0.0832853776908234	0.270073155405309
16	34213728	34218472	2	neutral	AA	-1	germline	1	NA	NA
16	34218472	34958536	2	neutral	AA	0.658114	germline	1	1.03481100721689e-24	0
16	35980868	36089980	2	neutral	AA	2.58451	germline	1	6.74843604005349e-06	0.000178459856803537
16	36123188	36125560	6	gain	-	-1	germline	1	0.0832778439427912	0.270060071607926
16	48474192	48478936	1	loss	A	-1	germline	1	0.0201138608118271	0.0545645369489237
16	50329096	50357560	2	neutral	AA	54.5873	somatic	0	0.967614466022465	0.634218423322131
16	51847176	51861408	2	neutral	AA	100	germline	1	0.649006507269022	0.925741903144475
16	52295484	52314460	2	neutral	AA	100	somatic	0	0.939824634479026	0.718205819249988
16	52779372	52786488	2	neutral	AA	100	somatic	0	0.630701081676137	0.848846248624238
16	57029996	57044228	2	neutral	AA	54.5693	somatic	0	0.182431331158722	0.227590662508003
16	58612120	58616864	1	loss	A	-1	germline	1	0.016046808430252	0.0419154119998578
16	59058056	59179028	2	neutral	AA	5.47256	somatic	0	0.0592283695168966	0.0899145683101682
16	60528696	60538184	1	loss	A	-1	germline	1	0.00476408806802558	0.00864922900612031
16	68640936	68674144	2	neutral	AA	42.48	somatic	0	0.248084477475058	0.208049737698158
16	69067896	69077384	2	neutral	AA	54.5678	somatic	0	0.148239791321964	0.237655051709185
16	75802004	75911116	2	neutral	AA	84.5209	somatic	0	0.486887911741379	0.750210889335032
16	76504116	76511232	1	loss	A	-1	germline	1	0.0145183445901518	0.0372096034769437
16	77943920	77967640	2	neutral	AA	100	somatic	0	0.236644476508468	0.347394644418015
16	78043544	78192980	2	neutral	AA	15.5915	somatic	0	0.585071430647681	0.556061989130466
16	80901804	80942128	2	neutral	AA	36.6231	somatic	0	0.467238184380311	0.607438323228408
16	80942128	80944500	0	loss	-	-1	germline	1	0.0832703107468078	0.27004698827322
16	80949244	81120028	2	neutral	AA	29.564	germline	1	0.0188998934219678	0.0389337971651004
16	82218264	82225380	2	neutral	AA	36.3818	germline	1	0.366413123609794	0.747018582701129
16	85840308	85852168	2	neutral	AA	100	somatic	0	0.449496625539303	0.550931953662491
16	87208952	87223184	2	neutral	AA	5.44281	somatic	0	0.468798657639218	0.466337914731207
16	87939528	87946644	2	neutral	AA	54.5678	germline	1	0.0681453044447008	0.122024680673787
16	88292956	88300072	2	neutral	AA	100	somatic	0	0.875997613448381	0.995990702533069
16	89040136	89082832	2	neutral	AA	9.93628	somatic	0	0.0973350187158985	0.0990137162948308
17	3121552	3147644	2	neutral	AA	58.1004	germline	1	0.941615786503912	0.956792399095415
17	8202376	8207120	2	neutral	AA	54.5678	germline	1	0.193870253353759	0.392174906324853
17	9587624	9597112	2	neutral	AA	54.5678	somatic	0	0.076235164158223	0.0507363786471005
17	14286556	14288928	1	loss	A	-1	somatic	0	0.0832992875991733	0.27009731132375
17	15648084	15652828	2	neutral	AA	54.5678	somatic	0	0.782085523577203	0.868003991438735
17	15989652	15992024	2	neutral	AA	100	somatic	0	0.149196950610207	0.370526235676208
17	16817480	16819852	4	gain	AABB	100	germline	1	0.0832836390845854	0.270070136026385
17	21291072	21302932	4	gain	AABB	0.240562	germline	1	0.000107647425547432	9.08877674365982e-05
17	21855608	21857980	6	gain	-	-1	germline	1	0.0832726285944678	0.270051013865395
17	21857980	21922024	3	gain	-	-1	somatic	0	2.0152743286609e-18	0
17	21967092	21981324	15	gain	-	-1	germline	1	0.00269995426579816	0.00495769990377271
17	21981324	21988440	6	gain	AAAABB	-1	germline	1	NA	NA
17	21988440	22147364	6	gain	AAAABB	0.286176	somatic	0	9.22858777769659e-09	5.5871296478216e-10
17	22149736	22159224	5	gain	AAABB	0.763236	germline	1	0.00270135371263328	0.00495943290013512
17	26782252	26796484	3	gain	-	-1	germline	1	8.07724635167229e-05	0.000483769524657007
17	26808344	26815460	4	gain	-	-1	germline	1	0.014312187507226	0.0366406900199883
17	26815460	26841552	3	gain	-	-1	somatic	0	1.46298989348847e-08	8.23957535533992e-09
17	26841552	26846296	1	loss	A	-1	germline	1	0.0460968371862605	0.105607552105212
17	26865272	26867644	7	gain	-	-1	germline	1	0.0832703107468078	0.27004698827323
17	26867644	26877132	3	gain	-	-1	germline	1	0.00170129178861136	0.0101991373604745
17	26877132	26879504	4	gain	-	-1	germline	1	0.0832842186167314	0.270071142483288
17	26936432	26941176	17	gain	AAAAAAAAAAABBBBBB	3.59257	germline	1	0.0143064268643865	0.0366318786754805
17	40838724	40845840	2	neutral	AA	100	somatic	0	0.0763984490960164	0.0952172824500744
17	42546564	42556052	2	neutral	AA	54.5678	somatic	0	0.231423471600949	0.513890688225111
17	43670892	43687496	2	neutral	AA	40.9296	somatic	0	0.206258422355324	0.0950880994531865
17	47795800	47802916	2	neutral	AA	100	germline	1	0.450507556296035	0.518926400054864
17	51256548	51266036	2	neutral	AA	100	germline	1	0.709512533982103	0.404700480254376
17	53206332	53232424	2	neutral	AA	28.4544	somatic	0	0.973147238458912	0.996437005968945
17	53965372	53989092	2	neutral	AA	100	somatic	0	0.900840749967384	0.928091431467448
17	56612524	56636244	2	neutral	AA	36.379	germline	1	0.477619727881311	0.555558934728866
17	58116372	58121116	2	neutral	AA	100	somatic	0	0.516561283834123	0.423154598708878
17	59285768	59288140	1	loss	A	-1	somatic	0	0.0948250077112021	0.289568927791918
17	60493116	60519208	2	neutral	AA	54.5678	somatic	0	0.0994364617798282	0.115067082210766
17	64421148	64437752	2	neutral	AA	100	somatic	0	0.737665446369687	0.899300646349638
17	66195404	66221496	2	neutral	AA	36.5684	somatic	0	0.234693800328636	0.438468055784216
17	66904632	66935468	2	neutral	AA	100	somatic	0	0.731251164427932	0.945719700083738
17	74938596	74943340	2	neutral	AA	54.5687	somatic	0	0.713601626792932	0.63687125728992
17	76793500	76843312	2	neutral	AA	82.1399	somatic	0	0.0967365992026912	0.0877080479561125
17	79165500	79198708	2	neutral	AA	100	somatic	0	0.95283672122777	0.679386508295375
17	81055984	81060728	2	neutral	AA	54.5678	somatic	0	0.313564380189306	0.518186041407406
17	82585924	82588296	5	gain	AAABB	16.7489	germline	1	0.0832824800300934	0.270068123120791
18	5306164	5308536	0	loss	-	-1	germline	1	0.083277264446578	0.270059065181129
18	29593072	29597816	1	loss	A	-1	somatic	0	0.0289218904015739	0.0577309003706395
18	30489688	30492060	1	loss	A	-1	germline	1	0.0882924552892401	0.278662281328618
18	41287032	41289404	1	loss	A	-1	germline	1	0.0847291886745318	0.27257152922908
18	50167800	50172544	1	loss	A	-1	germline	1	0.028150973935058	0.0555345800111935
18	50957676	50990884	2	neutral	AA	36.3786	somatic	0	0.216965953114969	0.296524181546075
18	53426928	53429300	1	loss	A	-1	germline	1	0.0985164859737585	0.295591894702515
18	53744776	53749520	2	neutral	AA	100	somatic	0	0.234826668343638	0.538514413253354
18	55789440	55822648	2	neutral	AA	100	somatic	0	0.822846536518382	0.439696821531386
18	56261468	56263840	1	loss	A	-1	somatic	0	0.108818759443833	0.311926143507137
18	57279056	57281428	1	loss	A	-1	somatic	0	0.115296960425374	0.32187056360084
18	57395284	57411888	2	neutral	AA	100	somatic	0	0.230263482099169	0.0629714547541383
18	61026816	61036304	2	neutral	AA	100	somatic	0	0.621425206743817	0.494031530808321
18	64378452	64383196	2	neutral	AA	100	germline	1	0.675349575905993	0.848610504059773
18	64544492	64546864	1	loss	A	-1	somatic	0	0.0905362395686536	0.282444938199474
18	66055456	66064944	1	loss	A	-1	germline	1	0.00125702738303904	0.00164254248537576
18	66240472	66245216	1	loss	A	-1	germline	1	0.0219478758105233	0.0490616649067352
18	68100120	68140444	2	neutral	AA	36.0752	somatic	0	0.571056354373027	0.558004449378744
18	68989620	68994364	2	neutral	AA	100	somatic	0	0.676423038048756	0.832179855947122
18	74502148	74525868	2	neutral	AA	59.2333	somatic	0	0.0411315807788841	0.1189552612874
18	74616004	74618376	3	gain	-	-1	somatic	0	0.0833276928386287	0.270146634553925
18	74846088	74853204	2	neutral	AA	54.5791	somatic	0	0.0338900417571824	0.066270022051247
18	77251296	77305852	2	neutral	AA	8.46068	germline	1	0.178037425667379	0.349043021030036
18	77718580	77744672	2	neutral	AA	100	somatic	0	0.277678897697644	0.244608397518944
18	78902208	78906952	1	loss	A	-1	germline	1	0.0210252892113625	0.0513782866537804
18	79198708	79201080	4	gain	AABB	100	germline	1	0.0832946507539761	0.270089259175722
18	79518928	79523672	1	loss	A	-1	germline	1	0.0293276617188474	0.0571703840977025
19	407984	429332	2	neutral	AA	21.8271	somatic	0	0.351366471786686	0.811855362293649
19	3214060	3256756	2	neutral	AA	8.21926	somatic	0	1.42076590468222e-05	1.43937577748998e-05
19	4174720	4188952	2	neutral	AA	36.3786	somatic	0	0.750427694407549	0.475088635375487
19	6022508	6198036	2	neutral	AA	13.8234	somatic	0	0.00483753017616339	0.00824411349316156
19	7448080	7450452	3	gain	AAB	5.28973	germline	1	0.0833004468431426	0.270099324388147
19	7450452	7452824	10	gain	AAAAAABBBB	34.1923	germline	1	0.0832674135107269	0.270041956344624
19	8885512	8911604	2	neutral	AA	1.08411	germline	1	0.0982461066362614	0.213591038990499
19	9163036	9174896	1	loss	A	-1	somatic	0	0.000271972547604246	0.000266512085645876
19	10389360	10408336	2	neutral	AA	30.0247	somatic	0	0.52545275808824	0.505239945849081
19	11544524	11549268	2	neutral	AA	54.5678	somatic	0	0.429190930214219	0.707108944707416
19	12583460	12588204	0	loss	-	-1	germline	1	0.0143071582611972	0.03663463202146
19	12640388	12649876	2	neutral	AA	54.5693	somatic	0	0.0647967106410108	0.0742212531619385
19	13285572	13356732	2	neutral	AA	21.8912	somatic	0	0.0191767330409505	0.0848659510907085
19	17393876	17514848	2	neutral	AA	49.4629	somatic	0	1.12289779857224e-07	1.816289266654e-06
19	18169520	18221704	2	neutral	AA	54.5679	somatic	0	0.187496954683318	0.270042170887637
19	21151124	21566224	2	neutral	AA	2.09964	somatic	0	0.234822016467247	0.0240894285838327
19	21568596	21575712	4	gain	AABB	1.84737	germline	1	0.00270275382225004	0.0049626208265906
19	21575712	21606548	2	neutral	AA	2.21637	somatic	0	0.0902808979266653	0.262546175415749
19	23115140	23160208	2	neutral	AA	27.3375	somatic	0	0.617247274793054	0.54788670510843
19	24329604	24405508	4	gain	AABB	0.900316	germline	1	1.09311500287759e-20	0
19	27337300	27346788	4	gain	AAAB	5.4679	germline	1	0.000560793818151007	0.000763016192504629
19	27346788	27379996	6	gain	AAAABB	0.168761	germline	1	1.97619720711143e-09	7.56185114525465e-11
19	27379996	27382368	2	neutral	AA	10.7876	somatic	0	0.388530224701129	0.629059971993395
19	27382368	27398972	6	gain	AAAABB	0.227017	germline	1	4.59717337808443e-06	1.6646112366292e-06
19	29512424	29514796	0	loss	-	-1	germline	1	0.0832737875378964	0.270053026677895
19	34391628	34394000	5	gain	AAABB	2.35047	germline	1	0.0832824800300934	0.270068123120791
19	48360336	48540608	2	neutral	AA	14.6318	somatic	0	5.25383216324272e-05	1.51877000380551e-05
19	51192504	51197248	1	loss	A	-1	somatic	0	0.0230928620982306	0.0560908555649813
19	51685880	51692996	2	neutral	AA	36.3797	somatic	0	0.0158315307123741	0.0213870854758679
19	55516660	55547496	2	neutral	AA	16.46	somatic	0	0.000638265681530883	0.0013097815263059
19	56085940	56119148	2	neutral	AA	37.9617	somatic	0	0.711317727137385	0.724325950218057
19	56859212	56873444	2	neutral	AA	100	germline	1	0.689410556776869	0.502782119273365
20	6321380	6404400	2	neutral	AA	17.1772	somatic	0	0.0192609341669086	0.0513470855439979
20	14798908	14843976	1	loss	A	-1	germline	1	6.12939004791138e-11	2.9982683003027e-12
20	18418580	18430440	2	neutral	AA	100	somatic	0	0.884777888589012	0.761614704349572
20	23601400	23639352	2	neutral	AA	65.0586	somatic	0	0.625965877139971	0.423615647708644
20	25864288	25869032	2	neutral	AA	10.388	somatic	0	0.991333265346496	0.715277460823311
20	26208228	26371896	2	neutral	AA	0.87394	somatic	0	9.22511133576848e-06	0.000578932061201742
20	28781848	28788964	8	gain	-	-1	germline	1	0.00270035404013654	0.00495865018786623
20	28803196	28831660	8	gain	-	-1	somatic	0	4.32360401880987e-08	4.12819822770416e-09
20	28869612	28871984	7	gain	-	-1	germline	1	0.0832714696641049	0.270049001063837
20	28943144	28945516	4	gain	-	-1	germline	1	0.0832882754332214	0.270078187758273
20	29263364	29265736	16	gain	-	-1	germline	1	0.083266254639159	0.270039943592345
20	29265736	29270480	4	gain	-	-1	germline	1	0.0143130106232141	0.0366426177487722
20	29272852	29287084	3	gain	-	-1	germline	1	0.00602763710452595	0.0996589465540406
20	29287084	29306060	4	gain	-	-1	germline	1	4.60188261019186e-06	1.66588157568537e-06
20	29408056	29410428	5	gain	-	-1	germline	1	0.0832813209886682	0.270066110226148
20	29889572	29894316	6	gain	-	-1	germline	1	0.014310632846508	0.036638211641934
20	30975948	30978320	4	gain	-	-1	somatic	0	0.0832853776908234	0.270073155405309
20	31165708	31168080	5	gain	-	-1	germline	1	0.0832813209886682	0.270066110226148
20	31168080	31184684	3	gain	-	-1	germline	1	2.24834701713408e-05	4.48444999482378e-05
20	31184684	31189428	21	gain	-	-1	germline	1	0.0143077982604637	0.0366360087623527
20	31239240	31241612	10	gain	AAAAAABBBB	13.2727	germline	1	0.0832674135107269	0.270041956344624
20	31241612	31243984	51	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	12.8664	germline	1	0.0832650957806563	0.270037930851018
20	31243984	31246356	3	gain	AAA	13.067	germline	1	0.0834486477656697	0.270357087048932
20	32693276	32714624	2	neutral	AA	54.7239	somatic	0	0.00172607029265859	0.00262639868402237
20	32963684	33004008	2	neutral	AA	36.3915	somatic	0	0.564662178665963	0.805850796623469
20	34023968	34059548	2	neutral	AA	100	somatic	0	0.443075332967266	0.681810360513482
20	37634152	37643640	2	neutral	AA	100	somatic	0	0.300144383337791	0.617231867881946
20	39821136	39866204	2	neutral	AA	22.7097	somatic	0	0.00894990900489892	0.0154451751138306
20	40698776	40705892	2	neutral	AA	100	somatic	0	0.178364655985581	0.336687688270121
20	43642428	43647172	1	loss	A	-1	germline	1	0.0154737035942537	0.040159880637143
20	44676620	44681364	1	loss	A	-1	germline	1	0.0144816633326786	0.0371585551819817
20	44697968	44859264	2	neutral	AA	19.0816	somatic	0	0.155282947849402	0.280536178423297
20	48550096	48554840	2	neutral	AA	100	somatic	0	0.706574102602562	0.553173695930883
20	50675408	50682524	2	neutral	AA	59.7719	somatic	0	0.176871536073374	0.250926302751877
20	50703872	50763172	2	neutral	AA	100	somatic	0	0.207818629258554	0.128196985458394
20	51225712	51239944	2	neutral	AA	18.1893	somatic	0	0.330974793975818	0.406998414475545
20	51633696	51740436	2	neutral	AA	13.7293	somatic	0	0.00477911363886023	0.0116358917153557
20	52091492	52219580	2	neutral	AA	30.7727	somatic	0	0.013118529522254	0.0285674061075331
20	52810208	52909832	2	neutral	AA	88.3674	somatic	0	0.019178348345834	0.0419917759924432
20	54029416	54041276	1	loss	A	-1	germline	1	0.000257886793458335	0.000270835476058107
20	54081600	54086344	2	neutral	AA	100	somatic	0	0.480580286107092	0.804219469455452
20	56221144	56285188	2	neutral	AA	93.492	somatic	0	0.0471997800436122	0.0812374291840763
20	57525744	57580300	2	neutral	AA	54.5873	somatic	0	0.199980923491329	0.141953865174113
20	57910008	57976424	2	neutral	AA	63.9819	somatic	0	0.0515105902650525	0.0780889498481974
20	60085132	60089876	2	neutral	AA	18.1893	germline	1	0.334929101276599	0.431659516613225
20	60993608	61014956	3	gain	AAB	3.58943	germline	1	2.04495185536158e-07	3.06423248996879e-08
20	63813916	63818660	2	neutral	AA	100	somatic	0	0.373448147918808	0.815725373391424
21	8989880	8996996	8	gain	AAAAABBB	4.10845	germline	1	0.00270038735710613	0.00495870609213012
21	10270760	10273132	38	gain	-	-1	germline	1	0.0832656752082745	0.270038937220313
21	10519820	10522192	3	gain	AAB	35.6334	germline	1	0.0832981283682722	0.270095298270323
21	10650280	10652652	5	gain	AAAAB	40.0528	germline	1	0.0832824800300934	0.270068123120791
21	10652652	10662140	7	gain	AAAAABB	31.8485	germline	1	0.000532174489192924	0.000671137083989248
21	10662140	10690604	5	gain	AAAAB	9.8158	germline	1	9.23276272888117e-09	5.5871296478216e-10
21	10690604	10692976	53	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBB	100	germline	1	0.0832650957806563	0.270037930851018
21	10692976	10697720	7	gain	AAAAABB	4.70351	germline	1	0.014308621153772	0.0366373855485104
21	10697720	10702464	5	gain	AAAAB	100	germline	1	0.0143115473347705	0.0366395885005226
21	10702464	10738044	6	gain	AAAABB	0.729009	germline	1	1.97432435047864e-11	1.87516668859189e-13
21	10752276	10754648	13	gain	AAAAAAAABBBBB	4.35793	germline	1	0.083266254639159	0.270039943592345
21	16207876	16238712	2	neutral	AA	54.8373	somatic	0	0.733479637646915	0.986616169774756
21	17953668	17958412	1	loss	A	-1	somatic	0	0.0275261681284297	0.0565751976334049
21	20586588	20588960	1	loss	A	-1	germline	1	0.0832819005077475	0.270067116672091
21	20970852	20973224	2	neutral	AA	100	somatic	0	0.513395032471641	0.730011905957518
21	25546440	25655552	2	neutral	AA	100	somatic	0	0.254917635940954	0.166202987615834
21	25899868	25916472	2	neutral	AA	27.3595	somatic	0	0.229318092363199	0.148847654655674
21	26613840	26642304	2	neutral	AA	21.9722	somatic	0	0.314066690825928	0.277690797450992
21	26972012	26998104	2	neutral	AA	72.6995	somatic	0	0.886663403844675	0.983774607296099
21	28862496	28867240	2	neutral	AA	36.3786	somatic	0	0.0619913856645483	0.115711268917034
21	29481588	29500564	2	neutral	AA	100	somatic	0	0.391512948320461	0.718914913854776
21	31784800	31787172	3	gain	AAB	100	somatic	0	0.0832981283682722	0.270095298270323
21	33366924	33516360	2	neutral	AA	38.5643	somatic	0	0.595771436596003	0.907995753131058
21	34059548	34061920	2	neutral	AA	100	somatic	0	0.293687613101414	0.539112815010688
21	41804128	41806500	3	gain	AAA	8.12511	germline	1	0.0832958099456737	0.270091272196304
21	41870544	41889520	2	neutral	AA	100	somatic	0	0.596440064496645	0.68998292235222
21	43336440	43338812	3	gain	AAA	15.5005	germline	1	0.0832975487577221	0.270094291747711
21	46045264	46050008	2	neutral	AA	5.35614	somatic	0	0.366507589545198	0.353318008292294
21	46237396	46239768	1	loss	A	-1	somatic	0	0.0897473539341959	0.281123662684583
22	11212444	11214816	7	gain	-	-1	germline	1	0.0832708902038232	0.270047994667165
22	16041836	16044208	5	gain	-	-1	germline	1	0.0832813209886682	0.270066110226148
22	16558932	16561304	3	gain	AAB	9.66659	somatic	0	0.0833694453838163	0.27021912143082
22	17121096	17161420	2	neutral	AA	14.749	germline	1	0.134239133152209	0.378441274549189
22	17640564	17647680	2	neutral	AA	36.3852	somatic	0	0.157614856755956	0.311811948594157
22	17678516	17716468	2	neutral	AA	54.5681	somatic	0	0.00835907588614599	0.00992486189288411
22	17875392	17877764	3	gain	AAA	3.80405	germline	1	0.0833178370709155	0.270129521668142
22	20849880	20852252	2	neutral	AA	100	somatic	0	0.331445789245256	0.576403186794257
22	23610888	23613260	2	neutral	AA	100	somatic	0	0.315922897553085	0.561323569596163
22	24448204	24464808	2	neutral	AA	54.5678	germline	1	0.194840353570247	0.163314571928496
22	25280776	25515604	3	gain	AAB	0.484332	germline	1	6.05774954413441e-45	0
22	26604352	26606724	2	neutral	AA	100	somatic	0	0.369099566032926	0.611583964055865
22	27121448	27123820	2	neutral	AA	54.5678	somatic	0	0.212223186749012	0.450092865758569
22	27489108	27491480	2	neutral	AA	100	somatic	0	0.150154094645937	0.371827382092778
22	27557896	27567384	2	neutral	AA	100	somatic	0	0.661030839122628	0.806478347132095
22	29118672	29121044	4	gain	AAAA	7.63456	germline	1	0.0832888549915013	0.270079194237079
22	30603544	30605916	2	neutral	AA	100	somatic	0	0.103222685341696	0.303142690394806
22	31312772	31343608	2	neutral	AA	54.5678	somatic	0	0.742003052190241	0.950730992137367
22	31450348	31459836	2	neutral	AA	28.2642	somatic	0	0.949748399842145	0.953185262525368
22	33269672	33324228	2	neutral	AA	100	germline	1	0.244476892500946	0.354243311441002
22	34080896	34102244	2	neutral	AA	36.3786	somatic	0	0.912506539208426	0.545085029000055
22	34135452	34137824	2	neutral	AA	100	somatic	0	0.413477664966962	0.650654462060823
22	34467532	34469904	1	loss	A	-1	somatic	0	0.0835976434640965	0.270615029163584
22	35674880	35681996	2	neutral	AA	27.2839	germline	1	0.683440731579895	0.749331740798897
22	36607076	36682980	2	neutral	AA	54.5102	somatic	0	0.437556300549708	0.373988565913904
22	36747024	36751768	1	loss	A	-1	germline	1	0.0190459082570356	0.0508296036478899
22	37252260	37266492	2	neutral	AA	100	somatic	0	0.414475942755948	0.43829747122645
22	37411184	37470484	2	neutral	AA	54.5782	somatic	0	0.0644224562278336	0.0959441578498024
22	37562992	37579596	2	neutral	AA	27.9387	somatic	0	0.263797993743842	0.492825043285249
22	38860476	38862848	2	neutral	AA	100	somatic	0	0.86014017539122	0.921959655035832
22	42520472	42551308	4	gain	AAAB	58.4958	germline	1	0.000107664789900505	9.09253449743463e-05
22	43507224	43509596	1	loss	A	-1	somatic	0	0.0969929362004514	0.293117249996307
22	43670892	43673264	2	neutral	AA	100	germline	1	0.142635725404519	0.361516808181296
22	43810840	43817956	2	neutral	AA	54.5678	somatic	0	0.229950604333217	0.672271130607721
22	44038552	44040924	2	neutral	AA	100	somatic	0	0.667435540776573	0.830957000053637
22	45554260	45570864	2	neutral	AA	81.1448	somatic	0	0.538578968094121	0.799921507910273
22	45812808	45815180	2	neutral	AA	100	germline	1	0.636668134767292	0.812836800968494
22	46612172	46619288	2	neutral	AA	99.9985	somatic	0	0.768282800107829	0.974567115964644
22	47302424	47323772	2	neutral	AA	27.2848	somatic	0	0.783674722168071	0.978364327669986
22	49487036	49491780	2	neutral	AA	21.8301	somatic	0	0.306048843604705	0.355604585534932
22	50039712	50044456	2	neutral	AA	15.5711	somatic	0	0.887368154415734	0.989739629082529
X	26082512	26087256	0	loss	-	-1	somatic	0	0.0143610980455782	0.0367962946133978
X	78268884	78271256	3	gain	-	-1	germline	1	0.0833131993893245	0.27012146881921
X	79665992	79670736	0	loss	-	-1	germline	1	0.0143060611783499	0.0366313280280085
X	108772804	108777548	0	loss	-	-1	germline	1	0.014311638786432	0.0366472997452544
X	119738560	119743304	0	loss	-	-1	somatic	0	0.0143090783347604	0.0366401392566311
X	132803536	132808280	0	loss	-	-1	somatic	0	0.0143247216827357	0.0366844988914262
X	141788672	141793416	0	loss	-	-1	germline	1	0.0143627492808209	0.0368004409132313
X	145339556	145344300	0	loss	-	-1	somatic	0	0.0143111815332797	0.0366415161785991
X	151117748	151127236	0	loss	-	-1	somatic	0	0.0144777363994563	0.0371487988267079
Y	3845012	3852128	2	gain	AB	0.635186	germline	1	0.815891202356096	0.900495467651693
Y	10121324	10147416	2	gain	AB	3.13823	somatic	0	0.0451821434975192	0.0104262346211812
Y	10655024	10657396	7	gain	-	-1	germline	1	0.0832703107468078	0.27004698827323
Y	10659768	10688232	3	gain	-	-1	germline	1	0.00010791268041725	9.12796389519466e-05
Y	10747532	10754648	2	gain	-	-1	germline	1	0.0029784511513602	0.00572734947339426
Y	10754648	10757020	5	gain	-	-1	germline	1	0.0832824800300934	0.270068123120791
Y	10757020	10759392	2	gain	-	-1	germline	1	0.296966852300106	0.542401170716104
Y	10759392	10761764	8	gain	-	-1	germline	1	0.0832691518425763	0.270044975493574
Y	10761764	10764136	5	gain	-	-1	germline	1	0.0832824800300934	0.270068123120791
Y	10764136	10768880	2	gain	-	-1	germline	1	0.0176444887005116	0.0417166975289543
Y	10768880	10771252	4	gain	-	-1	germline	1	0.0832853776908234	0.270073155405309
Y	10771252	10775996	2	gain	-	-1	germline	1	0.0303684218628466	0.0873174355290558
Y	10775996	10778368	5	gain	-	-1	germline	1	0.0832813209886682	0.270066110226148
Y	10778368	10794972	2	gain	-	-1	germline	1	0.000113629661550578	0.00169853439224599
Y	10794972	10797344	6	gain	-	-1	germline	1	0.0832714696641049	0.270049001063837
Y	10797344	10802088	4	gain	-	-1	germline	1	0.01431291916382	0.0366428931458422
Y	10802088	10806832	2	gain	-	-1	germline	1	0.143323753844084	0.297244798430854
Y	10806832	10809204	4	gain	-	-1	germline	1	0.0832888549915013	0.270079194237079
Y	10821064	10825808	3	gain	-	-1	germline	1	0.0143282000302666	0.0366850502381326
Y	10825808	10844784	2	gain	-	-1	germline	1	0.00522984001484964	0.00469048923217996
Y	10844784	10847156	4	gain	-	-1	germline	1	0.083289434553048	0.270080200718623
Y	10847156	10887480	2	gain	-	-1	germline	1	0.193466768325989	0.191980198480233
Y	10887480	10894596	3	gain	-	-1	germline	1	0.0143167609022732	0.0366500541053323
Y	10925432	10927804	4	gain	-	-1	germline	1	0.0832842186167314	0.270071142483288
Y	10927804	10934920	2	gain	-	-1	germline	1	0.0940861819905198	0.298373665097253
Y	10934920	10939664	3	gain	-	-1	germline	1	0.0143164864622214	0.0366481260342626
Y	10939664	10984732	2	gain	-	-1	germline	1	0.355548443596431	0.11421195443263
Y	10984732	10987104	4	gain	-	-1	germline	1	0.0832934915753462	0.27008724616609
Y	10987104	10989476	13	gain	-	-1	germline	1	0.083266254639159	0.270039943592345
Y	10989476	10998964	2	gain	-	-1	germline	1	0.802155204900989	0.270924089219901
Y	10998964	11001336	9	gain	-	-1	germline	1	0.0832685723953602	0.270043969107853
Y	11003708	11010824	2	gain	-	-1	germline	1	0.447568285612396	0.232665460607188
Y	11013196	11015568	16	gain	-	-1	germline	1	0.083266254639159	0.270039943592345
Y	11015568	11041660	2	gain	AA	6.24303	germline	1	0.0472037801244477	0.0400372628439368
Y	11290720	11307324	30	gain	AAAAAAAAAAAAAAAAAAAABBBBBBBBBB	5.07976	germline	1	4.59357690589909e-06	1.66329807571586e-06
Y	11307324	11333416	9	gain	AAAAAABBB	0.389947	germline	1	2.20961229898694e-05	1.22917501580444e-05
Y	11530292	11532664	22	gain	AAAAAAAAAAAAAAAAAAAAAB	4.71866	germline	1	0.083266254639159	0.270039943592345
Y	11686844	11689216	3	gain	AAA	12.0017	germline	1	0.0833039246534597	0.27010536364702
Y	11689216	11691588	7	gain	AAAABBB	76.6294	germline	1	0.0832708902038232	0.270047994667165
Y	11715308	11720052	3	gain	AAA	5.91404	germline	1	0.0202902070162468	0.055115979968258
Y	11720052	11724796	22	gain	AAAAAAAAAAAAAAABBBBBBB	37.0153	germline	1	0.0143064268643865	0.0366318786754805
Y	11729540	11731912	3	gain	AAB	21.4261	germline	1	0.0833033450102391	0.27010435709703
Y	11734284	11736656	3	gain	AAB	61.1371	germline	1	0.0833108806269448	0.270117442460453
Y	11736656	11743772	2	gain	AA	6.32726	germline	1	0.139515514299862	0.289328044708525
Y	11743772	11746144	3	gain	AAB	5.59184	germline	1	0.0833027653702857	0.270103350549777
Y	11746144	11748516	11	gain	AAAAAAABBBB	3.2871	germline	1	0.0832668340733098	0.270040949967116
Y	26637560	26639932	5	gain	AAABB	7.14832	germline	1	0.0832807414728555	0.270065103782933
Y	26639932	26656536	2	gain	AA	15.6131	germline	1	0.867117447854355	0.917103591948742
Y	56826004	56830748	16	gain	AAAAAAAAAAABBBBB	100	germline	1	0.0143064268643865	0.0366318786754805
Y	56830748	56835492	37	gain	AAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBB	15.7458	germline	1	0.0143063354421043	0.0366318786754805
Y	56835492	56852096	12	gain	AAAAAAAABBBB	2.39274	germline	1	0.000532065041763367	0.000670995858204959
